RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 DMAC1Q96GE9 116 aa4.33□□□□□ -1.72
SYNE2-216ENST00000555002 ITPR2Q14571 2701 aa4.33□□□□□ -1.72
SYNE2-216ENST00000555002 IGSF10Q6WRI0 2623 aa4.32□□□□□ -1.72
SYNE2-216ENST00000555002 M0QZ58 72 aa4.32□□□□□ -1.72
SYNE2-216ENST00000555002 SEC61BP60468 96 aaKnown RBP4.31□□□□□ -1.72
SYNE2-216ENST00000555002 MAP1AP78559 2803 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-216ENST00000555002 Q8N9P0 234 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-216ENST00000555002 ZNF292O60281 2723 aa4.29□□□□□ -1.72
SYNE2-216ENST00000555002 C10orf142B7Z368 130 aa4.28□□□□□ -1.72
SYNE2-216ENST00000555002 Q75L30 129 aa4.28□□□□□ -1.72
SYNE2-216ENST00000555002 FAM229BQ4G0N7 80 aa4.28□□□□□ -1.72
SYNE2-216ENST00000555002 UTP20O75691 2785 aaKnown RBP4.27□□□□□ -1.73
SYNE2-216ENST00000555002 ADM2Q7Z4H4 148 aa4.27□□□□□ -1.73
SYNE2-216ENST00000555002 Q5W150 140 aa4.26□□□□□ -1.73
SYNE2-216ENST00000555002 OCR1Q9BZK8 76 aa4.25□□□□□ -1.73
SYNE2-216ENST00000555002 ROMO1P60602 79 aa4.24□□□□□ -1.73
SYNE2-216ENST00000555002 MMP24-AS1A0A0U1RRL7 71 aa4.21□□□□□ -1.74
SYNE2-216ENST00000555002 NBEAL2Q6ZNJ1 2754 aa4.2□□□□□ -1.74
SYNE2-216ENST00000555002 RPL37P61927 97 aaKnown RBP4.2□□□□□ -1.74
SYNE2-216ENST00000555002 A0A096LNT2 108 aa4.2□□□□□ -1.74
SYNE2-216ENST00000555002 APCP25054 2843 aa4.19□□□□□ -1.74
SYNE2-216ENST00000555002 ASB16-AS1Q495Z4 193 aa4.19□□□□□ -1.74
SYNE2-216ENST00000555002 FP248Q71RG6 208 aaPredicted RBP4.19□□□□□ -1.74
SYNE2-216ENST00000555002 C20orf166-AS1Q96NR2 134 aa4.19□□□□□ -1.74
SYNE2-216ENST00000555002 SPATA8Q6RVD6 105 aa4.18□□□□□ -1.74
SYNE2-216ENST00000555002 LINC01558Q9Y6Z2 57 aa4.18□□□□□ -1.74
SYNE2-216ENST00000555002 EP400Q96L91 3159 aa4.17□□□□□ -1.74
SYNE2-216ENST00000555002 PLAC8Q9NZF1 115 aa4.17□□□□□ -1.74
SYNE2-216ENST00000555002 KLK9Q2XQG4 91 aa4.17□□□□□ -1.74
SYNE2-216ENST00000555002 KRTAP10-1P60331 282 aa4.16□□□□□ -1.74
SYNE2-216ENST00000555002 Q8NDZ9 215 aa4.15□□□□□ -1.74
SYNE2-216ENST00000555002 Q5VV11 94 aa4.15□□□□□ -1.75
SYNE2-216ENST00000555002 KRTAP1-3Q8IUG1 177 aa4.14□□□□□ -1.75
SYNE2-216ENST00000555002 KRTAP1-1Q07627 177 aa4.14□□□□□ -1.75
SYNE2-216ENST00000555002 FLNCQ14315 2725 aa4.13□□□□□ -1.75
SYNE2-216ENST00000555002 TRANK1O15050 2925 aa4.12□□□□□ -1.75
SYNE2-216ENST00000555002 OXTP01178 125 aa4.12□□□□□ -1.75
SYNE2-216ENST00000555002 LCE6AA0A183 80 aa4.12□□□□□ -1.75
SYNE2-216ENST00000555002 KRTAP10-2P60368 255 aa4.11□□□□□ -1.75
SYNE2-216ENST00000555002 UBR5O95071 2799 aaPredicted RBP4.11□□□□□ -1.75
SYNE2-216ENST00000555002 CEP350Q5VT06 3117 aa4.1□□□□□ -1.75
SYNE2-216ENST00000555002 PANO1I0J062 215 aa4.09□□□□□ -1.75
SYNE2-216ENST00000555002 KRTAP16-1A8MUX0 517 aa4.09□□□□□ -1.75
SYNE2-216ENST00000555002 A0A087X002 238 aa4.08□□□□□ -1.76
SYNE2-216ENST00000555002 C10orf95Q9H7T3 257 aa4.07□□□□□ -1.76
SYNE2-216ENST00000555002 LINC00472Q9H8W2 130 aa4.07□□□□□ -1.76
SYNE2-216ENST00000555002 Q5XG85 94 aa4.06□□□□□ -1.76
SYNE2-216ENST00000555002 Q6ZR54 194 aa4.06□□□□□ -1.76
SYNE2-216ENST00000555002 KRTAP1-5Q9BYS1 174 aa4.06□□□□□ -1.76
SYNE2-216ENST00000555002 SPRR1BP22528 89 aa4.06□□□□□ -1.76
SYNE2-216ENST00000555002 CYSTM1Q9H1C7 97 aa4.05□□□□□ -1.76
SYNE2-216ENST00000555002 A8MUU9 505 aa4.05□□□□□ -1.76
SYNE2-216ENST00000555002 KRTAP26-1Q6PEX3 210 aa4.05□□□□□ -1.76
SYNE2-216ENST00000555002 TENM1Q9UKZ4 2725 aa4.04□□□□□ -1.76
SYNE2-216ENST00000555002 A8MU10 97 aa4.02□□□□□ -1.77
SYNE2-216ENST00000555002 CHD9Q3L8U1 2897 aa4.02□□□□□ -1.77
SYNE2-216ENST00000555002 HIVEP1P15822 2718 aa4.01□□□□□ -1.77
SYNE2-216ENST00000555002 ITPR1Q14643 2758 aa4□□□□□ -1.77
SYNE2-216ENST00000555002 SPRR1AP35321 89 aa4□□□□□ -1.77
SYNE2-216ENST00000555002 A0A0C4DFX4 3053 aa4□□□□□ -1.77
SYNE2-216ENST00000555002 NDUFAF8A1L188 74 aa4□□□□□ -1.77
SYNE2-216ENST00000555002 TENM3Q9P273 2699 aa3.98□□□□□ -1.77
SYNE2-216ENST00000555002 DSPP15924 2871 aaKnown RBP3.96□□□□□ -1.77
SYNE2-216ENST00000555002 KRTAP25-1Q3LHN0 102 aa3.95□□□□□ -1.78
SYNE2-216ENST00000555002 TNP1P09430 55 aa3.94□□□□□ -1.78
SYNE2-216ENST00000555002 DNAH12Q6ZR08 3092 aa3.93□□□□□ -1.78
SYNE2-216ENST00000555002 NOTCH2NLQ7Z3S9 236 aa3.93□□□□□ -1.78
SYNE2-216ENST00000555002 CRYBG3Q68DQ2 2970 aa3.92□□□□□ -1.78
SYNE2-216ENST00000555002 NF1P21359 2839 aa3.92□□□□□ -1.78
SYNE2-216ENST00000555002 CHD7Q9P2D1 2997 aa3.9□□□□□ -1.79
SYNE2-216ENST00000555002 LRBAP50851 2863 aa3.9□□□□□ -1.79
SYNE2-216ENST00000555002 KRTAP10-8P60410 259 aa3.9□□□□□ -1.79
SYNE2-216ENST00000555002 A0A1B0GVY2 172 aa3.9□□□□□ -1.79
SYNE2-216ENST00000555002 P0C880 135 aa3.89□□□□□ -1.79
SYNE2-216ENST00000555002 KALRNO60229 2985 aa3.87□□□□□ -1.79
SYNE2-216ENST00000555002 C5orf42Q9H799 3197 aa3.87□□□□□ -1.79
SYNE2-216ENST00000555002 MGAQ8IWI9 3026 aa3.84□□□□□ -1.79
SYNE2-216ENST00000555002 FRYQ5TBA9 3013 aa3.84□□□□□ -1.79
SYNE2-216ENST00000555002 CFAP54Q96N23 3096 aa3.84□□□□□ -1.79
SYNE2-216ENST00000555002 KRTAP29-1A8MX34 341 aaPredicted RBP3.83□□□□□ -1.8
SYNE2-216ENST00000555002 TENM4Q6N022 2769 aa3.83□□□□□ -1.8
SYNE2-216ENST00000555002 NIPBLQ6KC79 2804 aaeCLIP3.83□□□□□ -1.8
SYNE2-216ENST00000555002 A6NN06 94 aa3.82□□□□□ -1.8
SYNE2-216ENST00000555002 ZANQ9Y493 2812 aa3.81□□□□□ -1.8
SYNE2-216ENST00000555002 KRTAP13-2Q52LG2 175 aa3.81□□□□□ -1.8
SYNE2-216ENST00000555002 KRTAP11-1Q8IUC1 163 aa3.81□□□□□ -1.8
SYNE2-216ENST00000555002 NBEAQ8NFP9 2946 aa3.8□□□□□ -1.8
SYNE2-216ENST00000555002 KRTAP4-16G5E9R7 235 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-216ENST00000555002 CELSR2Q9HCU4 2923 aa3.8□□□□□ -1.8
SYNE2-216ENST00000555002 LAMA2P24043 3122 aaKnown RBP3.8□□□□□ -1.8
SYNE2-216ENST00000555002 RPS29P62273 56 aaKnown RBP3.79□□□□□ -1.8
SYNE2-216ENST00000555002 KRTAP10-10P60014 251 aa3.79□□□□□ -1.8
SYNE2-216ENST00000555002 PDZD2O15018 2839 aa3.79□□□□□ -1.8
SYNE2-216ENST00000555002 TACC2O95359 2948 aa3.77□□□□□ -1.81
SYNE2-216ENST00000555002 VWFP04275 2813 aa3.76□□□□□ -1.81
SYNE2-216ENST00000555002 ASH1LQ9NR48 2969 aaKnown RBP3.76□□□□□ -1.81
SYNE2-216ENST00000555002 TGP01266 2768 aa3.76□□□□□ -1.81
SYNE2-216ENST00000555002 Q6ZRN7 208 aaPredicted RBP3.75□□□□□ -1.81
SYNE2-216ENST00000555002 TNRC18O15417 2968 aaPredicted RBP3.75□□□□□ -1.81
SYNE2-216ENST00000555002 TRIOO75962 3097 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 218.2 ms