RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 BCE1O60756 84 aa8.91□□□□□ -0.98
VRK3-217ENST00000599538 Q8N9L7 120 aa8.91□□□□□ -0.98
VRK3-217ENST00000599538 WWC2-AS2Q96NR7 200 aa8.91□□□□□ -0.98
VRK3-217ENST00000599538 IGFL1Q6UW32 110 aa8.9□□□□□ -0.98
VRK3-217ENST00000599538 IGLV5-52A0A0A0MRZ9 124 aa8.9□□□□□ -0.99
VRK3-217ENST00000599538 HYDINQ4G0P3 5121 aa8.89□□□□□ -0.99
VRK3-217ENST00000599538 SPRR4Q96PI1 79 aa8.89□□□□□ -0.99
VRK3-217ENST00000599538 DNAH8Q96JB1 4490 aa8.89□□□□□ -0.99
VRK3-217ENST00000599538 F8WEM9 126 aa8.89□□□□□ -0.99
VRK3-217ENST00000599538 DNAH6Q9C0G6 4158 aa8.88□□□□□ -0.99
VRK3-217ENST00000599538 COX7CP15954 63 aa8.87□□□□□ -0.99
VRK3-217ENST00000599538 SS18L2Q9UHA2 77 aa8.87□□□□□ -0.99
VRK3-217ENST00000599538 FRAS1Q86XX4 4008 aa8.87□□□□□ -0.99
VRK3-217ENST00000599538 IGLV8-61A0A075B6I0 122 aa8.86□□□□□ -0.99
VRK3-217ENST00000599538 UQCRQO14949 82 aa8.86□□□□□ -0.99
VRK3-217ENST00000599538 SPRR1BP22528 89 aa8.86□□□□□ -0.99
VRK3-217ENST00000599538 KRTAP10-2P60368 255 aa8.86□□□□□ -0.99
VRK3-217ENST00000599538 PLAC8Q9NZF1 115 aa8.86□□□□□ -0.99
VRK3-217ENST00000599538 BPY2O14599 106 aa8.85□□□□□ -0.99
VRK3-217ENST00000599538 CRYGAP11844 174 aa8.85□□□□□ -0.99
VRK3-217ENST00000599538 PSORS1C2Q9UIG4 136 aa8.85□□□□□ -0.99
VRK3-217ENST00000599538 DNAH11Q96DT5 4516 aa8.84□□□□□ -0.99
VRK3-217ENST00000599538 IGKV4-1P06312 121 aa8.84□□□□□ -0.99
VRK3-217ENST00000599538 SERP2Q8N6R1 65 aa8.84□□□□□ -0.99
VRK3-217ENST00000599538 DNAH5Q8TE73 4624 aa8.83□□□□□ -1
VRK3-217ENST00000599538 A0A1B0GW54 56 aa8.83□□□□□ -1
VRK3-217ENST00000599538 C9orf153Q5TBE3 101 aa8.83□□□□□ -1
VRK3-217ENST00000599538 ALMS1Q8TCU4 4167 aa8.82□□□□□ -1
VRK3-217ENST00000599538 CYSTM1Q9H1C7 97 aa8.82□□□□□ -1
VRK3-217ENST00000599538 FAM30AQ9NZY2 134 aa8.81□□□□□ -1
VRK3-217ENST00000599538 A0A087WSZ3 146 aa8.8□□□□□ -1
VRK3-217ENST00000599538 DEFB116Q30KQ4 102 aa8.78□□□□□ -1
VRK3-217ENST00000599538 FAT2Q9NYQ8 4349 aa8.78□□□□□ -1
VRK3-217ENST00000599538 DSCR10P59022 87 aa8.78□□□□□ -1
VRK3-217ENST00000599538 PKD1P98161 4303 aa8.77□□□□□ -1
VRK3-217ENST00000599538 ANAPC11Q9NYG5 84 aa8.77□□□□□ -1.01
VRK3-217ENST00000599538 IGLV9-49A0A0B4J1Y8 123 aa8.75□□□□□ -1.01
VRK3-217ENST00000599538 CIRBP-AS1Q8TBR5 109 aa8.75□□□□□ -1.01
VRK3-217ENST00000599538 K7EQZ3 153 aa8.74□□□□□ -1.01
VRK3-217ENST00000599538 ZNF861PO60384 105 aa8.74□□□□□ -1.01
VRK3-217ENST00000599538 KRTAP10-1P60331 282 aa8.72□□□□□ -1.01
VRK3-217ENST00000599538 LINC00483Q53H64 154 aa8.72□□□□□ -1.01
VRK3-217ENST00000599538 TRAV7A0A075B6U4 112 aa8.72□□□□□ -1.01
VRK3-217ENST00000599538 C20orf197Q8N268 126 aa8.7□□□□□ -1.02
VRK3-217ENST00000599538 RPL37AP61513 92 aaKnown RBP8.69□□□□□ -1.02
VRK3-217ENST00000599538 IGLV7-43P04211 117 aa8.69□□□□□ -1.02
VRK3-217ENST00000599538 LRP1BQ9NZR2 4599 aa8.68□□□□□ -1.02
VRK3-217ENST00000599538 SACSQ9NZJ4 4579 aa8.68□□□□□ -1.02
VRK3-217ENST00000599538 Q6ZSA8 131 aa8.68□□□□□ -1.02
VRK3-217ENST00000599538 HRCT1Q6UXD1 115 aa8.67□□□□□ -1.02
VRK3-217ENST00000599538 MOBPQ13875 183 aa8.66□□□□□ -1.02
VRK3-217ENST00000599538 ZNF706Q9Y5V0 76 aaPredicted RBP8.66□□□□□ -1.02
VRK3-217ENST00000599538 SMIM20Q8N5G0 67 aa8.65□□□□□ -1.02
VRK3-217ENST00000599538 OCR1Q9BZK8 76 aa8.65□□□□□ -1.02
VRK3-217ENST00000599538 LINC00472Q9H8W2 130 aa8.65□□□□□ -1.02
VRK3-217ENST00000599538 SNURFQ9Y675 71 aa8.64□□□□□ -1.03
VRK3-217ENST00000599538 PKHD1P08F94 4074 aa8.62□□□□□ -1.03
VRK3-217ENST00000599538 HCG22E2RYF7 251 aa8.6□□□□□ -1.03
VRK3-217ENST00000599538 WFDC13Q8IUB5 93 aa8.59□□□□□ -1.03
VRK3-217ENST00000599538 Q96NJ1 140 aa8.59□□□□□ -1.03
VRK3-217ENST00000599538 KLKP1Q107X0 134 aa8.59□□□□□ -1.03
VRK3-217ENST00000599538 PRR15Q8IV56 129 aa8.57□□□□□ -1.04
VRK3-217ENST00000599538 A8MWP4 228 aa8.56□□□□□ -1.04
VRK3-217ENST00000599538 H7BZZ5 65 aa8.56□□□□□ -1.04
VRK3-217ENST00000599538 TMEM254Q8TBM7 123 aa8.56□□□□□ -1.04
VRK3-217ENST00000599538 VPS13BQ7Z7G8 4022 aa8.56□□□□□ -1.04
VRK3-217ENST00000599538 TMEM258P61165 79 aa8.54□□□□□ -1.04
VRK3-217ENST00000599538 KRTAP29-1A8MX34 341 aaPredicted RBP8.54□□□□□ -1.04
VRK3-217ENST00000599538 A0A087X002 238 aa8.53□□□□□ -1.04
VRK3-217ENST00000599538 LCE6AA0A183 80 aa8.53□□□□□ -1.04
VRK3-217ENST00000599538 A0A0U1RQV1 116 aa8.51□□□□□ -1.05
VRK3-217ENST00000599538 SVIPQ8NHG7 77 aa8.5□□□□□ -1.05
VRK3-217ENST00000599538 KRTAP13-2Q52LG2 175 aa8.5□□□□□ -1.05
VRK3-217ENST00000599538 CASC2Q6XLA1 102 aa8.5□□□□□ -1.05
VRK3-217ENST00000599538 MMP24-AS1A0A0U1RRL7 71 aa8.48□□□□□ -1.05
VRK3-217ENST00000599538 J3KT08 172 aa8.48□□□□□ -1.05
VRK3-217ENST00000599538 RPS28P62857 69 aaKnown RBP8.48□□□□□ -1.05
VRK3-217ENST00000599538 DYNC1H1Q14204 4646 aaKnown RBP8.47□□□□□ -1.05
VRK3-217ENST00000599538 KMT2CQ8NEZ4 4911 aaKnown RBP8.47□□□□□ -1.05
VRK3-217ENST00000599538 KRTAP1-4P0C5Y4 121 aa8.46□□□□□ -1.06
VRK3-217ENST00000599538 NDUFB1O75438 58 aa8.45□□□□□ -1.06
VRK3-217ENST00000599538 SSBP3-AS1Q7Z2R9 100 aa8.45□□□□□ -1.06
VRK3-217ENST00000599538 RYR2Q92736 4967 aa8.45□□□□□ -1.06
VRK3-217ENST00000599538 A0A1B0GVY2 172 aa8.44□□□□□ -1.06
VRK3-217ENST00000599538 FAM236DA0A1B0GTK5 79 aa8.44□□□□□ -1.06
VRK3-217ENST00000599538 OXTP01178 125 aa8.44□□□□□ -1.06
VRK3-217ENST00000599538 FAM236CP0DP71 79 aa8.44□□□□□ -1.06
VRK3-217ENST00000599538 NOTCH2NLQ7Z3S9 236 aa8.44□□□□□ -1.06
VRK3-217ENST00000599538 SPINK6Q6UWN8 80 aa8.43□□□□□ -1.06
VRK3-217ENST00000599538 LINC00336Q6ZUF6 198 aa8.43□□□□□ -1.06
VRK3-217ENST00000599538 IGHV6-1A0A0B4J1U7 121 aa8.42□□□□□ -1.06
VRK3-217ENST00000599538 hDV103S1A0JD37 113 aa8.42□□□□□ -1.06
VRK3-217ENST00000599538 A0A1B0GVX0 72 aa8.41□□□□□ -1.06
VRK3-217ENST00000599538 SMR3BP02814 79 aaPredicted RBP8.41□□□□□ -1.06
VRK3-217ENST00000599538 ZCCHC13Q8WW36 166 aaKnown RBP8.41□□□□□ -1.06
VRK3-217ENST00000599538 C8orf17Q9NRJ1 99 aa8.41□□□□□ -1.06
VRK3-217ENST00000599538 NDUFC1O43677 76 aa8.41□□□□□ -1.06
VRK3-217ENST00000599538 C5orf47Q569G3 176 aa8.41□□□□□ -1.06
VRK3-217ENST00000599538 CD164Q04900 197 aa8.4□□□□□ -1.06
VRK3-217ENST00000599538 ASB16-AS1Q495Z4 193 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms