RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ZFHX3Q15911 3703 aa7.1□□□□□ -1.27
CLN3-244ENST00000636147 KRTAP1-1Q07627 177 aa7.1□□□□□ -1.27
CLN3-244ENST00000636147 PHF5AQ7RTV0 110 aaKnown RBP7.1□□□□□ -1.27
CLN3-244ENST00000636147 LINC00588Q9Y4M8 146 aa7.1□□□□□ -1.27
CLN3-244ENST00000636147 H3BNG1 76 aa7.09□□□□□ -1.27
CLN3-244ENST00000636147 VWFP04275 2813 aa7.08□□□□□ -1.28
CLN3-244ENST00000636147 COA5Q86WW8 74 aa7.07□□□□□ -1.28
CLN3-244ENST00000636147 VPS13CQ709C8 3753 aa7.07□□□□□ -1.28
CLN3-244ENST00000636147 Q1T7F1 81 aa7.07□□□□□ -1.28
CLN3-244ENST00000636147 PRR15Q8IV56 129 aa7.06□□□□□ -1.28
CLN3-244ENST00000636147 C14orf177Q52M58 125 aa7.05□□□□□ -1.28
CLN3-244ENST00000636147 RETNLBQ9BQ08 111 aa7.05□□□□□ -1.28
CLN3-244ENST00000636147 PDZD2O15018 2839 aa7.05□□□□□ -1.28
CLN3-244ENST00000636147 DNAH10OSP0CZ25 163 aa7.05□□□□□ -1.28
CLN3-244ENST00000636147 SPRR4Q96PI1 79 aa7.04□□□□□ -1.28
CLN3-244ENST00000636147 A8MWP4 228 aa7.03□□□□□ -1.28
CLN3-244ENST00000636147 KRTAP10-11P60412 298 aa7.01□□□□□ -1.29
CLN3-244ENST00000636147 H3BPC8 53 aa7.01□□□□□ -1.29
CLN3-244ENST00000636147 C4orf48Q5BLP8 95 aa7.01□□□□□ -1.29
CLN3-244ENST00000636147 KRTAP26-1Q6PEX3 210 aa7.01□□□□□ -1.29
CLN3-244ENST00000636147 TENM4Q6N022 2769 aa7.01□□□□□ -1.29
CLN3-244ENST00000636147 CYP4F30PQ9H0H9 118 aa7□□□□□ -1.29
CLN3-244ENST00000636147 TLX1NBP0CAT3 122 aa7□□□□□ -1.29
CLN3-244ENST00000636147 C16orf90A8MZG2 172 aa6.99□□□□□ -1.29
CLN3-244ENST00000636147 TENM1Q9UKZ4 2725 aa6.98□□□□□ -1.29
CLN3-244ENST00000636147 A8MU10 97 aa6.98□□□□□ -1.29
CLN3-244ENST00000636147 CIRBP-AS1Q8TBR5 109 aa6.98□□□□□ -1.29
CLN3-244ENST00000636147 LOC101927531A0A1B0GV80 90 aa6.98□□□□□ -1.29
CLN3-244ENST00000636147 CD164Q04900 197 aa6.98□□□□□ -1.29
CLN3-244ENST00000636147 Q8N9P0 234 aaPredicted RBP6.98□□□□□ -1.29
CLN3-244ENST00000636147 PLA2G2DQ9UNK4 145 aa6.98□□□□□ -1.29
CLN3-244ENST00000636147 MOBPQ13875 183 aa6.97□□□□□ -1.29
CLN3-244ENST00000636147 PKD1L1Q8TDX9 2849 aa6.97□□□□□ -1.29
CLN3-244ENST00000636147 Q5VV11 94 aa6.97□□□□□ -1.29
CLN3-244ENST00000636147 STAB2Q8WWQ8 2551 aa6.97□□□□□ -1.29
CLN3-244ENST00000636147 TENM3Q9P273 2699 aa6.97□□□□□ -1.29
CLN3-244ENST00000636147 TNP2Q05952 138 aa6.95□□□□□ -1.3
CLN3-244ENST00000636147 SPRR1AP35321 89 aa6.95□□□□□ -1.3
CLN3-244ENST00000636147 ATP11AUNQ6ZP68 121 aa6.95□□□□□ -1.3
CLN3-244ENST00000636147 KTN1-AS1Q86SY8 53 aa6.95□□□□□ -1.3
CLN3-244ENST00000636147 TP53AIP1Q9HCN2 124 aa6.95□□□□□ -1.3
CLN3-244ENST00000636147 CNBPP62633 177 aaKnown RBP6.94□□□□□ -1.3
CLN3-244ENST00000636147 SPANXA2-OT1Q8N9U9 137 aa6.93□□□□□ -1.3
CLN3-244ENST00000636147 ANAPC11Q9NYG5 84 aa6.93□□□□□ -1.3
CLN3-244ENST00000636147 ZCCHC13Q8WW36 166 aaKnown RBP6.93□□□□□ -1.3
CLN3-244ENST00000636147 IGLV5-37A0A075B6J1 123 aa6.92□□□□□ -1.3
CLN3-244ENST00000636147 PRR26Q8N8Z3 221 aa6.92□□□□□ -1.3
CLN3-244ENST00000636147 C8orf17Q9NRJ1 99 aa6.91□□□□□ -1.3
CLN3-244ENST00000636147 ZNF706Q9Y5V0 76 aaPredicted RBP6.91□□□□□ -1.3
CLN3-244ENST00000636147 KRTAP4-16G5E9R7 235 aaPredicted RBP6.9□□□□□ -1.3
CLN3-244ENST00000636147 SPINK1P00995 79 aa6.9□□□□□ -1.3
CLN3-244ENST00000636147 RBM12B-AS1Q9P1G2 102 aa6.89□□□□□ -1.31
CLN3-244ENST00000636147 FBN1P35555 2871 aaKnown RBP6.88□□□□□ -1.31
CLN3-244ENST00000636147 IGLV8-61A0A075B6I0 122 aa6.88□□□□□ -1.31
CLN3-244ENST00000636147 KRTAP24-1Q3LI83 254 aa6.88□□□□□ -1.31
CLN3-244ENST00000636147 MRPL34Q9BQ48 92 aaKnown RBP6.88□□□□□ -1.31
CLN3-244ENST00000636147 A0A1B0GU69 56 aa6.87□□□□□ -1.31
CLN3-244ENST00000636147 CDC42SE1Q9NRR8 79 aa6.86□□□□□ -1.31
CLN3-244ENST00000636147 IGKV2D-30A0A075B6S6 120 aa6.85□□□□□ -1.31
CLN3-244ENST00000636147 IGKV2-30P06310 120 aa6.85□□□□□ -1.31
CLN3-244ENST00000636147 ACYP2P14621 99 aa6.85□□□□□ -1.31
CLN3-244ENST00000636147 IGLV7-46A0A075B6I9 117 aa6.85□□□□□ -1.31
CLN3-244ENST00000636147 KRTAP7-1Q8IUC3 87 aa6.85□□□□□ -1.31
CLN3-244ENST00000636147 MMP24-AS1A0A0U1RRL7 71 aa6.84□□□□□ -1.31
CLN3-244ENST00000636147 H3BS24 57 aa6.84□□□□□ -1.31
CLN3-244ENST00000636147 C7orf65Q6ZTY9 151 aa6.84□□□□□ -1.31
CLN3-244ENST00000636147 A0A1B0GVX0 72 aa6.84□□□□□ -1.31
CLN3-244ENST00000636147 LINC00472Q9H8W2 130 aa6.84□□□□□ -1.31
CLN3-244ENST00000636147 LCE6AA0A183 80 aa6.83□□□□□ -1.32
CLN3-244ENST00000636147 Q75L30 129 aa6.83□□□□□ -1.32
CLN3-244ENST00000636147 LCA10Q71F78 164 aa6.83□□□□□ -1.32
CLN3-244ENST00000636147 SPINK7P58062 85 aa6.82□□□□□ -1.32
CLN3-244ENST00000636147 KRTAP29-1A8MX34 341 aaPredicted RBP6.82□□□□□ -1.32
CLN3-244ENST00000636147 MDFIQ99750 246 aa6.81□□□□□ -1.32
CLN3-244ENST00000636147 NBPF19A0A087WUL8 3843 aa6.8□□□□□ -1.32
CLN3-244ENST00000636147 C9orf163Q8N9P6 203 aa6.8□□□□□ -1.32
CLN3-244ENST00000636147 PRAC1Q96KF2 57 aa6.8□□□□□ -1.32
CLN3-244ENST00000636147 HRES1P13985 223 aa6.78□□□□□ -1.32
CLN3-244ENST00000636147 KRTAP1-5Q9BYS1 174 aa6.78□□□□□ -1.32
CLN3-244ENST00000636147 SRRM2Q9UQ35 2752 aaKnown RBP6.78□□□□□ -1.32
CLN3-244ENST00000636147 OTOGQ6ZRI0 2925 aa6.78□□□□□ -1.32
CLN3-244ENST00000636147 K7EIL1 84 aa6.77□□□□□ -1.33
CLN3-244ENST00000636147 NBDYA0A0U1RRE5 68 aa6.77□□□□□ -1.33
CLN3-244ENST00000636147 IGLV5-52A0A0A0MRZ9 124 aa6.76□□□□□ -1.33
CLN3-244ENST00000636147 LINC01558Q9Y6Z2 57 aa6.76□□□□□ -1.33
CLN3-244ENST00000636147 KRTAP11-1Q8IUC1 163 aa6.76□□□□□ -1.33
CLN3-244ENST00000636147 C8orf87E5RJ46 101 aa6.75□□□□□ -1.33
CLN3-244ENST00000636147 LINC00313P59037 77 aa6.74□□□□□ -1.33
CLN3-244ENST00000636147 SPACA4Q8TDM5 124 aa6.74□□□□□ -1.33
CLN3-244ENST00000636147 DMBT1Q9UGM3 2413 aaPredicted RBP6.73□□□□□ -1.33
CLN3-244ENST00000636147 PSORS1C2Q9UIG4 136 aa6.73□□□□□ -1.33
CLN3-244ENST00000636147 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.72□□□□□ -1.33
CLN3-244ENST00000636147 TENM2Q9NT68 2774 aa6.72□□□□□ -1.33
CLN3-244ENST00000636147 RTL8CO15255 209 aa6.71□□□□□ -1.33
CLN3-244ENST00000636147 LY6G6CO95867 125 aa6.71□□□□□ -1.34
CLN3-244ENST00000636147 UQCR11O14957 56 aa6.7□□□□□ -1.34
CLN3-244ENST00000636147 MIR22HGQ0VDD5 57 aa6.7□□□□□ -1.34
CLN3-244ENST00000636147 PANO1I0J062 215 aa6.7□□□□□ -1.34
CLN3-244ENST00000636147 SPRR1BP22528 89 aa6.7□□□□□ -1.34
CLN3-244ENST00000636147 NUPR2A6NF83 97 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms