RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 SCGB1D4Q6XE38 83 aa4.52□□□□□ -1.69
USP28-203ENST00000537490 MUSTN1Q8IVN3 82 aa4.52□□□□□ -1.69
USP28-203ENST00000537490 CFC1BP0CG36 223 aa4.51□□□□□ -1.69
USP28-203ENST00000537490 IFITM1P13164 125 aa4.51□□□□□ -1.69
USP28-203ENST00000537490 KRTAP10-6P60371 365 aaPredicted RBP4.51□□□□□ -1.69
USP28-203ENST00000537490 RPL37P61927 97 aaKnown RBP4.51□□□□□ -1.69
USP28-203ENST00000537490 COA6Q5JTJ3 125 aaKnown RBP4.5□□□□□ -1.69
USP28-203ENST00000537490 PCP2Q8IVA1 136 aa4.5□□□□□ -1.69
USP28-203ENST00000537490 ATOH7Q8N100 152 aa4.5□□□□□ -1.69
USP28-203ENST00000537490 Q6ZVH6 145 aa4.49□□□□□ -1.69
USP28-203ENST00000537490 SMIM11BQ8TCY0 68 aa4.49□□□□□ -1.69
USP28-203ENST00000537490 COPS9Q8WXC6 57 aa4.49□□□□□ -1.69
USP28-203ENST00000537490 A4D1N5 150 aa4.48□□□□□ -1.69
USP28-203ENST00000537490 FSIP2Q5CZC0 6907 aa4.47□□□□□ -1.69
USP28-203ENST00000537490 TRAV13-2A0A0B4J235 113 aa4.47□□□□□ -1.69
USP28-203ENST00000537490 C20orf202A1L168 122 aa4.47□□□□□ -1.69
USP28-203ENST00000537490 NHP2Q9NX24 153 aaKnown RBP4.47□□□□□ -1.69
USP28-203ENST00000537490 M0R2T5 61 aa4.46□□□□□ -1.7
USP28-203ENST00000537490 TCL1BO95988 128 aa4.46□□□□□ -1.7
USP28-203ENST00000537490 COX6B2Q6YFQ2 88 aa4.46□□□□□ -1.7
USP28-203ENST00000537490 KRTAP4-2Q9BYR5 136 aa4.46□□□□□ -1.7
USP28-203ENST00000537490 LINC00575Q6W349 94 aa4.45□□□□□ -1.7
USP28-203ENST00000537490 F8WEM9 126 aa4.44□□□□□ -1.7
USP28-203ENST00000537490 hADV29S1A0JD25 119 aa4.43□□□□□ -1.7
USP28-203ENST00000537490 VAMP3Q15836 100 aa4.43□□□□□ -1.7
USP28-203ENST00000537490 IGFL1Q6UW32 110 aa4.43□□□□□ -1.7
USP28-203ENST00000537490 Q6ZQY7 126 aa4.43□□□□□ -1.7
USP28-203ENST00000537490 TRBV7-7A0A0K0K1E9 115 aa4.42□□□□□ -1.7
USP28-203ENST00000537490 OCIAD2Q56VL3 154 aa4.42□□□□□ -1.7
USP28-203ENST00000537490 Q6JHZ5 121 aa4.42□□□□□ -1.7
USP28-203ENST00000537490 SNRPEP62304 92 aaKnown RBP4.41□□□□□ -1.7
USP28-203ENST00000537490 CLEC2BQ92478 149 aa4.41□□□□□ -1.7
USP28-203ENST00000537490 OBSCN-AS1Q96MR7 158 aa4.4□□□□□ -1.71
USP28-203ENST00000537490 Q6Q795 121 aa4.39□□□□□ -1.71
USP28-203ENST00000537490 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.39□□□□□ -1.71
USP28-203ENST00000537490 ATP11AUNQ6ZP68 121 aa4.39□□□□□ -1.71
USP28-203ENST00000537490 Q75L30 129 aa4.39□□□□□ -1.71
USP28-203ENST00000537490 H3BUT2 72 aa4.38□□□□□ -1.71
USP28-203ENST00000537490 HIST3H2BBQ8N257 126 aa4.38□□□□□ -1.71
USP28-203ENST00000537490 C12orf57Q99622 126 aa4.38□□□□□ -1.71
USP28-203ENST00000537490 FLGP20930 4061 aaPredicted RBP4.38□□□□□ -1.71
USP28-203ENST00000537490 KRTAP19-4Q3LI73 84 aa4.37□□□□□ -1.71
USP28-203ENST00000537490 HIST1H2BLQ99880 126 aa4.37□□□□□ -1.71
USP28-203ENST00000537490 SNHG12Q9BXW3 62 aa4.37□□□□□ -1.71
USP28-203ENST00000537490 HSBP1L1C9JCN9 74 aa4.36□□□□□ -1.71
USP28-203ENST00000537490 LST1O00453 97 aa4.36□□□□□ -1.71
USP28-203ENST00000537490 PPDPFLQ8WWR9 84 aa4.36□□□□□ -1.71
USP28-203ENST00000537490 Q96NJ1 140 aa4.36□□□□□ -1.71
USP28-203ENST00000537490 S100A2P29034 98 aa4.35□□□□□ -1.71
USP28-203ENST00000537490 BVES-AS1Q5T3Y7 98 aa4.35□□□□□ -1.71
USP28-203ENST00000537490 SCGB1D1O95968 90 aa4.34□□□□□ -1.71
USP28-203ENST00000537490 HIST1H4GQ99525 98 aa4.34□□□□□ -1.71
USP28-203ENST00000537490 KRTAP4-11Q9BYQ6 195 aa4.34□□□□□ -1.71
USP28-203ENST00000537490 C20orf166-AS1Q96NR2 134 aa4.33□□□□□ -1.72
USP28-203ENST00000537490 A8MUU9 505 aa4.32□□□□□ -1.72
USP28-203ENST00000537490 CFC1P0CG37 223 aa4.32□□□□□ -1.72
USP28-203ENST00000537490 COX8AP10176 69 aa4.32□□□□□ -1.72
USP28-203ENST00000537490 LCE4AQ5TA78 99 aa4.32□□□□□ -1.72
USP28-203ENST00000537490 FAM218AQ96MZ4 157 aa4.32□□□□□ -1.72
USP28-203ENST00000537490 KRTAP9-8Q9BYQ0 159 aa4.32□□□□□ -1.72
USP28-203ENST00000537490 A0A087WSZ3 146 aa4.31□□□□□ -1.72
USP28-203ENST00000537490 NDUFV3P56181 108 aaKnown RBP4.31□□□□□ -1.72
USP28-203ENST00000537490 TEN1Q86WV5 123 aa4.31□□□□□ -1.72
USP28-203ENST00000537490 SS18L2Q9UHA2 77 aa4.31□□□□□ -1.72
USP28-203ENST00000537490 H0YGX0 51 aa4.29□□□□□ -1.72
USP28-203ENST00000537490 DLEU1O43261 78 aa4.29□□□□□ -1.72
USP28-203ENST00000537490 DSCR10P59022 87 aa4.29□□□□□ -1.72
USP28-203ENST00000537490 RAB37Q96AX2 223 aa4.29□□□□□ -1.72
USP28-203ENST00000537490 TRBV20-1A0A075B6N2 111 aa4.28□□□□□ -1.72
USP28-203ENST00000537490 KRTAP16-1A8MUX0 517 aa4.28□□□□□ -1.72
USP28-203ENST00000537490 H3BMG7 143 aa4.28□□□□□ -1.72
USP28-203ENST00000537490 SNCGO76070 127 aa4.28□□□□□ -1.72
USP28-203ENST00000537490 S100A6P06703 90 aa4.28□□□□□ -1.72
USP28-203ENST00000537490 C14orf144Q96I85 54 aa4.28□□□□□ -1.72
USP28-203ENST00000537490 A0A0B4J2C4 111 aa4.27□□□□□ -1.73
USP28-203ENST00000537490 A0A1W2PNM2 257 aa4.27□□□□□ -1.73
USP28-203ENST00000537490 FABP2P12104 132 aa4.26□□□□□ -1.73
USP28-203ENST00000537490 HIGD1BQ9P298 99 aa4.26□□□□□ -1.73
USP28-203ENST00000537490 A0A1B0GX51 115 aa4.25□□□□□ -1.73
USP28-203ENST00000537490 C2orf91Q6ZV80 131 aa4.25□□□□□ -1.73
USP28-203ENST00000537490 SIGMAR1Q99720 223 aa4.25□□□□□ -1.73
USP28-203ENST00000537490 KRTAP9-7A8MTY7 169 aa4.24□□□□□ -1.73
USP28-203ENST00000537490 MT2AP02795 61 aa4.24□□□□□ -1.73
USP28-203ENST00000537490 LINC00313P59037 77 aa4.24□□□□□ -1.73
USP28-203ENST00000537490 SPATA45Q537H7 98 aa4.24□□□□□ -1.73
USP28-203ENST00000537490 NOTCH2NLQ7Z3S9 236 aa4.24□□□□□ -1.73
USP28-203ENST00000537490 PRO1854Q9UHT4 67 aa4.24□□□□□ -1.73
USP28-203ENST00000537490 PAM16Q9Y3D7 125 aa4.24□□□□□ -1.73
USP28-203ENST00000537490 IGKV4-1P06312 121 aa4.23□□□□□ -1.73
USP28-203ENST00000537490 CEND1Q8N111 149 aa4.23□□□□□ -1.73
USP28-203ENST00000537490 FAM236DA0A1B0GTK5 79 aa4.22□□□□□ -1.73
USP28-203ENST00000537490 TRIAP1O43715 76 aa4.22□□□□□ -1.73
USP28-203ENST00000537490 FAM236CP0DP71 79 aa4.22□□□□□ -1.73
USP28-203ENST00000537490 HRES1P13985 223 aa4.22□□□□□ -1.73
USP28-203ENST00000537490 FXYD2P54710 66 aa4.22□□□□□ -1.73
USP28-203ENST00000537490 DEFB116Q30KQ4 102 aa4.22□□□□□ -1.73
USP28-203ENST00000537490 ANKRD29Q8N6D5 301 aa4.22□□□□□ -1.73
USP28-203ENST00000537490 MPLKIPQ8TAP9 179 aa4.22□□□□□ -1.73
USP28-203ENST00000537490 TRBV7-4A0A0J9YYF1 115 aa4.21□□□□□ -1.74
USP28-203ENST00000537490 A0A1B0GV72 72 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms