RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 COX7BP24311 80 aa5.67□□□□□ -1.5
VPS13D-212ENST00000543766 ANK2Q01484 3957 aa5.67□□□□□ -1.5
VPS13D-212ENST00000543766 COL6A5A8TX70 2615 aa5.66□□□□□ -1.5
VPS13D-212ENST00000543766 LINC00959A0A1B0GUT2 108 aa5.66□□□□□ -1.5
VPS13D-212ENST00000543766 MAPK1IP1LQ8NDC0 245 aa5.66□□□□□ -1.5
VPS13D-212ENST00000543766 C5orf56Q8N8D9 126 aa5.66□□□□□ -1.5
VPS13D-212ENST00000543766 LCE6AA0A183 80 aa5.65□□□□□ -1.5
VPS13D-212ENST00000543766 SPANXA2-OT1Q8N9U9 137 aa5.65□□□□□ -1.5
VPS13D-212ENST00000543766 RHPN1-AS1Q9BWJ2 59 aa5.65□□□□□ -1.5
VPS13D-212ENST00000543766 ZNF469Q96JG9 3925 aaPredicted RBP5.65□□□□□ -1.51
VPS13D-212ENST00000543766 NF1P21359 2839 aa5.64□□□□□ -1.51
VPS13D-212ENST00000543766 UQCR11O14957 56 aa5.64□□□□□ -1.51
VPS13D-212ENST00000543766 DEFB105AQ8NG35 78 aa5.63□□□□□ -1.51
VPS13D-212ENST00000543766 SMR3AQ99954 134 aa5.63□□□□□ -1.51
VPS13D-212ENST00000543766 IGLV5-37A0A075B6J1 123 aa5.62□□□□□ -1.51
VPS13D-212ENST00000543766 H3BUA1 57 aa5.62□□□□□ -1.51
VPS13D-212ENST00000543766 TRGV1A0A0A0MS02 117 aa5.61□□□□□ -1.51
VPS13D-212ENST00000543766 Q8NBF4 154 aa5.61□□□□□ -1.51
VPS13D-212ENST00000543766 SPINK13Q1W4C9 94 aa5.6□□□□□ -1.51
VPS13D-212ENST00000543766 USMG5Q96IX5 58 aa5.6□□□□□ -1.51
VPS13D-212ENST00000543766 DMAC1Q96GE9 116 aa5.6□□□□□ -1.51
VPS13D-212ENST00000543766 IGLV10-54A0A075B6I4 117 aa5.6□□□□□ -1.51
VPS13D-212ENST00000543766 H3BQ85 93 aa5.59□□□□□ -1.51
VPS13D-212ENST00000543766 NUPR2A6NF83 97 aa5.58□□□□□ -1.52
VPS13D-212ENST00000543766 IGLV1-40P01703 118 aa5.58□□□□□ -1.52
VPS13D-212ENST00000543766 CNBPP62633 177 aaKnown RBP5.58□□□□□ -1.52
VPS13D-212ENST00000543766 C7orf33Q8WU49 177 aa5.58□□□□□ -1.52
VPS13D-212ENST00000543766 K7EQZ3 153 aa5.57□□□□□ -1.52
VPS13D-212ENST00000543766 IGLV1-50A0A075B6I6 118 aa5.57□□□□□ -1.52
VPS13D-212ENST00000543766 CCL19Q99731 98 aa5.57□□□□□ -1.52
VPS13D-212ENST00000543766 A0A087X002 238 aa5.57□□□□□ -1.52
VPS13D-212ENST00000543766 KPRPQ5T749 579 aaPredicted RBP5.57□□□□□ -1.52
VPS13D-212ENST00000543766 C9orf163Q8N9P6 203 aa5.56□□□□□ -1.52
VPS13D-212ENST00000543766 ZNF861PO60384 105 aa5.56□□□□□ -1.52
VPS13D-212ENST00000543766 KCNQ1DNQ9H478 68 aa5.55□□□□□ -1.52
VPS13D-212ENST00000543766 MXRA5Q9NR99 2828 aa5.55□□□□□ -1.52
VPS13D-212ENST00000543766 A0A1B0GVX0 72 aa5.54□□□□□ -1.52
VPS13D-212ENST00000543766 CMYA5Q8N3K9 4069 aa5.54□□□□□ -1.52
VPS13D-212ENST00000543766 NSD1Q96L73 2696 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-212ENST00000543766 SPATA8Q6RVD6 105 aa5.53□□□□□ -1.52
VPS13D-212ENST00000543766 LINC00304Q8N9R0 145 aa5.52□□□□□ -1.53
VPS13D-212ENST00000543766 DEFB114Q30KQ6 69 aa5.52□□□□□ -1.53
VPS13D-212ENST00000543766 C1orf137Q5JT78 98 aa5.52□□□□□ -1.53
VPS13D-212ENST00000543766 KRTAP21-3Q3LHN1 58 aa5.51□□□□□ -1.53
VPS13D-212ENST00000543766 IGLV7-46A0A075B6I9 117 aa5.51□□□□□ -1.53
VPS13D-212ENST00000543766 MGAM2Q2M2H8 2515 aa5.51□□□□□ -1.53
VPS13D-212ENST00000543766 ACYP2P14621 99 aa5.51□□□□□ -1.53
VPS13D-212ENST00000543766 ANK3Q12955 4377 aaKnown RBP5.51□□□□□ -1.53
VPS13D-212ENST00000543766 CAMK2N1Q7Z7J9 78 aa5.5□□□□□ -1.53
VPS13D-212ENST00000543766 Q8IZM0 81 aa5.5□□□□□ -1.53
VPS13D-212ENST00000543766 PRR34Q9NV39 138 aa5.5□□□□□ -1.53
VPS13D-212ENST00000543766 HRES1P13985 223 aa5.49□□□□□ -1.53
VPS13D-212ENST00000543766 SLURP1P55000 103 aa5.49□□□□□ -1.53
VPS13D-212ENST00000543766 COX17Q14061 63 aa5.49□□□□□ -1.53
VPS13D-212ENST00000543766 BRD3OSQ6XYD6 125 aa5.49□□□□□ -1.53
VPS13D-212ENST00000543766 H3BUX3 64 aa5.49□□□□□ -1.53
VPS13D-212ENST00000543766 IGLV6-57P01721 117 aa5.48□□□□□ -1.53
VPS13D-212ENST00000543766 KRTAP4-16G5E9R7 235 aaPredicted RBP5.48□□□□□ -1.53
VPS13D-212ENST00000543766 PLAC8Q9NZF1 115 aa5.48□□□□□ -1.53
VPS13D-212ENST00000543766 SPRR4Q96PI1 79 aa5.47□□□□□ -1.53
VPS13D-212ENST00000543766 KRTAP26-1Q6PEX3 210 aa5.47□□□□□ -1.53
VPS13D-212ENST00000543766 DNAH3Q8TD57 4116 aa5.46□□□□□ -1.53
VPS13D-212ENST00000543766 Q6YL49 198 aa5.46□□□□□ -1.53
VPS13D-212ENST00000543766 FBN1P35555 2871 aaKnown RBP5.46□□□□□ -1.54
VPS13D-212ENST00000543766 DMBT1Q9UGM3 2413 aaPredicted RBP5.45□□□□□ -1.54
VPS13D-212ENST00000543766 LY6EQ16553 131 aa5.45□□□□□ -1.54
VPS13D-212ENST00000543766 Q5W150 140 aa5.44□□□□□ -1.54
VPS13D-212ENST00000543766 C16orf74Q96GX8 76 aa5.44□□□□□ -1.54
VPS13D-212ENST00000543766 LCE2BO14633 110 aa5.43□□□□□ -1.54
VPS13D-212ENST00000543766 NOTCH1P46531 2555 aa5.43□□□□□ -1.54
VPS13D-212ENST00000543766 IGKV2D-24A0A075B6R9 120 aa5.42□□□□□ -1.54
VPS13D-212ENST00000543766 LCE2CQ5TA81 110 aa5.42□□□□□ -1.54
VPS13D-212ENST00000543766 LINC00472Q9H8W2 130 aa5.42□□□□□ -1.54
VPS13D-212ENST00000543766 DEFB131AP59861 70 aa5.41□□□□□ -1.54
VPS13D-212ENST00000543766 RPL37AP61513 92 aaKnown RBP5.41□□□□□ -1.54
VPS13D-212ENST00000543766 DSCR10P59022 87 aa5.41□□□□□ -1.54
VPS13D-212ENST00000543766 KRTAP1-3Q8IUG1 177 aa5.41□□□□□ -1.54
VPS13D-212ENST00000543766 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.41□□□□□ -1.54
VPS13D-212ENST00000543766 TENM1Q9UKZ4 2725 aa5.41□□□□□ -1.54
VPS13D-212ENST00000543766 NBEAL2Q6ZNJ1 2754 aa5.39□□□□□ -1.55
VPS13D-212ENST00000543766 A0A087WTM6 91 aa5.38□□□□□ -1.55
VPS13D-212ENST00000543766 A0A1B0GUV1 79 aa5.38□□□□□ -1.55
VPS13D-212ENST00000543766 C6orf48Q9UBA6 75 aa5.38□□□□□ -1.55
VPS13D-212ENST00000543766 DNHD1Q96M86 4753 aa5.38□□□□□ -1.55
VPS13D-212ENST00000543766 Q96NJ1 140 aa5.38□□□□□ -1.55
VPS13D-212ENST00000543766 C10orf99Q6UWK7 81 aa5.38□□□□□ -1.55
VPS13D-212ENST00000543766 CLPSL2Q6UWE3 100 aa5.37□□□□□ -1.55
VPS13D-212ENST00000543766 C4orf3Q8WVX3 66 aa5.36□□□□□ -1.55
VPS13D-212ENST00000543766 IGLV5-48A0A075B6I7 105 aa5.36□□□□□ -1.55
VPS13D-212ENST00000543766 NBDYA0A0U1RRE5 68 aa5.35□□□□□ -1.55
VPS13D-212ENST00000543766 A0A087WSZ3 146 aa5.35□□□□□ -1.55
VPS13D-212ENST00000543766 A0A1W2PNN7 141 aa5.34□□□□□ -1.55
VPS13D-212ENST00000543766 GVQW2A0A096LPI5 108 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-212ENST00000543766 FAM168BA1KXE4 195 aa5.33□□□□□ -1.56
VPS13D-212ENST00000543766 PKD1L1Q8TDX9 2849 aa5.33□□□□□ -1.56
VPS13D-212ENST00000543766 ANGP03950 147 aaKnown RBP5.33□□□□□ -1.56
VPS13D-212ENST00000543766 GIG44P09565 113 aaPredicted RBP5.32□□□□□ -1.56
VPS13D-212ENST00000543766 TGP01266 2768 aa5.32□□□□□ -1.56
VPS13D-212ENST00000543766 PANO1I0J062 215 aa5.31□□□□□ -1.56
VPS13D-212ENST00000543766 TRRAPQ9Y4A5 3859 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms