RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PLA2G1BP04054 148 aaKnown RBP6.36□□□□□ -1.39
VPS53-220ENST00000576149 Q75L30 129 aa6.36□□□□□ -1.39
VPS53-220ENST00000576149 SMIM29Q86T20 159 aa6.36□□□□□ -1.39
VPS53-220ENST00000576149 Q8NBF4 154 aa6.36□□□□□ -1.39
VPS53-220ENST00000576149 BPY2O14599 106 aa6.35□□□□□ -1.39
VPS53-220ENST00000576149 IGKV4-1P06312 121 aa6.35□□□□□ -1.39
VPS53-220ENST00000576149 C20orf197Q8N268 126 aa6.35□□□□□ -1.39
VPS53-220ENST00000576149 Q8N9L7 120 aa6.35□□□□□ -1.39
VPS53-220ENST00000576149 SPRR4Q96PI1 79 aa6.35□□□□□ -1.39
VPS53-220ENST00000576149 FP248Q71RG6 208 aaPredicted RBP6.34□□□□□ -1.39
VPS53-220ENST00000576149 LRCOL1A6NCL2 159 aa6.34□□□□□ -1.4
VPS53-220ENST00000576149 PRLHP81277 87 aa6.34□□□□□ -1.4
VPS53-220ENST00000576149 KTN1-AS1Q86SY8 53 aa6.34□□□□□ -1.4
VPS53-220ENST00000576149 SMIM26A0A096LP01 95 aa6.33□□□□□ -1.4
VPS53-220ENST00000576149 NBDYA0A0U1RRE5 68 aa6.33□□□□□ -1.4
VPS53-220ENST00000576149 NUPR2A6NF83 97 aa6.33□□□□□ -1.4
VPS53-220ENST00000576149 C9orf163Q8N9P6 203 aa6.33□□□□□ -1.4
VPS53-220ENST00000576149 CHTF8P0CG12 524 aa6.33□□□□□ -1.4
VPS53-220ENST00000576149 FAM30AQ9NZY2 134 aa6.33□□□□□ -1.4
VPS53-220ENST00000576149 PHF5AQ7RTV0 110 aaKnown RBP6.31□□□□□ -1.4
VPS53-220ENST00000576149 LINC00476Q8WZB0 136 aa6.31□□□□□ -1.4
VPS53-220ENST00000576149 CSMD3Q7Z407 3707 aa6.31□□□□□ -1.4
VPS53-220ENST00000576149 KLKP1Q107X0 134 aa6.31□□□□□ -1.4
VPS53-220ENST00000576149 Q6ZRN7 208 aaPredicted RBP6.31□□□□□ -1.4
VPS53-220ENST00000576149 KRTAP11-1Q8IUC1 163 aa6.31□□□□□ -1.4
VPS53-220ENST00000576149 HIGD2AQ9BW72 106 aa6.31□□□□□ -1.4
VPS53-220ENST00000576149 DNAH7Q8WXX0 4024 aa6.31□□□□□ -1.4
VPS53-220ENST00000576149 PLECQ15149 4684 aaKnown RBP6.3□□□□□ -1.4
VPS53-220ENST00000576149 F8WEM9 126 aa6.3□□□□□ -1.4
VPS53-220ENST00000576149 SERP1Q9Y6X1 66 aa6.3□□□□□ -1.4
VPS53-220ENST00000576149 IGLV8-61A0A075B6I0 122 aa6.29□□□□□ -1.4
VPS53-220ENST00000576149 H0Y9J4 135 aa6.29□□□□□ -1.4
VPS53-220ENST00000576149 IGFL1Q6UW32 110 aa6.29□□□□□ -1.4
VPS53-220ENST00000576149 H7BZZ5 65 aa6.28□□□□□ -1.4
VPS53-220ENST00000576149 LINC00474Q9P2X8 69 aa6.28□□□□□ -1.4
VPS53-220ENST00000576149 A0A0G2JQZ4 141 aa6.27□□□□□ -1.41
VPS53-220ENST00000576149 A8MUN3 132 aa6.27□□□□□ -1.41
VPS53-220ENST00000576149 OCR1Q9BZK8 76 aa6.27□□□□□ -1.41
VPS53-220ENST00000576149 SNURFQ9Y675 71 aa6.27□□□□□ -1.41
VPS53-220ENST00000576149 DSCR10P59022 87 aa6.27□□□□□ -1.41
VPS53-220ENST00000576149 SPRR1BP22528 89 aa6.26□□□□□ -1.41
VPS53-220ENST00000576149 PANO1I0J062 215 aa6.26□□□□□ -1.41
VPS53-220ENST00000576149 UBE2AP49459 152 aa6.26□□□□□ -1.41
VPS53-220ENST00000576149 NDUFS5O43920 106 aa6.25□□□□□ -1.41
VPS53-220ENST00000576149 TMEM254Q8TBM7 123 aa6.24□□□□□ -1.41
VPS53-220ENST00000576149 VPS13DQ5THJ4 4388 aa6.23□□□□□ -1.41
VPS53-220ENST00000576149 K7EQZ3 153 aa6.23□□□□□ -1.41
VPS53-220ENST00000576149 NDUFC1O43677 76 aa6.23□□□□□ -1.41
VPS53-220ENST00000576149 TENM2Q9NT68 2774 aa6.23□□□□□ -1.41
VPS53-220ENST00000576149 A0A087WSZ3 146 aa6.22□□□□□ -1.41
VPS53-220ENST00000576149 KRTAP13-1Q8IUC0 172 aa6.22□□□□□ -1.41
VPS53-220ENST00000576149 SPACA4Q8TDM5 124 aa6.22□□□□□ -1.41
VPS53-220ENST00000576149 A0A087WTM6 91 aa6.21□□□□□ -1.41
VPS53-220ENST00000576149 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.21□□□□□ -1.41
VPS53-220ENST00000576149 STARD9Q9P2P6 4700 aa6.21□□□□□ -1.42
VPS53-220ENST00000576149 LINC00313P59037 77 aa6.21□□□□□ -1.42
VPS53-220ENST00000576149 PRKDCP78527 4128 aaKnown RBP6.2□□□□□ -1.42
VPS53-220ENST00000576149 DEFB116Q30KQ4 102 aa6.19□□□□□ -1.42
VPS53-220ENST00000576149 Q6ZR54 194 aa6.18□□□□□ -1.42
VPS53-220ENST00000576149 LCE6AA0A183 80 aa6.18□□□□□ -1.42
VPS53-220ENST00000576149 HCG22E2RYF7 251 aa6.18□□□□□ -1.42
VPS53-220ENST00000576149 FAM229AH3BQW9 127 aa6.18□□□□□ -1.42
VPS53-220ENST00000576149 RTL8CO15255 209 aa6.16□□□□□ -1.42
VPS53-220ENST00000576149 LCA10Q71F78 164 aa6.16□□□□□ -1.42
VPS53-220ENST00000576149 MP68P56378 58 aa6.16□□□□□ -1.42
VPS53-220ENST00000576149 ATP5EP56381 51 aaPredicted RBP6.15□□□□□ -1.43
VPS53-220ENST00000576149 LINC00472Q9H8W2 130 aa6.15□□□□□ -1.43
VPS53-220ENST00000576149 DNAH2Q9P225 4427 aa6.14□□□□□ -1.43
VPS53-220ENST00000576149 RPL37AP61513 92 aaKnown RBP6.14□□□□□ -1.43
VPS53-220ENST00000576149 SRRM2Q9UQ35 2752 aaKnown RBP6.14□□□□□ -1.43
VPS53-220ENST00000576149 PLAC8Q9NZF1 115 aa6.13□□□□□ -1.43
VPS53-220ENST00000576149 LINC00483Q53H64 154 aa6.13□□□□□ -1.43
VPS53-220ENST00000576149 KMT2AQ03164 3969 aa6.12□□□□□ -1.43
VPS53-220ENST00000576149 IGLV5-52A0A0A0MRZ9 124 aa6.12□□□□□ -1.43
VPS53-220ENST00000576149 ZNF706Q9Y5V0 76 aaPredicted RBP6.12□□□□□ -1.43
VPS53-220ENST00000576149 DNAH17Q9UFH2 4485 aa6.12□□□□□ -1.43
VPS53-220ENST00000576149 KRTAP29-1A8MX34 341 aaPredicted RBP6.11□□□□□ -1.43
VPS53-220ENST00000576149 WFDC13Q8IUB5 93 aa6.11□□□□□ -1.43
VPS53-220ENST00000576149 PSORS1C2Q9UIG4 136 aa6.11□□□□□ -1.43
VPS53-220ENST00000576149 A8MWP4 228 aa6.11□□□□□ -1.43
VPS53-220ENST00000576149 ZCCHC13Q8WW36 166 aaKnown RBP6.11□□□□□ -1.43
VPS53-220ENST00000576149 C1orf134Q5TEV5 83 aa6.1□□□□□ -1.43
VPS53-220ENST00000576149 HECTD4Q9Y4D8 3996 aa6.1□□□□□ -1.43
VPS53-220ENST00000576149 IGLV9-49A0A0B4J1Y8 123 aa6.1□□□□□ -1.43
VPS53-220ENST00000576149 MEGF8Q7Z7M0 2845 aa6.09□□□□□ -1.43
VPS53-220ENST00000576149 ZNF861PO60384 105 aa6.08□□□□□ -1.44
VPS53-220ENST00000576149 CASC2Q6XLA1 102 aa6.08□□□□□ -1.44
VPS53-220ENST00000576149 WWC2-AS2Q96NR7 200 aa6.08□□□□□ -1.44
VPS53-220ENST00000576149 DNAH8Q96JB1 4490 aa6.07□□□□□ -1.44
VPS53-220ENST00000576149 Q96NJ1 140 aa6.06□□□□□ -1.44
VPS53-220ENST00000576149 DNHD1Q96M86 4753 aa6.06□□□□□ -1.44
VPS53-220ENST00000576149 IGHV6-1A0A0B4J1U7 121 aa6.05□□□□□ -1.44
VPS53-220ENST00000576149 LY6G6CO95867 125 aa6.05□□□□□ -1.44
VPS53-220ENST00000576149 MOBPQ13875 183 aa6.04□□□□□ -1.44
VPS53-220ENST00000576149 LINC01554Q52M75 96 aa6.04□□□□□ -1.44
VPS53-220ENST00000576149 MMP24-AS1A0A0U1RRL7 71 aa6.04□□□□□ -1.44
VPS53-220ENST00000576149 NDUFB1O75438 58 aa6.04□□□□□ -1.44
VPS53-220ENST00000576149 ANAPC11Q9NYG5 84 aa6.04□□□□□ -1.44
VPS53-220ENST00000576149 C7orf65Q6ZTY9 151 aa6.03□□□□□ -1.44
VPS53-220ENST00000576149 MPLKIPQ8TAP9 179 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms