RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 KMT2BQ9UMN6 2715 aaPredicted RBP7.26□□□□□ -1.25
LDLR-208ENST00000558518 REG3GQ6UW15 175 aa7.26□□□□□ -1.25
LDLR-208ENST00000558518 PMAIP1Q13794 54 aa7.25□□□□□ -1.25
LDLR-208ENST00000558518 IGFL1Q6UW32 110 aa7.25□□□□□ -1.25
LDLR-208ENST00000558518 PRR15LQ9BU68 103 aa7.25□□□□□ -1.25
LDLR-208ENST00000558518 NDUFS5O43920 106 aa7.25□□□□□ -1.25
LDLR-208ENST00000558518 KRTAP10-11P60412 298 aa7.24□□□□□ -1.25
LDLR-208ENST00000558518 H0Y9P7 68 aa7.24□□□□□ -1.25
LDLR-208ENST00000558518 CHTF8P0CG12 524 aa7.24□□□□□ -1.25
LDLR-208ENST00000558518 LINC01556Q5JQF7 62 aa7.24□□□□□ -1.25
LDLR-208ENST00000558518 J3QKU1 62 aa7.23□□□□□ -1.25
LDLR-208ENST00000558518 CASC2Q6XLA1 102 aa7.22□□□□□ -1.25
LDLR-208ENST00000558518 B9D2Q9BPU9 175 aa7.22□□□□□ -1.25
LDLR-208ENST00000558518 LINC00588Q9Y4M8 146 aa7.21□□□□□ -1.25
LDLR-208ENST00000558518 KRTAP7-1Q8IUC3 87 aa7.2□□□□□ -1.26
LDLR-208ENST00000558518 IGLV9-49A0A0B4J1Y8 123 aa7.19□□□□□ -1.26
LDLR-208ENST00000558518 A6NED7 52 aa7.19□□□□□ -1.26
LDLR-208ENST00000558518 PHF5AQ7RTV0 110 aaKnown RBP7.19□□□□□ -1.26
LDLR-208ENST00000558518 TNP2Q05952 138 aa7.16□□□□□ -1.26
LDLR-208ENST00000558518 UBE2DNLQ8IWF7 75 aa7.16□□□□□ -1.26
LDLR-208ENST00000558518 SPRR4Q96PI1 79 aa7.16□□□□□ -1.26
LDLR-208ENST00000558518 KRTAP4-16G5E9R7 235 aaPredicted RBP7.15□□□□□ -1.26
LDLR-208ENST00000558518 NDUFB1O75438 58 aa7.15□□□□□ -1.26
LDLR-208ENST00000558518 SPAG11AQ6PDA7 123 aa7.14□□□□□ -1.27
LDLR-208ENST00000558518 Q1T7F1 81 aa7.14□□□□□ -1.27
LDLR-208ENST00000558518 ZCCHC13Q8WW36 166 aaKnown RBP7.13□□□□□ -1.27
LDLR-208ENST00000558518 F8WDY8 70 aa7.13□□□□□ -1.27
LDLR-208ENST00000558518 DNAH10OSP0CZ25 163 aa7.13□□□□□ -1.27
LDLR-208ENST00000558518 H3BNG1 76 aa7.12□□□□□ -1.27
LDLR-208ENST00000558518 SPRR1AP35321 89 aa7.11□□□□□ -1.27
LDLR-208ENST00000558518 SPINK6Q6UWN8 80 aa7.1□□□□□ -1.27
LDLR-208ENST00000558518 IGHV6-1A0A0B4J1U7 121 aa7.1□□□□□ -1.27
LDLR-208ENST00000558518 PRR15Q8IV56 129 aa7.1□□□□□ -1.27
LDLR-208ENST00000558518 Q5VV11 94 aa7.1□□□□□ -1.27
LDLR-208ENST00000558518 KRTAP11-1Q8IUC1 163 aa7.09□□□□□ -1.27
LDLR-208ENST00000558518 CNBPP62633 177 aaKnown RBP7.09□□□□□ -1.27
LDLR-208ENST00000558518 TLX1NBP0CAT3 122 aa7.08□□□□□ -1.28
LDLR-208ENST00000558518 COA5Q86WW8 74 aa7.08□□□□□ -1.28
LDLR-208ENST00000558518 ANAPC11Q9NYG5 84 aa7.08□□□□□ -1.28
LDLR-208ENST00000558518 Q8N9P0 234 aaPredicted RBP7.06□□□□□ -1.28
LDLR-208ENST00000558518 ANK2Q01484 3957 aa7.06□□□□□ -1.28
LDLR-208ENST00000558518 A0A1B0GW54 56 aa7.06□□□□□ -1.28
LDLR-208ENST00000558518 CDK2AP2O75956 126 aa7.06□□□□□ -1.28
LDLR-208ENST00000558518 CYP4F30PQ9H0H9 118 aa7.06□□□□□ -1.28
LDLR-208ENST00000558518 LCE6AA0A183 80 aa7.05□□□□□ -1.28
LDLR-208ENST00000558518 C16orf90A8MZG2 172 aa7.05□□□□□ -1.28
LDLR-208ENST00000558518 RETNLBQ9BQ08 111 aa7.05□□□□□ -1.28
LDLR-208ENST00000558518 KRTAP1-5Q9BYS1 174 aa7.05□□□□□ -1.28
LDLR-208ENST00000558518 PLA2G2DQ9UNK4 145 aa7.05□□□□□ -1.28
LDLR-208ENST00000558518 A8MWP4 228 aa7.04□□□□□ -1.28
LDLR-208ENST00000558518 IGLV5-37A0A075B6J1 123 aa7.02□□□□□ -1.29
LDLR-208ENST00000558518 LIMD2Q9BT23 127 aa7.02□□□□□ -1.29
LDLR-208ENST00000558518 KRTAP24-1Q3LI83 254 aa7.01□□□□□ -1.29
LDLR-208ENST00000558518 KRTAP29-1A8MX34 341 aaPredicted RBP7□□□□□ -1.29
LDLR-208ENST00000558518 LCA10Q71F78 164 aa6.99□□□□□ -1.29
LDLR-208ENST00000558518 DNAH10Q8IVF4 4471 aa6.98□□□□□ -1.29
LDLR-208ENST00000558518 CD164Q04900 197 aa6.98□□□□□ -1.29
LDLR-208ENST00000558518 PANO1I0J062 215 aa6.97□□□□□ -1.29
LDLR-208ENST00000558518 K7EIL1 84 aa6.97□□□□□ -1.29
LDLR-208ENST00000558518 MOBPQ13875 183 aa6.97□□□□□ -1.29
LDLR-208ENST00000558518 PRR26Q8N8Z3 221 aa6.97□□□□□ -1.29
LDLR-208ENST00000558518 LINC00472Q9H8W2 130 aa6.97□□□□□ -1.29
LDLR-208ENST00000558518 MMP24-AS1A0A0U1RRL7 71 aa6.96□□□□□ -1.29
LDLR-208ENST00000558518 LYSTQ99698 3801 aa6.96□□□□□ -1.3
LDLR-208ENST00000558518 SPINK7P58062 85 aa6.94□□□□□ -1.3
LDLR-208ENST00000558518 TGP01266 2768 aa6.93□□□□□ -1.3
LDLR-208ENST00000558518 A0A087X002 238 aa6.93□□□□□ -1.3
LDLR-208ENST00000558518 LOC101927531A0A1B0GV80 90 aa6.93□□□□□ -1.3
LDLR-208ENST00000558518 NOTCH2NLQ7Z3S9 236 aa6.93□□□□□ -1.3
LDLR-208ENST00000558518 SPANXA2-OT1Q8N9U9 137 aa6.93□□□□□ -1.3
LDLR-208ENST00000558518 RBM12B-AS1Q9P1G2 102 aa6.92□□□□□ -1.3
LDLR-208ENST00000558518 C8orf17Q9NRJ1 99 aa6.92□□□□□ -1.3
LDLR-208ENST00000558518 C9orf163Q8N9P6 203 aa6.91□□□□□ -1.3
LDLR-208ENST00000558518 CIRBP-AS1Q8TBR5 109 aa6.91□□□□□ -1.3
LDLR-208ENST00000558518 KTN1-AS1Q86SY8 53 aa6.91□□□□□ -1.3
LDLR-208ENST00000558518 H3BPC8 53 aa6.9□□□□□ -1.31
LDLR-208ENST00000558518 IGLV7-46A0A075B6I9 117 aa6.89□□□□□ -1.31
LDLR-208ENST00000558518 IGLV8-61A0A075B6I0 122 aa6.89□□□□□ -1.31
LDLR-208ENST00000558518 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.88□□□□□ -1.31
LDLR-208ENST00000558518 HRES1P13985 223 aa6.88□□□□□ -1.31
LDLR-208ENST00000558518 ATP11AUNQ6ZP68 121 aa6.88□□□□□ -1.31
LDLR-208ENST00000558518 PRAC1Q96KF2 57 aa6.87□□□□□ -1.31
LDLR-208ENST00000558518 Q75L30 129 aa6.87□□□□□ -1.31
LDLR-208ENST00000558518 C14orf177Q52M58 125 aa6.86□□□□□ -1.31
LDLR-208ENST00000558518 MRPL34Q9BQ48 92 aaKnown RBP6.85□□□□□ -1.31
LDLR-208ENST00000558518 A0A1B0GVX0 72 aa6.84□□□□□ -1.31
LDLR-208ENST00000558518 CDC42SE1Q9NRR8 79 aa6.84□□□□□ -1.31
LDLR-208ENST00000558518 FBN3Q75N90 2809 aa6.83□□□□□ -1.32
LDLR-208ENST00000558518 TP53AIP1Q9HCN2 124 aa6.83□□□□□ -1.32
LDLR-208ENST00000558518 MDFIQ99750 246 aa6.82□□□□□ -1.32
LDLR-208ENST00000558518 Q5W150 140 aa6.81□□□□□ -1.32
LDLR-208ENST00000558518 PSORS1C2Q9UIG4 136 aa6.8□□□□□ -1.32
LDLR-208ENST00000558518 Q96NJ1 140 aa6.8□□□□□ -1.32
LDLR-208ENST00000558518 SPINK1P00995 79 aa6.8□□□□□ -1.32
LDLR-208ENST00000558518 ADM2Q7Z4H4 148 aa6.8□□□□□ -1.32
LDLR-208ENST00000558518 SPRR1BP22528 89 aa6.79□□□□□ -1.32
LDLR-208ENST00000558518 LINC01558Q9Y6Z2 57 aa6.78□□□□□ -1.32
LDLR-208ENST00000558518 A6NN06 94 aa6.78□□□□□ -1.32
LDLR-208ENST00000558518 NBDYA0A0U1RRE5 68 aa6.78□□□□□ -1.32
LDLR-208ENST00000558518 C7orf65Q6ZTY9 151 aa6.77□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 161.2 ms