RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 MRPL55Q7Z7F7 128 aaKnown RBP7.53□□□□□ -1.2
CLIP1-208ENST00000537004 IGKV2-24A0A0C4DH68 120 aa7.52□□□□□ -1.21
CLIP1-208ENST00000537004 H3BQ85 93 aa7.52□□□□□ -1.21
CLIP1-208ENST00000537004 PRYO14603 147 aa7.52□□□□□ -1.21
CLIP1-208ENST00000537004 SERP2Q8N6R1 65 aa7.52□□□□□ -1.21
CLIP1-208ENST00000537004 CIRBP-AS1Q8TBR5 109 aa7.52□□□□□ -1.21
CLIP1-208ENST00000537004 PANO1I0J062 215 aa7.51□□□□□ -1.21
CLIP1-208ENST00000537004 C9orf163Q8N9P6 203 aa7.51□□□□□ -1.21
CLIP1-208ENST00000537004 FAM229AH3BQW9 127 aa7.51□□□□□ -1.21
CLIP1-208ENST00000537004 DPH3Q96FX2 82 aa7.51□□□□□ -1.21
CLIP1-208ENST00000537004 LAMTOR3Q9UHA4 124 aa7.51□□□□□ -1.21
CLIP1-208ENST00000537004 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.5□□□□□ -1.21
CLIP1-208ENST00000537004 KRTAP4-16G5E9R7 235 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-208ENST00000537004 GHRHP01286 108 aa7.49□□□□□ -1.21
CLIP1-208ENST00000537004 SPRR1AP35321 89 aa7.49□□□□□ -1.21
CLIP1-208ENST00000537004 Q6ZRX8 168 aa7.49□□□□□ -1.21
CLIP1-208ENST00000537004 ETDCA0A1B0GVM5 59 aa7.48□□□□□ -1.21
CLIP1-208ENST00000537004 CCKP06307 115 aa7.48□□□□□ -1.21
CLIP1-208ENST00000537004 RBM3P98179 157 aaKnown RBP7.48□□□□□ -1.21
CLIP1-208ENST00000537004 DMBT1Q9UGM3 2413 aaPredicted RBP7.47□□□□□ -1.21
CLIP1-208ENST00000537004 A0A1W2PNN7 141 aa7.47□□□□□ -1.21
CLIP1-208ENST00000537004 CHTF8P0CG12 524 aa7.47□□□□□ -1.21
CLIP1-208ENST00000537004 CYSTM1Q9H1C7 97 aa7.47□□□□□ -1.21
CLIP1-208ENST00000537004 LINC00846Q9NV44 126 aa7.46□□□□□ -1.22
CLIP1-208ENST00000537004 DHRS4-AS1Q9P1J3 65 aa7.46□□□□□ -1.22
CLIP1-208ENST00000537004 PKIGQ9Y2B9 76 aa7.46□□□□□ -1.22
CLIP1-208ENST00000537004 REG3GQ6UW15 175 aa7.45□□□□□ -1.22
CLIP1-208ENST00000537004 Q9BRP9 147 aa7.45□□□□□ -1.22
CLIP1-208ENST00000537004 IGKV3D-7A0A0C4DH55 119 aa7.45□□□□□ -1.22
CLIP1-208ENST00000537004 LRP1Q07954 4544 aaKnown RBP7.45□□□□□ -1.22
CLIP1-208ENST00000537004 LOC110117498A0A087WWA1 95 aa7.44□□□□□ -1.22
CLIP1-208ENST00000537004 Q6ZQT0 140 aa7.44□□□□□ -1.22
CLIP1-208ENST00000537004 DSCR8Q96T75 97 aa7.44□□□□□ -1.22
CLIP1-208ENST00000537004 PLA2G1BP04054 148 aaKnown RBP7.42□□□□□ -1.22
CLIP1-208ENST00000537004 KRTAP10-4P60372 401 aaPredicted RBP7.42□□□□□ -1.22
CLIP1-208ENST00000537004 ATP5EP2Q5VTU8 51 aa7.42□□□□□ -1.22
CLIP1-208ENST00000537004 DEFB105AQ8NG35 78 aa7.42□□□□□ -1.22
CLIP1-208ENST00000537004 LINC00474Q9P2X8 69 aa7.42□□□□□ -1.22
CLIP1-208ENST00000537004 A0A087WVE0 104 aa7.41□□□□□ -1.22
CLIP1-208ENST00000537004 PDE6GP18545 87 aa7.41□□□□□ -1.22
CLIP1-208ENST00000537004 UBE2BP63146 152 aa7.41□□□□□ -1.22
CLIP1-208ENST00000537004 TRBV7-4A0A0J9YYF1 115 aa7.4□□□□□ -1.22
CLIP1-208ENST00000537004 OXTP01178 125 aa7.4□□□□□ -1.22
CLIP1-208ENST00000537004 LINC01547P58512 204 aaPredicted RBP7.4□□□□□ -1.22
CLIP1-208ENST00000537004 PHF5AQ7RTV0 110 aaKnown RBP7.4□□□□□ -1.22
CLIP1-208ENST00000537004 Q8N377 158 aa7.4□□□□□ -1.22
CLIP1-208ENST00000537004 SPACA4Q8TDM5 124 aa7.4□□□□□ -1.22
CLIP1-208ENST00000537004 Q5XG85 94 aa7.4□□□□□ -1.23
CLIP1-208ENST00000537004 ERC2-IT1O76042 136 aa7.39□□□□□ -1.23
CLIP1-208ENST00000537004 ST20-AS1Q8NBB2 130 aa7.39□□□□□ -1.23
CLIP1-208ENST00000537004 IGLV5-48A0A075B6I7 105 aa7.38□□□□□ -1.23
CLIP1-208ENST00000537004 FAM19A1Q7Z5A9 133 aa7.38□□□□□ -1.23
CLIP1-208ENST00000537004 KRTAP11-1Q8IUC1 163 aa7.38□□□□□ -1.23
CLIP1-208ENST00000537004 PRLHP81277 87 aa7.37□□□□□ -1.23
CLIP1-208ENST00000537004 C4orf26Q17RF5 130 aa7.37□□□□□ -1.23
CLIP1-208ENST00000537004 BCE1O60756 84 aa7.37□□□□□ -1.23
CLIP1-208ENST00000537004 RPL37AP61513 92 aaKnown RBP7.37□□□□□ -1.23
CLIP1-208ENST00000537004 UBL5Q9BZL1 73 aa7.35□□□□□ -1.23
CLIP1-208ENST00000537004 PLAC8Q9NZF1 115 aa7.35□□□□□ -1.23
CLIP1-208ENST00000537004 FAT3Q8TDW7 4589 aa7.35□□□□□ -1.23
CLIP1-208ENST00000537004 HRCT1Q6UXD1 115 aa7.35□□□□□ -1.23
CLIP1-208ENST00000537004 HIGD2AQ9BW72 106 aa7.34□□□□□ -1.24
CLIP1-208ENST00000537004 H0Y9J4 135 aa7.32□□□□□ -1.24
CLIP1-208ENST00000537004 FAM236DA0A1B0GTK5 79 aa7.32□□□□□ -1.24
CLIP1-208ENST00000537004 FAM236CP0DP71 79 aa7.32□□□□□ -1.24
CLIP1-208ENST00000537004 SERP1Q9Y6X1 66 aa7.32□□□□□ -1.24
CLIP1-208ENST00000537004 PKHD1L1Q86WI1 4243 aa7.3□□□□□ -1.24
CLIP1-208ENST00000537004 J3QL48 77 aa7.3□□□□□ -1.24
CLIP1-208ENST00000537004 Q6ZVQ6 151 aa7.3□□□□□ -1.24
CLIP1-208ENST00000537004 TRAV7A0A075B6U4 112 aa7.3□□□□□ -1.24
CLIP1-208ENST00000537004 UBE2AP49459 152 aa7.3□□□□□ -1.24
CLIP1-208ENST00000537004 C20orf197Q8N268 126 aa7.3□□□□□ -1.24
CLIP1-208ENST00000537004 SMIM29Q86T20 159 aa7.29□□□□□ -1.24
CLIP1-208ENST00000537004 KRTAP29-1A8MX34 341 aaPredicted RBP7.28□□□□□ -1.24
CLIP1-208ENST00000537004 C1orf137Q5JT78 98 aa7.28□□□□□ -1.24
CLIP1-208ENST00000537004 H7BZZ5 65 aa7.27□□□□□ -1.25
CLIP1-208ENST00000537004 KLKP1Q107X0 134 aa7.27□□□□□ -1.25
CLIP1-208ENST00000537004 PRO0628Q9UI54 55 aa7.27□□□□□ -1.25
CLIP1-208ENST00000537004 F8WEM9 126 aa7.27□□□□□ -1.25
CLIP1-208ENST00000537004 KRTAP13-1Q8IUC0 172 aa7.27□□□□□ -1.25
CLIP1-208ENST00000537004 A0A1W2PNM2 257 aa7.25□□□□□ -1.25
CLIP1-208ENST00000537004 Q8NBF4 154 aa7.24□□□□□ -1.25
CLIP1-208ENST00000537004 SMIM26A0A096LP01 95 aa7.23□□□□□ -1.25
CLIP1-208ENST00000537004 SPRR1BP22528 89 aa7.23□□□□□ -1.25
CLIP1-208ENST00000537004 CXCL6P80162 114 aa7.23□□□□□ -1.25
CLIP1-208ENST00000537004 A0A1B0GW54 56 aa7.23□□□□□ -1.25
CLIP1-208ENST00000537004 IGLV8-61A0A075B6I0 122 aa7.22□□□□□ -1.25
CLIP1-208ENST00000537004 NDUFC1O43677 76 aa7.22□□□□□ -1.25
CLIP1-208ENST00000537004 PSORS1C2Q9UIG4 136 aa7.22□□□□□ -1.25
CLIP1-208ENST00000537004 NREPQ16612 68 aa7.22□□□□□ -1.25
CLIP1-208ENST00000537004 IGFL1Q6UW32 110 aa7.22□□□□□ -1.25
CLIP1-208ENST00000537004 SPRR4Q96PI1 79 aa7.22□□□□□ -1.25
CLIP1-208ENST00000537004 ATP5EP56381 51 aaPredicted RBP7.21□□□□□ -1.26
CLIP1-208ENST00000537004 A0A0G2JQZ4 141 aa7.2□□□□□ -1.26
CLIP1-208ENST00000537004 MT1HL1P0DM35 61 aa7.19□□□□□ -1.26
CLIP1-208ENST00000537004 TNXBP22105 4242 aa7.19□□□□□ -1.26
CLIP1-208ENST00000537004 HMCN2Q8NDA2 5059 aa7.18□□□□□ -1.26
CLIP1-208ENST00000537004 FP248Q71RG6 208 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-208ENST00000537004 BPY2O14599 106 aa7.16□□□□□ -1.26
CLIP1-208ENST00000537004 SNURFQ9Y675 71 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms