RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 PLA2G2DQ9UNK4 145 aa8□□□□□ -1.13
SFSWAP-208ENST00000539506 CD164Q04900 197 aa8□□□□□ -1.13
SFSWAP-208ENST00000539506 IGKV2-24A0A0C4DH68 120 aa8□□□□□ -1.13
SFSWAP-208ENST00000539506 Q6ZRX8 168 aa8□□□□□ -1.13
SFSWAP-208ENST00000539506 PRLHP81277 87 aa7.99□□□□□ -1.13
SFSWAP-208ENST00000539506 KRTAP1-5Q9BYS1 174 aa7.99□□□□□ -1.13
SFSWAP-208ENST00000539506 SPRR1AP35321 89 aa7.98□□□□□ -1.13
SFSWAP-208ENST00000539506 PMAIP1Q13794 54 aa7.98□□□□□ -1.13
SFSWAP-208ENST00000539506 IGLV5-37A0A075B6J1 123 aa7.98□□□□□ -1.13
SFSWAP-208ENST00000539506 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.98□□□□□ -1.13
SFSWAP-208ENST00000539506 IGLV5-48A0A075B6I7 105 aa7.98□□□□□ -1.13
SFSWAP-208ENST00000539506 A8MU10 97 aa7.97□□□□□ -1.13
SFSWAP-208ENST00000539506 Q8NBF4 154 aa7.96□□□□□ -1.14
SFSWAP-208ENST00000539506 ATP5EP56381 51 aaPredicted RBP7.96□□□□□ -1.14
SFSWAP-208ENST00000539506 A0A087WSZ3 146 aa7.95□□□□□ -1.14
SFSWAP-208ENST00000539506 MRPL55Q7Z7F7 128 aaKnown RBP7.95□□□□□ -1.14
SFSWAP-208ENST00000539506 DYNC2H1Q8NCM8 4307 aaKnown RBP7.94□□□□□ -1.14
SFSWAP-208ENST00000539506 PSCAO43653 123 aa7.94□□□□□ -1.14
SFSWAP-208ENST00000539506 LINC00476Q8WZB0 136 aa7.94□□□□□ -1.14
SFSWAP-208ENST00000539506 PLECQ15149 4684 aaKnown RBP7.94□□□□□ -1.14
SFSWAP-208ENST00000539506 hDV103S1A0JD37 113 aa7.94□□□□□ -1.14
SFSWAP-208ENST00000539506 TNP2Q05952 138 aa7.94□□□□□ -1.14
SFSWAP-208ENST00000539506 DHRS4-AS1Q9P1J3 65 aa7.94□□□□□ -1.14
SFSWAP-208ENST00000539506 LINC00208Q96KT6 92 aa7.92□□□□□ -1.14
SFSWAP-208ENST00000539506 HCG22E2RYF7 251 aa7.91□□□□□ -1.14
SFSWAP-208ENST00000539506 H3BS24 57 aa7.9□□□□□ -1.14
SFSWAP-208ENST00000539506 IGFL1Q6UW32 110 aa7.9□□□□□ -1.14
SFSWAP-208ENST00000539506 A8MUN3 132 aa7.89□□□□□ -1.15
SFSWAP-208ENST00000539506 REG3GQ6UW15 175 aa7.88□□□□□ -1.15
SFSWAP-208ENST00000539506 TRAV22A0A0B4J277 110 aa7.87□□□□□ -1.15
SFSWAP-208ENST00000539506 KRTAP11-1Q8IUC1 163 aa7.87□□□□□ -1.15
SFSWAP-208ENST00000539506 CHTF8P0CG12 524 aa7.86□□□□□ -1.15
SFSWAP-208ENST00000539506 SPRR4Q96PI1 79 aa7.85□□□□□ -1.15
SFSWAP-208ENST00000539506 ZCCHC13Q8WW36 166 aaKnown RBP7.85□□□□□ -1.15
SFSWAP-208ENST00000539506 C16orf90A8MZG2 172 aa7.84□□□□□ -1.15
SFSWAP-208ENST00000539506 CNBPP62633 177 aaKnown RBP7.84□□□□□ -1.15
SFSWAP-208ENST00000539506 APLNQ9ULZ1 77 aa7.84□□□□□ -1.15
SFSWAP-208ENST00000539506 STARD9Q9P2P6 4700 aa7.84□□□□□ -1.16
SFSWAP-208ENST00000539506 UBE2AP49459 152 aa7.82□□□□□ -1.16
SFSWAP-208ENST00000539506 MP68P56378 58 aa7.81□□□□□ -1.16
SFSWAP-208ENST00000539506 PHF5AQ7RTV0 110 aaKnown RBP7.81□□□□□ -1.16
SFSWAP-208ENST00000539506 LCE6AA0A183 80 aa7.8□□□□□ -1.16
SFSWAP-208ENST00000539506 H0Y9J4 135 aa7.8□□□□□ -1.16
SFSWAP-208ENST00000539506 H0Y9P7 68 aa7.8□□□□□ -1.16
SFSWAP-208ENST00000539506 PCOTHQ58A44 107 aa7.79□□□□□ -1.16
SFSWAP-208ENST00000539506 PRKDCP78527 4128 aaKnown RBP7.79□□□□□ -1.16
SFSWAP-208ENST00000539506 UBE2DNLQ8IWF7 75 aa7.79□□□□□ -1.16
SFSWAP-208ENST00000539506 CASC2Q6XLA1 102 aa7.78□□□□□ -1.16
SFSWAP-208ENST00000539506 A0A1B0GW54 56 aa7.78□□□□□ -1.16
SFSWAP-208ENST00000539506 MDFIQ99750 246 aa7.78□□□□□ -1.16
SFSWAP-208ENST00000539506 PANO1I0J062 215 aa7.78□□□□□ -1.16
SFSWAP-208ENST00000539506 B9D2Q9BPU9 175 aa7.78□□□□□ -1.16
SFSWAP-208ENST00000539506 J3QL48 77 aa7.77□□□□□ -1.17
SFSWAP-208ENST00000539506 Q1T7F1 81 aa7.77□□□□□ -1.17
SFSWAP-208ENST00000539506 LCE2DQ5TA82 110 aaPredicted RBP7.77□□□□□ -1.17
SFSWAP-208ENST00000539506 SPTSSBQ8NFR3 76 aa7.77□□□□□ -1.17
SFSWAP-208ENST00000539506 CHKB-CPT1BH3BT56 60 aa7.76□□□□□ -1.17
SFSWAP-208ENST00000539506 VPS13DQ5THJ4 4388 aa7.76□□□□□ -1.17
SFSWAP-208ENST00000539506 KMT2AQ03164 3969 aa7.76□□□□□ -1.17
SFSWAP-208ENST00000539506 HECTD4Q9Y4D8 3996 aa7.76□□□□□ -1.17
SFSWAP-208ENST00000539506 PRR15Q8IV56 129 aa7.75□□□□□ -1.17
SFSWAP-208ENST00000539506 PRR15LQ9BU68 103 aa7.75□□□□□ -1.17
SFSWAP-208ENST00000539506 FRAS1Q86XX4 4008 aa7.74□□□□□ -1.17
SFSWAP-208ENST00000539506 DNAH2Q9P225 4427 aa7.74□□□□□ -1.17
SFSWAP-208ENST00000539506 RBM12B-AS1Q9P1G2 102 aa7.74□□□□□ -1.17
SFSWAP-208ENST00000539506 IGLV8-61A0A075B6I0 122 aa7.73□□□□□ -1.17
SFSWAP-208ENST00000539506 Q6ZRN7 208 aaPredicted RBP7.73□□□□□ -1.17
SFSWAP-208ENST00000539506 C9orf163Q8N9P6 203 aa7.73□□□□□ -1.17
SFSWAP-208ENST00000539506 IGLV9-49A0A0B4J1Y8 123 aa7.72□□□□□ -1.17
SFSWAP-208ENST00000539506 Q5VV11 94 aa7.72□□□□□ -1.17
SFSWAP-208ENST00000539506 KRTAP21-3Q3LHN1 58 aa7.72□□□□□ -1.17
SFSWAP-208ENST00000539506 NBDYA0A0U1RRE5 68 aa7.71□□□□□ -1.18
SFSWAP-208ENST00000539506 CYP4F30PQ9H0H9 118 aa7.7□□□□□ -1.18
SFSWAP-208ENST00000539506 KRTAP29-1A8MX34 341 aaPredicted RBP7.7□□□□□ -1.18
SFSWAP-208ENST00000539506 NDUFS5O43920 106 aa7.69□□□□□ -1.18
SFSWAP-208ENST00000539506 KRTAP3-3Q9BYR6 98 aa7.69□□□□□ -1.18
SFSWAP-208ENST00000539506 KRTAP3-2Q9BYR7 98 aa7.69□□□□□ -1.18
SFSWAP-208ENST00000539506 C14orf177Q52M58 125 aa7.69□□□□□ -1.18
SFSWAP-208ENST00000539506 ANAPC11Q9NYG5 84 aa7.69□□□□□ -1.18
SFSWAP-208ENST00000539506 PRR26Q8N8Z3 221 aa7.69□□□□□ -1.18
SFSWAP-208ENST00000539506 NDUFB1O75438 58 aa7.68□□□□□ -1.18
SFSWAP-208ENST00000539506 MEGF8Q7Z7M0 2845 aa7.68□□□□□ -1.18
SFSWAP-208ENST00000539506 Q8N9P0 234 aaPredicted RBP7.68□□□□□ -1.18
SFSWAP-208ENST00000539506 FBN3Q75N90 2809 aa7.67□□□□□ -1.18
SFSWAP-208ENST00000539506 SPAG11AQ6PDA7 123 aa7.67□□□□□ -1.18
SFSWAP-208ENST00000539506 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.67□□□□□ -1.18
SFSWAP-208ENST00000539506 SPRR1BP22528 89 aa7.66□□□□□ -1.18
SFSWAP-208ENST00000539506 DNAH8Q96JB1 4490 aa7.66□□□□□ -1.18
SFSWAP-208ENST00000539506 KRTAP13-1Q8IUC0 172 aa7.66□□□□□ -1.18
SFSWAP-208ENST00000539506 A6NED7 52 aa7.65□□□□□ -1.18
SFSWAP-208ENST00000539506 DNHD1Q96M86 4753 aa7.65□□□□□ -1.18
SFSWAP-208ENST00000539506 A8MWP4 228 aa7.65□□□□□ -1.19
SFSWAP-208ENST00000539506 LINC00472Q9H8W2 130 aa7.65□□□□□ -1.19
SFSWAP-208ENST00000539506 COA5Q86WW8 74 aa7.64□□□□□ -1.19
SFSWAP-208ENST00000539506 DNAH17Q9UFH2 4485 aa7.63□□□□□ -1.19
SFSWAP-208ENST00000539506 IGHV6-1A0A0B4J1U7 121 aa7.63□□□□□ -1.19
SFSWAP-208ENST00000539506 LCA10Q71F78 164 aa7.62□□□□□ -1.19
SFSWAP-208ENST00000539506 NUPR2A6NF83 97 aa7.61□□□□□ -1.19
SFSWAP-208ENST00000539506 C8orf87E5RJ46 101 aa7.61□□□□□ -1.19
SFSWAP-208ENST00000539506 SPACA4Q8TDM5 124 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms