RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TMEM238LA0A1B0GVL6 79 aa9□□□□□ -0.97
TRIM28-213ENST00000598355 A6NJY4 79 aa9□□□□□ -0.97
TRIM28-213ENST00000598355 IGLV8-61A0A075B6I0 122 aa8.99□□□□□ -0.97
TRIM28-213ENST00000598355 PPDPFLQ8WWR9 84 aa8.99□□□□□ -0.97
TRIM28-213ENST00000598355 MUC2Q02817 5179 aa8.98□□□□□ -0.97
TRIM28-213ENST00000598355 MUC17Q685J3 4493 aa8.98□□□□□ -0.97
TRIM28-213ENST00000598355 H7C2G1 150 aa8.97□□□□□ -0.97
TRIM28-213ENST00000598355 HSD52Q0P140 79 aa8.97□□□□□ -0.97
TRIM28-213ENST00000598355 HRCT1Q6UXD1 115 aa8.97□□□□□ -0.97
TRIM28-213ENST00000598355 PRO1854Q9UHT4 67 aa8.97□□□□□ -0.97
TRIM28-213ENST00000598355 A0A0G2JQZ4 141 aa8.95□□□□□ -0.98
TRIM28-213ENST00000598355 H0YGX0 51 aa8.95□□□□□ -0.98
TRIM28-213ENST00000598355 FAM218AQ96MZ4 157 aa8.95□□□□□ -0.98
TRIM28-213ENST00000598355 F8WEM9 126 aa8.94□□□□□ -0.98
TRIM28-213ENST00000598355 UQCR10Q9UDW1 63 aa8.94□□□□□ -0.98
TRIM28-213ENST00000598355 A0A1B0GX51 115 aa8.92□□□□□ -0.98
TRIM28-213ENST00000598355 Q6JHZ5 121 aa8.92□□□□□ -0.98
TRIM28-213ENST00000598355 OCIAD2Q56VL3 154 aa8.91□□□□□ -0.98
TRIM28-213ENST00000598355 CLEC2BQ92478 149 aa8.91□□□□□ -0.98
TRIM28-213ENST00000598355 TRIAP1O43715 76 aa8.9□□□□□ -0.98
TRIM28-213ENST00000598355 ASB16-AS1Q495Z4 193 aa8.9□□□□□ -0.98
TRIM28-213ENST00000598355 XP32Q5T750 250 aa8.9□□□□□ -0.98
TRIM28-213ENST00000598355 IGFL1Q6UW32 110 aa8.9□□□□□ -0.98
TRIM28-213ENST00000598355 C1orf195Q5TG92 126 aa8.89□□□□□ -0.99
TRIM28-213ENST00000598355 K7ERJ3 54 aa8.87□□□□□ -0.99
TRIM28-213ENST00000598355 SNCGO76070 127 aa8.86□□□□□ -0.99
TRIM28-213ENST00000598355 TRBV7-7A0A0K0K1E9 115 aa8.85□□□□□ -0.99
TRIM28-213ENST00000598355 SNHG12Q9BXW3 62 aa8.85□□□□□ -0.99
TRIM28-213ENST00000598355 TCL1BO95988 128 aa8.83□□□□□ -1
TRIM28-213ENST00000598355 H3BUT2 72 aa8.82□□□□□ -1
TRIM28-213ENST00000598355 SMIM6P0DI80 62 aa8.82□□□□□ -1
TRIM28-213ENST00000598355 NDUFV3P56181 108 aaKnown RBP8.82□□□□□ -1
TRIM28-213ENST00000598355 SEC61BP60468 96 aaKnown RBP8.82□□□□□ -1
TRIM28-213ENST00000598355 Q6Q795 121 aa8.82□□□□□ -1
TRIM28-213ENST00000598355 A0A0U1RQV1 116 aa8.81□□□□□ -1
TRIM28-213ENST00000598355 GHRHP01286 108 aa8.8□□□□□ -1
TRIM28-213ENST00000598355 KRTAP4-1Q9BYQ7 146 aa8.79□□□□□ -1
TRIM28-213ENST00000598355 COX6CP09669 75 aa8.77□□□□□ -1.01
TRIM28-213ENST00000598355 PSMB2P49721 201 aa8.77□□□□□ -1.01
TRIM28-213ENST00000598355 C9orf92A6NGG3 77 aa8.76□□□□□ -1.01
TRIM28-213ENST00000598355 H3BQ85 93 aa8.75□□□□□ -1.01
TRIM28-213ENST00000598355 DNAL4O96015 105 aa8.75□□□□□ -1.01
TRIM28-213ENST00000598355 TEN1Q86WV5 123 aa8.75□□□□□ -1.01
TRIM28-213ENST00000598355 ORMDL1Q9P0S3 153 aa8.75□□□□□ -1.01
TRIM28-213ENST00000598355 H3BMG7 143 aa8.74□□□□□ -1.01
TRIM28-213ENST00000598355 LCE2AQ5TA79 106 aaPredicted RBP8.74□□□□□ -1.01
TRIM28-213ENST00000598355 FAT4Q6V0I7 4981 aa8.74□□□□□ -1.01
TRIM28-213ENST00000598355 FABP2P12104 132 aa8.73□□□□□ -1.01
TRIM28-213ENST00000598355 LST1O00453 97 aa8.72□□□□□ -1.01
TRIM28-213ENST00000598355 TRACP01848 142 aa8.72□□□□□ -1.01
TRIM28-213ENST00000598355 M0R143 59 aa8.71□□□□□ -1.02
TRIM28-213ENST00000598355 SS18L2Q9UHA2 77 aa8.71□□□□□ -1.02
TRIM28-213ENST00000598355 TMEM256-PLSCR3K7ERE1 68 aa8.7□□□□□ -1.02
TRIM28-213ENST00000598355 A0A1W2PNM2 257 aa8.69□□□□□ -1.02
TRIM28-213ENST00000598355 LOC105371267A0A1B0GV96 52 aa8.68□□□□□ -1.02
TRIM28-213ENST00000598355 UBE2V1Q13404 147 aa8.68□□□□□ -1.02
TRIM28-213ENST00000598355 A0A087WSZ3 146 aa8.67□□□□□ -1.02
TRIM28-213ENST00000598355 RPL37P61927 97 aaKnown RBP8.67□□□□□ -1.02
TRIM28-213ENST00000598355 Q96NJ1 140 aa8.67□□□□□ -1.02
TRIM28-213ENST00000598355 PCOTHQ58A44 107 aa8.66□□□□□ -1.02
TRIM28-213ENST00000598355 TRBV7-4A0A0J9YYF1 115 aa8.65□□□□□ -1.02
TRIM28-213ENST00000598355 TSTD3H0UI37 97 aa8.64□□□□□ -1.03
TRIM28-213ENST00000598355 SCGB1C2P0DMR2 95 aa8.64□□□□□ -1.03
TRIM28-213ENST00000598355 ANKRD29Q8N6D5 301 aa8.63□□□□□ -1.03
TRIM28-213ENST00000598355 KRTAP19-2Q3LHN2 52 aa8.6□□□□□ -1.03
TRIM28-213ENST00000598355 A0A1B0GV72 72 aa8.59□□□□□ -1.03
TRIM28-213ENST00000598355 Q75L30 129 aa8.58□□□□□ -1.04
TRIM28-213ENST00000598355 OBSCN-AS1Q96MR7 158 aa8.58□□□□□ -1.04
TRIM28-213ENST00000598355 NAA38Q9BRA0 125 aaKnown RBP8.58□□□□□ -1.04
TRIM28-213ENST00000598355 CCKP06307 115 aa8.57□□□□□ -1.04
TRIM28-213ENST00000598355 BAALC-AS2P0C853 105 aa8.56□□□□□ -1.04
TRIM28-213ENST00000598355 ATXN8Q156A1 80 aa8.56□□□□□ -1.04
TRIM28-213ENST00000598355 LCE2CQ5TA81 110 aa8.56□□□□□ -1.04
TRIM28-213ENST00000598355 RBM3P98179 157 aaKnown RBP8.55□□□□□ -1.04
TRIM28-213ENST00000598355 C20orf166-AS1Q96NR2 134 aa8.53□□□□□ -1.04
TRIM28-213ENST00000598355 LINC00472Q9H8W2 130 aa8.53□□□□□ -1.04
TRIM28-213ENST00000598355 LYRM7Q5U5X0 104 aa8.52□□□□□ -1.05
TRIM28-213ENST00000598355 DSCR8Q96T75 97 aa8.52□□□□□ -1.05
TRIM28-213ENST00000598355 TRBV20-1A0A075B6N2 111 aa8.5□□□□□ -1.05
TRIM28-213ENST00000598355 A8MUU9 505 aa8.5□□□□□ -1.05
TRIM28-213ENST00000598355 SIGMAR1Q99720 223 aa8.5□□□□□ -1.05
TRIM28-213ENST00000598355 BATFQ16520 125 aa8.49□□□□□ -1.05
TRIM28-213ENST00000598355 C9JAW5 83 aa8.48□□□□□ -1.05
TRIM28-213ENST00000598355 JMJD7-PLA2G4BH0Y9G9 81 aa8.48□□□□□ -1.05
TRIM28-213ENST00000598355 IGKV4-1P06312 121 aa8.48□□□□□ -1.05
TRIM28-213ENST00000598355 TAX1BP3O14907 124 aa8.47□□□□□ -1.05
TRIM28-213ENST00000598355 C21orf62-AS1Q17RA5 79 aa8.47□□□□□ -1.05
TRIM28-213ENST00000598355 Q6ZQT0 140 aa8.47□□□□□ -1.05
TRIM28-213ENST00000598355 LOC110117498A0A087WWA1 95 aa8.46□□□□□ -1.06
TRIM28-213ENST00000598355 C9orf118A6NHY6 69 aa8.46□□□□□ -1.06
TRIM28-213ENST00000598355 KRTAP16-1A8MUX0 517 aa8.46□□□□□ -1.06
TRIM28-213ENST00000598355 DSCR10P59022 87 aa8.45□□□□□ -1.06
TRIM28-213ENST00000598355 VPS25Q9BRG1 176 aa8.45□□□□□ -1.06
TRIM28-213ENST00000598355 ATP11AUNQ6ZP68 121 aa8.44□□□□□ -1.06
TRIM28-213ENST00000598355 A0A1B0GW54 56 aa8.43□□□□□ -1.06
TRIM28-213ENST00000598355 DEFB116Q30KQ4 102 aa8.43□□□□□ -1.06
TRIM28-213ENST00000598355 A0A1W2PPM0 123 aa8.42□□□□□ -1.06
TRIM28-213ENST00000598355 PDE6GP18545 87 aa8.42□□□□□ -1.06
TRIM28-213ENST00000598355 LINC00313P59037 77 aa8.42□□□□□ -1.06
TRIM28-213ENST00000598355 MT1HP80294 61 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms