RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 KIF14Q15058 1648 aa-1.15□□□□□ -2.59
SMCHD1-204ENST00000581226 ARFGEF2Q9Y6D5 1785 aa-1.15□□□□□ -2.59
SMCHD1-204ENST00000581226 K7EP34 96 aa-1.15□□□□□ -2.59
SMCHD1-204ENST00000581226 PLIN4Q96Q06 1357 aa-1.17□□□□□ -2.6
SMCHD1-204ENST00000581226 MAP3K4Q9Y6R4 1608 aa-1.17□□□□□ -2.6
SMCHD1-204ENST00000581226 RPL38P63173 70 aaKnown RBP-1.17□□□□□ -2.6
SMCHD1-204ENST00000581226 WDR87Q6ZQQ6 2873 aa-1.17□□□□□ -2.6
SMCHD1-204ENST00000581226 NCOA2Q15596 1464 aa-1.18□□□□□ -2.6
SMCHD1-204ENST00000581226 CEP290O15078 2479 aa-1.18□□□□□ -2.6
SMCHD1-204ENST00000581226 CYB5AP00167 134 aa-1.18□□□□□ -2.6
SMCHD1-204ENST00000581226 WFDC9Q8NEX5 89 aa-1.18□□□□□ -2.6
SMCHD1-204ENST00000581226 UTP20O75691 2785 aaKnown RBP-1.19□□□□□ -2.6
SMCHD1-204ENST00000581226 S100A16Q96FQ6 103 aaKnown RBP-1.19□□□□□ -2.6
SMCHD1-204ENST00000581226 RABAC1Q9UI14 185 aa-1.19□□□□□ -2.6
SMCHD1-204ENST00000581226 MTORP42345 2549 aa-1.2□□□□□ -2.6
SMCHD1-204ENST00000581226 DIP2BQ9P265 1576 aa-1.2□□□□□ -2.6
SMCHD1-204ENST00000581226 NBEAL2Q6ZNJ1 2754 aa-1.2□□□□□ -2.6
SMCHD1-204ENST00000581226 SNRPFP62306 86 aaKnown RBP-1.2□□□□□ -2.6
SMCHD1-204ENST00000581226 TDRG1Q3Y452 100 aa-1.2□□□□□ -2.6
SMCHD1-204ENST00000581226 LINC00643Q86TS7 51 aa-1.2□□□□□ -2.6
SMCHD1-204ENST00000581226 PIK3C2BO00750 1634 aa-1.21□□□□□ -2.6
SMCHD1-204ENST00000581226 MT4P47944 62 aa-1.21□□□□□ -2.6
SMCHD1-204ENST00000581226 V9GYS6 101 aa-1.21□□□□□ -2.6
SMCHD1-204ENST00000581226 MAGI3Q5TCQ9 1506 aa-1.21□□□□□ -2.6
SMCHD1-204ENST00000581226 CEBPZOSA8MTT3 80 aa-1.22□□□□□ -2.6
SMCHD1-204ENST00000581226 H0YAA0 97 aa-1.22□□□□□ -2.6
SMCHD1-204ENST00000581226 FAM186AA6NE01 2351 aa-1.22□□□□□ -2.61
SMCHD1-204ENST00000581226 H3BNG1 76 aa-1.23□□□□□ -2.61
SMCHD1-204ENST00000581226 Q9H521 79 aa-1.23□□□□□ -2.61
SMCHD1-204ENST00000581226 DNAH1Q9P2D7 4330 aa-1.23□□□□□ -2.61
SMCHD1-204ENST00000581226 SACSQ9NZJ4 4579 aa-1.24□□□□□ -2.61
SMCHD1-204ENST00000581226 LINC00158P58513 81 aa-1.24□□□□□ -2.61
SMCHD1-204ENST00000581226 PRO3102Q9H379 93 aa-1.24□□□□□ -2.61
SMCHD1-204ENST00000581226 PLCH1Q4KWH8 1693 aa-1.24□□□□□ -2.61
SMCHD1-204ENST00000581226 EPPK1P58107 5090 aaKnown RBP-1.24□□□□□ -2.61
SMCHD1-204ENST00000581226 A0A0C4DFX4 3053 aa-1.24□□□□□ -2.61
SMCHD1-204ENST00000581226 URB2Q14146 1524 aaKnown RBP-1.25□□□□□ -2.61
SMCHD1-204ENST00000581226 DDX60LQ5H9U9 1706 aaKnown RBP-1.25□□□□□ -2.61
SMCHD1-204ENST00000581226 LCE6AA0A183 80 aa-1.25□□□□□ -2.61
SMCHD1-204ENST00000581226 PVALEFA0A1B0GWK0 134 aa-1.25□□□□□ -2.61
SMCHD1-204ENST00000581226 ACACAQ13085 2346 aa-1.25□□□□□ -2.61
SMCHD1-204ENST00000581226 PKD1L2Q7Z442 2459 aa-1.26□□□□□ -2.61
SMCHD1-204ENST00000581226 C3orf79P0CE67 100 aa-1.26□□□□□ -2.61
SMCHD1-204ENST00000581226 DEPDC5O75140 1603 aa-1.27□□□□□ -2.61
SMCHD1-204ENST00000581226 CCDC168Q8NDH2 2452 aa-1.27□□□□□ -2.61
SMCHD1-204ENST00000581226 MGAM2Q2M2H8 2515 aa-1.28□□□□□ -2.61
SMCHD1-204ENST00000581226 NDUFB1O75438 58 aa-1.28□□□□□ -2.61
SMCHD1-204ENST00000581226 IFI6P09912 130 aa-1.29□□□□□ -2.62
SMCHD1-204ENST00000581226 ACYP1P07311 99 aa-1.3□□□□□ -2.62
SMCHD1-204ENST00000581226 CFAP43Q8NDM7 1665 aa-1.3□□□□□ -2.62
SMCHD1-204ENST00000581226 MAP3K1Q13233 1512 aa-1.3□□□□□ -2.62
SMCHD1-204ENST00000581226 DNAH2Q9P225 4427 aa-1.31□□□□□ -2.62
SMCHD1-204ENST00000581226 TJP1Q07157 1748 aa-1.31□□□□□ -2.62
SMCHD1-204ENST00000581226 C9orf92A6NGG3 77 aa-1.31□□□□□ -2.62
SMCHD1-204ENST00000581226 DOPEY1Q5JWR5 2465 aa-1.31□□□□□ -2.62
SMCHD1-204ENST00000581226 RICTORQ6R327 1708 aa-1.32□□□□□ -2.62
SMCHD1-204ENST00000581226 RANBP2P49792 3224 aaKnown RBP-1.32□□□□□ -2.62
SMCHD1-204ENST00000581226 RYR3Q15413 4870 aa-1.32□□□□□ -2.62
SMCHD1-204ENST00000581226 UMAD1C9J7I0 102 aa-1.33□□□□□ -2.62
SMCHD1-204ENST00000581226 LYNX1G3V0Z9 82 aa-1.33□□□□□ -2.62
SMCHD1-204ENST00000581226 CCDC88BA6NC98 1476 aa-1.33□□□□□ -2.62
SMCHD1-204ENST00000581226 TEX15Q9BXT5 2789 aa-1.34□□□□□ -2.62
SMCHD1-204ENST00000581226 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-1.34□□□□□ -2.62
SMCHD1-204ENST00000581226 ITSN1Q15811 1721 aa-1.34□□□□□ -2.62
SMCHD1-204ENST00000581226 DEFA5Q01523 94 aa-1.34□□□□□ -2.62
SMCHD1-204ENST00000581226 DNAH8Q96JB1 4490 aa-1.34□□□□□ -2.62
SMCHD1-204ENST00000581226 ACACBO00763 2458 aa-1.34□□□□□ -2.62
SMCHD1-204ENST00000581226 DEFB130BP0DP73 79 aa-1.35□□□□□ -2.63
SMCHD1-204ENST00000581226 DEFB130AP0DP74 79 aa-1.35□□□□□ -2.63
SMCHD1-204ENST00000581226 PRLHP81277 87 aa-1.36□□□□□ -2.63
SMCHD1-204ENST00000581226 BPTFQ12830 3046 aa-1.36□□□□□ -2.63
SMCHD1-204ENST00000581226 TRIOO75962 3097 aa-1.36□□□□□ -2.63
SMCHD1-204ENST00000581226 RELNP78509 3460 aa-1.37□□□□□ -2.63
SMCHD1-204ENST00000581226 UACAQ9BZF9 1416 aa-1.37□□□□□ -2.63
SMCHD1-204ENST00000581226 NDUFA4O00483 81 aa-1.37□□□□□ -2.63
SMCHD1-204ENST00000581226 IFI27P40305 119 aaPredicted RBP-1.37□□□□□ -2.63
SMCHD1-204ENST00000581226 ANKRD50Q9ULJ7 1429 aa-1.38□□□□□ -2.63
SMCHD1-204ENST00000581226 DEFB121Q5J5C9 76 aa-1.38□□□□□ -2.63
SMCHD1-204ENST00000581226 MED14O60244 1454 aa-1.38□□□□□ -2.63
SMCHD1-204ENST00000581226 ZC3H13Q5T200 1668 aaKnown RBP-1.39□□□□□ -2.63
SMCHD1-204ENST00000581226 HYDINQ4G0P3 5121 aa-1.39□□□□□ -2.63
SMCHD1-204ENST00000581226 HMGA1P17096 107 aaKnown RBP-1.39□□□□□ -2.63
SMCHD1-204ENST00000581226 NREPQ16612 68 aa-1.39□□□□□ -2.63
SMCHD1-204ENST00000581226 RNF17Q9BXT8 1623 aaKnown RBP-1.4□□□□□ -2.63
SMCHD1-204ENST00000581226 RYR1P21817 5038 aa-1.4□□□□□ -2.63
SMCHD1-204ENST00000581226 KANTRA0A1W2PQU2 76 aa-1.4□□□□□ -2.63
SMCHD1-204ENST00000581226 SPENQ96T58 3664 aaKnown RBP-1.41□□□□□ -2.63
SMCHD1-204ENST00000581226 IAPPP10997 89 aa-1.42□□□□□ -2.64
SMCHD1-204ENST00000581226 ANKRD36CQ5JPF3 1778 aa-1.42□□□□□ -2.64
SMCHD1-204ENST00000581226 ATP5EP2Q5VTU8 51 aa-1.43□□□□□ -2.64
SMCHD1-204ENST00000581226 S4R3F8 94 aa-1.43□□□□□ -2.64
SMCHD1-204ENST00000581226 GNG2P59768 71 aa-1.44□□□□□ -2.64
SMCHD1-204ENST00000581226 ST20Q9HBF5 79 aa-1.44□□□□□ -2.64
SMCHD1-204ENST00000581226 BIRC6Q9NR09 4857 aa-1.44□□□□□ -2.64
SMCHD1-204ENST00000581226 PLECQ15149 4684 aaKnown RBP-1.45□□□□□ -2.64
SMCHD1-204ENST00000581226 FRYQ5TBA9 3013 aa-1.45□□□□□ -2.64
SMCHD1-204ENST00000581226 SMIM13P0DJ93 91 aa-1.45□□□□□ -2.64
SMCHD1-204ENST00000581226 CD163L1Q9NR16 1453 aa-1.45□□□□□ -2.64
SMCHD1-204ENST00000581226 RIF1Q5UIP0 2472 aaKnown RBP-1.45□□□□□ -2.64
SMCHD1-204ENST00000581226 DCAF1Q9Y4B6 1507 aa-1.45□□□□□ -2.64
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms