RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 SMIM29Q86T20 159 aa4.09□□□□□ -1.75
SPG11-213ENST00000558988 Q8N377 158 aa4.09□□□□□ -1.75
SPG11-213ENST00000558988 HIST1H2BKO60814 126 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 HIST1H2BJP06899 126 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 HIST1H2BOP23527 126 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 HIST1H2BBP33778 126 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 HIST1H2BDP58876 126 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 HIST1H2BCP62807 126 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 HIST2H2BEQ16778 126 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.08□□□□□ -1.76
SPG11-213ENST00000558988 DEFB105AQ8NG35 78 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 LINC00308Q8TCZ7 52 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 HIST1H2BHQ93079 126 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 HIST1H2BNQ99877 126 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 HIST1H2BMQ99879 126 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 SPANXCQ9NY87 97 aa4.08□□□□□ -1.76
SPG11-213ENST00000558988 KRTDAPP60985 99 aa4.07□□□□□ -1.76
SPG11-213ENST00000558988 Q1RN00 199 aa4.07□□□□□ -1.76
SPG11-213ENST00000558988 COX7BP24311 80 aa4.06□□□□□ -1.76
SPG11-213ENST00000558988 LINC01547P58512 204 aaPredicted RBP4.06□□□□□ -1.76
SPG11-213ENST00000558988 TAL2Q16559 108 aa4.06□□□□□ -1.76
SPG11-213ENST00000558988 ASB16-AS1Q495Z4 193 aa4.06□□□□□ -1.76
SPG11-213ENST00000558988 C6orf99Q4VX62 202 aa4.06□□□□□ -1.76
SPG11-213ENST00000558988 LINC01545Q5VT33 79 aa4.06□□□□□ -1.76
SPG11-213ENST00000558988 SCGB1D4Q6XE38 83 aa4.06□□□□□ -1.76
SPG11-213ENST00000558988 ATOH7Q8N100 152 aa4.06□□□□□ -1.76
SPG11-213ENST00000558988 LITAFQ99732 161 aa4.06□□□□□ -1.76
SPG11-213ENST00000558988 KRTAP4-1Q9BYQ7 146 aa4.06□□□□□ -1.76
SPG11-213ENST00000558988 CBY1Q9Y3M2 126 aa4.06□□□□□ -1.76
SPG11-213ENST00000558988 C9orf92A6NGG3 77 aa4.05□□□□□ -1.76
SPG11-213ENST00000558988 H7C2G1 150 aa4.05□□□□□ -1.76
SPG11-213ENST00000558988 TIMM17BO60830 172 aa4.05□□□□□ -1.76
SPG11-213ENST00000558988 C3orf79P0CE67 100 aa4.05□□□□□ -1.76
SPG11-213ENST00000558988 RPS29P62273 56 aaKnown RBP4.05□□□□□ -1.76
SPG11-213ENST00000558988 SPANXDQ9BXN6 97 aa4.05□□□□□ -1.76
SPG11-213ENST00000558988 DHRS4-AS1Q9P1J3 65 aa4.05□□□□□ -1.76
SPG11-213ENST00000558988 LAMTOR3Q9UHA4 124 aa4.05□□□□□ -1.76
SPG11-213ENST00000558988 A6NDN8 102 aa4.04□□□□□ -1.76
SPG11-213ENST00000558988 SLC25A34Q6PIV7 304 aa4.04□□□□□ -1.76
SPG11-213ENST00000558988 MUC2Q02817 5179 aa4.03□□□□□ -1.76
SPG11-213ENST00000558988 A0A0G2JQZ4 141 aa4.03□□□□□ -1.76
SPG11-213ENST00000558988 C20orf202A1L168 122 aa4.03□□□□□ -1.76
SPG11-213ENST00000558988 LIMD2Q9BT23 127 aa4.03□□□□□ -1.76
SPG11-213ENST00000558988 SPRR1BP22528 89 aa4.02□□□□□ -1.77
SPG11-213ENST00000558988 ELOF1P60002 83 aaKnown RBP4.02□□□□□ -1.77
SPG11-213ENST00000558988 TEX49A0A1B0GTD5 131 aa4.01□□□□□ -1.77
SPG11-213ENST00000558988 PCOTHQ58A44 107 aa4.01□□□□□ -1.77
SPG11-213ENST00000558988 FAM218AQ96MZ4 157 aa4.01□□□□□ -1.77
SPG11-213ENST00000558988 IGLV8-61A0A075B6I0 122 aa4□□□□□ -1.77
SPG11-213ENST00000558988 KRTAP12-2P59991 146 aa4□□□□□ -1.77
SPG11-213ENST00000558988 PCP2Q8IVA1 136 aa4□□□□□ -1.77
SPG11-213ENST00000558988 MUSTN1Q8IVN3 82 aa4□□□□□ -1.77
SPG11-213ENST00000558988 PRO1933Q9H354 126 aa4□□□□□ -1.77
SPG11-213ENST00000558988 A0A1B0GWB2 263 aa3.99□□□□□ -1.77
SPG11-213ENST00000558988 AKR1D1P51857 326 aa3.99□□□□□ -1.77
SPG11-213ENST00000558988 COPS9Q8WXC6 57 aa3.99□□□□□ -1.77
SPG11-213ENST00000558988 CFC1BP0CG36 223 aa3.98□□□□□ -1.77
SPG11-213ENST00000558988 CFC1P0CG37 223 aa3.98□□□□□ -1.77
SPG11-213ENST00000558988 IFITM1P13164 125 aa3.98□□□□□ -1.77
SPG11-213ENST00000558988 COA6Q5JTJ3 125 aaKnown RBP3.97□□□□□ -1.77
SPG11-213ENST00000558988 SMIM11BQ8TCY0 68 aa3.97□□□□□ -1.77
SPG11-213ENST00000558988 TRAV13-2A0A0B4J235 113 aa3.96□□□□□ -1.78
SPG11-213ENST00000558988 TRBV7-6A0A0J9YX20 115 aa3.96□□□□□ -1.78
SPG11-213ENST00000558988 F8WEM9 126 aa3.96□□□□□ -1.78
SPG11-213ENST00000558988 IGLV5-48A0A075B6I7 105 aa3.95□□□□□ -1.78
SPG11-213ENST00000558988 HSBP1L1C9JCN9 74 aa3.95□□□□□ -1.78
SPG11-213ENST00000558988 S100A2P29034 98 aa3.95□□□□□ -1.78
SPG11-213ENST00000558988 CD164Q04900 197 aa3.95□□□□□ -1.78
SPG11-213ENST00000558988 C1orf195Q5TG92 126 aa3.95□□□□□ -1.78
SPG11-213ENST00000558988 Q6ZVH6 145 aa3.95□□□□□ -1.78
SPG11-213ENST00000558988 C12orf57Q99622 126 aa3.95□□□□□ -1.78
SPG11-213ENST00000558988 NHP2Q9NX24 153 aaKnown RBP3.95□□□□□ -1.78
SPG11-213ENST00000558988 VAMP3Q15836 100 aa3.94□□□□□ -1.78
SPG11-213ENST00000558988 FAT4Q6V0I7 4981 aa3.93□□□□□ -1.78
SPG11-213ENST00000558988 TCL1BO95988 128 aa3.93□□□□□ -1.78
SPG11-213ENST00000558988 Q6ZQY7 126 aa3.93□□□□□ -1.78
SPG11-213ENST00000558988 MTURNQ8N3F0 131 aa3.93□□□□□ -1.78
SPG11-213ENST00000558988 PRAC1Q96KF2 57 aa3.93□□□□□ -1.78
SPG11-213ENST00000558988 LINC00575Q6W349 94 aa3.92□□□□□ -1.78
SPG11-213ENST00000558988 COX6B2Q6YFQ2 88 aa3.92□□□□□ -1.78
SPG11-213ENST00000558988 HIST3H2BBQ8N257 126 aa3.92□□□□□ -1.78
SPG11-213ENST00000558988 HIST1H2BLQ99880 126 aa3.92□□□□□ -1.78
SPG11-213ENST00000558988 hADV29S1A0JD25 119 aa3.91□□□□□ -1.78
SPG11-213ENST00000558988 M0R2T5 61 aa3.91□□□□□ -1.78
SPG11-213ENST00000558988 MT1HP80294 61 aa3.91□□□□□ -1.78
SPG11-213ENST00000558988 KRTAP19-2Q3LHN2 52 aa3.91□□□□□ -1.78
SPG11-213ENST00000558988 HIST1H4GQ99525 98 aa3.91□□□□□ -1.78
SPG11-213ENST00000558988 H3BUT2 72 aa3.9□□□□□ -1.79
SPG11-213ENST00000558988 S100A6P06703 90 aa3.9□□□□□ -1.79
SPG11-213ENST00000558988 RPL37P61927 97 aaKnown RBP3.9□□□□□ -1.79
SPG11-213ENST00000558988 Q5XG85 94 aa3.9□□□□□ -1.79
SPG11-213ENST00000558988 Q6Q795 121 aa3.89□□□□□ -1.79
SPG11-213ENST00000558988 IGFL1Q6UW32 110 aa3.89□□□□□ -1.79
SPG11-213ENST00000558988 CLEC2BQ92478 149 aa3.89□□□□□ -1.79
SPG11-213ENST00000558988 SNHG12Q9BXW3 62 aa3.89□□□□□ -1.79
SPG11-213ENST00000558988 TRBV7-7A0A0K0K1E9 115 aa3.88□□□□□ -1.79
SPG11-213ENST00000558988 OCIAD2Q56VL3 154 aa3.88□□□□□ -1.79
SPG11-213ENST00000558988 Q6JHZ5 121 aa3.88□□□□□ -1.79
SPG11-213ENST00000558988 OBSCN-AS1Q96MR7 158 aa3.88□□□□□ -1.79
SPG11-213ENST00000558988 MUC17Q685J3 4493 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms