RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 FAM236AA0A1B0GUQ0 79 aa16.24■□□□□ 0.19
CCDC88C-205ENST00000553403 FAM236BA0A1B0GV22 79 aa16.24■□□□□ 0.19
CCDC88C-205ENST00000553403 IGLV8-61A0A075B6I0 122 aa16.23■□□□□ 0.19
CCDC88C-205ENST00000553403 A0A1W2PNM2 257 aa16.21■□□□□ 0.19
CCDC88C-205ENST00000553403 Q8NBF4 154 aa16.21■□□□□ 0.19
CCDC88C-205ENST00000553403 HECTD4Q9Y4D8 3996 aa16.21■□□□□ 0.19
CCDC88C-205ENST00000553403 CXCL6P80162 114 aa16.2■□□□□ 0.18
CCDC88C-205ENST00000553403 HAMPP81172 84 aa16.19■□□□□ 0.18
CCDC88C-205ENST00000553403 HIST1H4AP62805 103 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-205ENST00000553403 KRTAP10-2P60368 255 aa16.18■□□□□ 0.18
CCDC88C-205ENST00000553403 SPRR4Q96PI1 79 aa16.18■□□□□ 0.18
CCDC88C-205ENST00000553403 EPPK1P58107 5090 aaKnown RBP16.17■□□□□ 0.18
CCDC88C-205ENST00000553403 PSORS1C2Q9UIG4 136 aa16.16■□□□□ 0.18
CCDC88C-205ENST00000553403 NREPQ16612 68 aa16.14■□□□□ 0.18
CCDC88C-205ENST00000553403 A0A087WVE0 104 aa16.12■□□□□ 0.17
CCDC88C-205ENST00000553403 IGFL1Q6UW32 110 aa16.12■□□□□ 0.17
CCDC88C-205ENST00000553403 CRYGAP11844 174 aa16.1■□□□□ 0.17
CCDC88C-205ENST00000553403 BIRC6Q9NR09 4857 aa16.07■□□□□ 0.16
CCDC88C-205ENST00000553403 ATOX1O00244 68 aa16.07■□□□□ 0.16
CCDC88C-205ENST00000553403 ZNF706Q9Y5V0 76 aaPredicted RBP16.06■□□□□ 0.16
CCDC88C-205ENST00000553403 FRAS1Q86XX4 4008 aa16.05■□□□□ 0.16
CCDC88C-205ENST00000553403 ZNF861PO60384 105 aa16.05■□□□□ 0.16
CCDC88C-205ENST00000553403 FAM30AQ9NZY2 134 aa16.05■□□□□ 0.16
CCDC88C-205ENST00000553403 LINC00483Q53H64 154 aa16.03■□□□□ 0.16
CCDC88C-205ENST00000553403 Q6ZSA8 131 aa16.03■□□□□ 0.16
CCDC88C-205ENST00000553403 DNAH11Q96DT5 4516 aa16.03■□□□□ 0.16
CCDC88C-205ENST00000553403 SCXQ7RTU7 201 aa16.02■□□□□ 0.15
CCDC88C-205ENST00000553403 CIRBP-AS1Q8TBR5 109 aa16.02■□□□□ 0.15
CCDC88C-205ENST00000553403 BPY2O14599 106 aa16■□□□□ 0.15
CCDC88C-205ENST00000553403 KRTAP10-1P60331 282 aa16■□□□□ 0.15
CCDC88C-205ENST00000553403 A0A0G2JQZ4 141 aa15.99■□□□□ 0.15
CCDC88C-205ENST00000553403 DNAH8Q96JB1 4490 aa15.98■□□□□ 0.15
CCDC88C-205ENST00000553403 IGLV7-43P04211 117 aa15.97■□□□□ 0.15
CCDC88C-205ENST00000553403 DNAH5Q8TE73 4624 aa15.96■□□□□ 0.15
CCDC88C-205ENST00000553403 CCDC179H3BU77 68 aa15.92■□□□□ 0.14
CCDC88C-205ENST00000553403 LINC00336Q6ZUF6 198 aa15.92■□□□□ 0.14
CCDC88C-205ENST00000553403 RPL37AP61513 92 aaKnown RBP15.92■□□□□ 0.14
CCDC88C-205ENST00000553403 FAT2Q9NYQ8 4349 aa15.91■□□□□ 0.14
CCDC88C-205ENST00000553403 A0A087WSZ3 146 aa15.89■□□□□ 0.13
CCDC88C-205ENST00000553403 IGKV4-1P06312 121 aa15.89■□□□□ 0.13
CCDC88C-205ENST00000553403 COX7CP15954 63 aa15.87■□□□□ 0.13
CCDC88C-205ENST00000553403 UQCRQO14949 82 aa15.86■□□□□ 0.13
CCDC88C-205ENST00000553403 IGLV9-49A0A0B4J1Y8 123 aa15.86■□□□□ 0.13
CCDC88C-205ENST00000553403 C9orf153Q5TBE3 101 aa15.86■□□□□ 0.13
CCDC88C-205ENST00000553403 SERP2Q8N6R1 65 aa15.86■□□□□ 0.13
CCDC88C-205ENST00000553403 PKD1P98161 4303 aa15.84■□□□□ 0.13
CCDC88C-205ENST00000553403 Q8N9L7 120 aa15.84■□□□□ 0.13
CCDC88C-205ENST00000553403 DSCR10P59022 87 aa15.8■□□□□ 0.12
CCDC88C-205ENST00000553403 SMIM20Q8N5G0 67 aa15.79■□□□□ 0.12
CCDC88C-205ENST00000553403 ANAPC11Q9NYG5 84 aa15.76■□□□□ 0.11
CCDC88C-205ENST00000553403 MOBPQ13875 183 aa15.75■□□□□ 0.11
CCDC88C-205ENST00000553403 SRRM2Q9UQ35 2752 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-205ENST00000553403 TRAV7A0A075B6U4 112 aa15.72■□□□□ 0.11
CCDC88C-205ENST00000553403 A0A1B0GVY2 172 aa15.71■□□□□ 0.11
CCDC88C-205ENST00000553403 LINC00472Q9H8W2 130 aa15.7■□□□□ 0.1
CCDC88C-205ENST00000553403 K7EQZ3 153 aa15.69■□□□□ 0.1
CCDC88C-205ENST00000553403 DEFB116Q30KQ4 102 aa15.67■□□□□ 0.1
CCDC88C-205ENST00000553403 SS18L2Q9UHA2 77 aa15.64■□□□□ 0.09
CCDC88C-205ENST00000553403 J3KT08 172 aa15.63■□□□□ 0.09
CCDC88C-205ENST00000553403 SSBP3-AS1Q7Z2R9 100 aa15.61■□□□□ 0.09
CCDC88C-205ENST00000553403 HRCT1Q6UXD1 115 aa15.6■□□□□ 0.09
CCDC88C-205ENST00000553403 A8MWP4 228 aa15.57■□□□□ 0.08
CCDC88C-205ENST00000553403 FAM229BQ4G0N7 80 aa15.57■□□□□ 0.08
CCDC88C-205ENST00000553403 HCG22E2RYF7 251 aa15.57■□□□□ 0.08
CCDC88C-205ENST00000553403 LRP1BQ9NZR2 4599 aa15.56■□□□□ 0.08
CCDC88C-205ENST00000553403 CD164Q04900 197 aa15.56■□□□□ 0.08
CCDC88C-205ENST00000553403 PKHD1P08F94 4074 aa15.56■□□□□ 0.08
CCDC88C-205ENST00000553403 PRR15Q8IV56 129 aa15.55■□□□□ 0.08
CCDC88C-205ENST00000553403 Q96NJ1 140 aa15.55■□□□□ 0.08
CCDC88C-205ENST00000553403 OCR1Q9BZK8 76 aa15.55■□□□□ 0.08
CCDC88C-205ENST00000553403 HERC2O95714 4834 aa15.52■□□□□ 0.08
CCDC88C-205ENST00000553403 DYNC1H1Q14204 4646 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-205ENST00000553403 C20orf197Q8N268 126 aa15.48■□□□□ 0.07
CCDC88C-205ENST00000553403 A0A087X002 238 aa15.47■□□□□ 0.07
CCDC88C-205ENST00000553403 NDUFB1O75438 58 aa15.47■□□□□ 0.07
CCDC88C-205ENST00000553403 KRTAP1-4P0C5Y4 121 aa15.47■□□□□ 0.07
CCDC88C-205ENST00000553403 KRTAP13-2Q52LG2 175 aa15.46■□□□□ 0.07
CCDC88C-205ENST00000553403 KIAA1109Q2LD37 5005 aa15.46■□□□□ 0.06
CCDC88C-205ENST00000553403 CYSTM1Q9H1C7 97 aa15.44■□□□□ 0.06
CCDC88C-205ENST00000553403 KRTAP29-1A8MX34 341 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-205ENST00000553403 SPINK6Q6UWN8 80 aa15.42■□□□□ 0.06
CCDC88C-205ENST00000553403 KLKP1Q107X0 134 aa15.41■□□□□ 0.06
CCDC88C-205ENST00000553403 WFDC13Q8IUB5 93 aa15.41■□□□□ 0.06
CCDC88C-205ENST00000553403 ASB16-AS1Q495Z4 193 aa15.38■□□□□ 0.05
CCDC88C-205ENST00000553403 CASC2Q6XLA1 102 aa15.38■□□□□ 0.05
CCDC88C-205ENST00000553403 MMP24-AS1A0A0U1RRL7 71 aa15.35■□□□□ 0.05
CCDC88C-205ENST00000553403 CDK2AP2O75956 126 aa15.35■□□□□ 0.05
CCDC88C-205ENST00000553403 TMEM254Q8TBM7 123 aa15.35■□□□□ 0.05
CCDC88C-205ENST00000553403 PLA2G1BP04054 148 aaKnown RBP15.33■□□□□ 0.04
CCDC88C-205ENST00000553403 TMEM258P61165 79 aa15.33■□□□□ 0.04
CCDC88C-205ENST00000553403 VPS13BQ7Z7G8 4022 aa15.32■□□□□ 0.04
CCDC88C-205ENST00000553403 A0A1B0GVX0 72 aa15.32■□□□□ 0.04
CCDC88C-205ENST00000553403 SMR3BP02814 79 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-205ENST00000553403 Q5XG85 94 aa15.32■□□□□ 0.04
CCDC88C-205ENST00000553403 SNURFQ9Y675 71 aa15.32■□□□□ 0.04
CCDC88C-205ENST00000553403 KRTAP17-1Q9BYP8 105 aa15.29■□□□□ 0.04
CCDC88C-205ENST00000553403 A0A0U1RQV1 116 aa15.28■□□□□ 0.04
CCDC88C-205ENST00000553403 C8orf17Q9NRJ1 99 aa15.28■□□□□ 0.04
CCDC88C-205ENST00000553403 hDV103S1A0JD37 113 aa15.27■□□□□ 0.03
CCDC88C-205ENST00000553403 NDUFC1O43677 76 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms