RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 NPC2P61916 151 aa5.96□□□□□ -1.46
CCDC88C-206ENST00000553437 PRR4Q16378 134 aa5.96□□□□□ -1.46
CCDC88C-206ENST00000553437 C3orf22Q8N5N4 141 aa5.96□□□□□ -1.46
CCDC88C-206ENST00000553437 LINC00304Q8N9R0 145 aa5.96□□□□□ -1.46
CCDC88C-206ENST00000553437 VPS25Q9BRG1 176 aa5.96□□□□□ -1.46
CCDC88C-206ENST00000553437 SPANXDQ9BXN6 97 aa5.96□□□□□ -1.46
CCDC88C-206ENST00000553437 SPANXCQ9NY87 97 aa5.96□□□□□ -1.46
CCDC88C-206ENST00000553437 ERC2-IT1O76042 136 aa5.95□□□□□ -1.46
CCDC88C-206ENST00000553437 LINC00308Q8TCZ7 52 aa5.95□□□□□ -1.46
CCDC88C-206ENST00000553437 PRO1854Q9UHT4 67 aa5.95□□□□□ -1.46
CCDC88C-206ENST00000553437 ZNF706Q9Y5V0 76 aaPredicted RBP5.95□□□□□ -1.46
CCDC88C-206ENST00000553437 TRBV20-1A0A075B6N2 111 aa5.94□□□□□ -1.46
CCDC88C-206ENST00000553437 A4D1N5 150 aa5.94□□□□□ -1.46
CCDC88C-206ENST00000553437 H3BMG7 143 aa5.94□□□□□ -1.46
CCDC88C-206ENST00000553437 J3QR89 54 aa5.94□□□□□ -1.46
CCDC88C-206ENST00000553437 LINC00483Q53H64 154 aa5.94□□□□□ -1.46
CCDC88C-206ENST00000553437 S100A7L2Q5SY68 101 aa5.94□□□□□ -1.46
CCDC88C-206ENST00000553437 Q9BRP9 147 aa5.94□□□□□ -1.46
CCDC88C-206ENST00000553437 PRO0461Q9UI25 63 aa5.94□□□□□ -1.46
CCDC88C-206ENST00000553437 IFITM1P13164 125 aa5.93□□□□□ -1.46
CCDC88C-206ENST00000553437 Q6ZRX8 168 aa5.93□□□□□ -1.46
CCDC88C-206ENST00000553437 MUSTN1Q8IVN3 82 aa5.93□□□□□ -1.46
CCDC88C-206ENST00000553437 MUC2Q02817 5179 aa5.93□□□□□ -1.46
CCDC88C-206ENST00000553437 TRAV23DV6A0A075B6W5 121 aa5.92□□□□□ -1.46
CCDC88C-206ENST00000553437 PSMB2P49721 201 aa5.92□□□□□ -1.46
CCDC88C-206ENST00000553437 PPDPFQ9H3Y8 114 aa5.92□□□□□ -1.46
CCDC88C-206ENST00000553437 ZNF73O43830 326 aaPredicted RBP5.91□□□□□ -1.46
CCDC88C-206ENST00000553437 COPS9Q8WXC6 57 aa5.91□□□□□ -1.46
CCDC88C-206ENST00000553437 SCGB1C2P0DMR2 95 aa5.9□□□□□ -1.46
CCDC88C-206ENST00000553437 GAGE2AQ6NT46 116 aa5.9□□□□□ -1.46
CCDC88C-206ENST00000553437 RETNLBQ9BQ08 111 aa5.9□□□□□ -1.46
CCDC88C-206ENST00000553437 TCL1BO95988 128 aa5.89□□□□□ -1.47
CCDC88C-206ENST00000553437 PCP4P48539 62 aa5.89□□□□□ -1.47
CCDC88C-206ENST00000553437 Q1RN00 199 aa5.89□□□□□ -1.47
CCDC88C-206ENST00000553437 SPAG11AQ6PDA7 123 aa5.89□□□□□ -1.47
CCDC88C-206ENST00000553437 Q8NBF4 154 aa5.89□□□□□ -1.47
CCDC88C-206ENST00000553437 ETDBQ3ZM63 59 aa5.88□□□□□ -1.47
CCDC88C-206ENST00000553437 OR13C6PQ8NH95 151 aa5.88□□□□□ -1.47
CCDC88C-206ENST00000553437 ATXN8Q156A1 80 aa5.87□□□□□ -1.47
CCDC88C-206ENST00000553437 MTURNQ8N3F0 131 aa5.87□□□□□ -1.47
CCDC88C-206ENST00000553437 ST20-AS1Q8NBB2 130 aa5.87□□□□□ -1.47
CCDC88C-206ENST00000553437 COX6CP09669 75 aa5.86□□□□□ -1.47
CCDC88C-206ENST00000553437 PPDPFLQ8WWR9 84 aa5.86□□□□□ -1.47
CCDC88C-206ENST00000553437 IGLV7-46A0A075B6I9 117 aa5.85□□□□□ -1.47
CCDC88C-206ENST00000553437 IGLV9-49A0A0B4J1Y8 123 aa5.85□□□□□ -1.47
CCDC88C-206ENST00000553437 H7C2G1 150 aa5.85□□□□□ -1.47
CCDC88C-206ENST00000553437 TRIAP1O43715 76 aa5.85□□□□□ -1.47
CCDC88C-206ENST00000553437 MOBPQ13875 183 aa5.85□□□□□ -1.47
CCDC88C-206ENST00000553437 SSBP3-AS1Q7Z2R9 100 aa5.85□□□□□ -1.47
CCDC88C-206ENST00000553437 TEN1Q86WV5 123 aa5.85□□□□□ -1.47
CCDC88C-206ENST00000553437 SPINK1P00995 79 aa5.84□□□□□ -1.47
CCDC88C-206ENST00000553437 ELOF1P60002 83 aaKnown RBP5.84□□□□□ -1.47
CCDC88C-206ENST00000553437 TPRXLQ17RH7 258 aa5.84□□□□□ -1.47
CCDC88C-206ENST00000553437 C6orf99Q4VX62 202 aa5.84□□□□□ -1.47
CCDC88C-206ENST00000553437 C9JAW5 83 aa5.83□□□□□ -1.48
CCDC88C-206ENST00000553437 SLC25A20O43772 301 aa5.83□□□□□ -1.48
CCDC88C-206ENST00000553437 SPRR1BP22528 89 aa5.83□□□□□ -1.48
CCDC88C-206ENST00000553437 DHRS4-AS1Q9P1J3 65 aa5.83□□□□□ -1.48
CCDC88C-206ENST00000553437 SCGB1A1P11684 91 aa5.82□□□□□ -1.48
CCDC88C-206ENST00000553437 COX7BP24311 80 aa5.82□□□□□ -1.48
CCDC88C-206ENST00000553437 ANKRD29Q8N6D5 301 aa5.82□□□□□ -1.48
CCDC88C-206ENST00000553437 MUC17Q685J3 4493 aa5.82□□□□□ -1.48
CCDC88C-206ENST00000553437 TRBV7-6A0A0J9YX20 115 aa5.81□□□□□ -1.48
CCDC88C-206ENST00000553437 KRTAP9-7A8MTY7 169 aa5.81□□□□□ -1.48
CCDC88C-206ENST00000553437 H3BT86 120 aa5.81□□□□□ -1.48
CCDC88C-206ENST00000553437 RPS29P62273 56 aaKnown RBP5.81□□□□□ -1.48
CCDC88C-206ENST00000553437 FP248Q71RG6 208 aaPredicted RBP5.81□□□□□ -1.48
CCDC88C-206ENST00000553437 SIGMAR1Q99720 223 aa5.81□□□□□ -1.48
CCDC88C-206ENST00000553437 LST1O00453 97 aa5.8□□□□□ -1.48
CCDC88C-206ENST00000553437 TRAV13-2A0A0B4J235 113 aa5.79□□□□□ -1.48
CCDC88C-206ENST00000553437 C9orf153Q5TBE3 101 aa5.79□□□□□ -1.48
CCDC88C-206ENST00000553437 Q8N377 158 aa5.79□□□□□ -1.48
CCDC88C-206ENST00000553437 CDIP1Q9H305 208 aa5.78□□□□□ -1.48
CCDC88C-206ENST00000553437 LINC01547P58512 204 aaPredicted RBP5.77□□□□□ -1.49
CCDC88C-206ENST00000553437 KRTAP13-3Q3SY46 172 aa5.77□□□□□ -1.49
CCDC88C-206ENST00000553437 SMIM11BQ8TCY0 68 aa5.77□□□□□ -1.49
CCDC88C-206ENST00000553437 IGLV5-48A0A075B6I7 105 aa5.76□□□□□ -1.49
CCDC88C-206ENST00000553437 SMIM29Q86T20 159 aa5.76□□□□□ -1.49
CCDC88C-206ENST00000553437 CLEC2BQ92478 149 aa5.76□□□□□ -1.49
CCDC88C-206ENST00000553437 LAMTOR3Q9UHA4 124 aa5.76□□□□□ -1.49
CCDC88C-206ENST00000553437 TEX49A0A1B0GTD5 131 aa5.75□□□□□ -1.49
CCDC88C-206ENST00000553437 TRACP01848 142 aa5.75□□□□□ -1.49
CCDC88C-206ENST00000553437 DEFB105AQ8NG35 78 aa5.75□□□□□ -1.49
CCDC88C-206ENST00000553437 FSIP2Q5CZC0 6907 aa5.73□□□□□ -1.49
CCDC88C-206ENST00000553437 FAM240AA0A1B0GVK7 77 aa5.71□□□□□ -1.5
CCDC88C-206ENST00000553437 H0YGX0 51 aa5.71□□□□□ -1.5
CCDC88C-206ENST00000553437 CD164Q04900 197 aa5.71□□□□□ -1.5
CCDC88C-206ENST00000553437 HRCT1Q6UXD1 115 aa5.71□□□□□ -1.5
CCDC88C-206ENST00000553437 LINC00575Q6W349 94 aa5.71□□□□□ -1.5
CCDC88C-206ENST00000553437 A0A0G2JQZ4 141 aa5.69□□□□□ -1.5
CCDC88C-206ENST00000553437 MT-ATP8P03928 68 aa5.69□□□□□ -1.5
CCDC88C-206ENST00000553437 LIMD2Q9BT23 127 aa5.69□□□□□ -1.5
CCDC88C-206ENST00000553437 ACYP1P07311 99 aa5.68□□□□□ -1.5
CCDC88C-206ENST00000553437 BAALC-AS2P0C853 105 aa5.68□□□□□ -1.5
CCDC88C-206ENST00000553437 ASB16-AS1Q495Z4 193 aa5.68□□□□□ -1.5
CCDC88C-206ENST00000553437 FAM218AQ96MZ4 157 aa5.68□□□□□ -1.5
CCDC88C-206ENST00000553437 KRTAP9-3Q9BYQ3 159 aa5.68□□□□□ -1.5
CCDC88C-206ENST00000553437 A0A1B0GV72 72 aa5.67□□□□□ -1.5
CCDC88C-206ENST00000553437 hADV29S1A0JD25 119 aa5.67□□□□□ -1.5
CCDC88C-206ENST00000553437 SNCGO76070 127 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms