RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 LINC01558Q9Y6Z2 57 aa8.97□□□□□ -0.97
PCF11-204ENST00000530660 BAHCC1Q9P281 2608 aa8.97□□□□□ -0.97
PCF11-204ENST00000530660 VWFP04275 2813 aa8.97□□□□□ -0.97
PCF11-204ENST00000530660 FAM168BA1KXE4 195 aa8.96□□□□□ -0.97
PCF11-204ENST00000530660 MDFIQ99750 246 aa8.96□□□□□ -0.97
PCF11-204ENST00000530660 KRTAP4-16G5E9R7 235 aaPredicted RBP8.95□□□□□ -0.98
PCF11-204ENST00000530660 IGFL1Q6UW32 110 aa8.95□□□□□ -0.98
PCF11-204ENST00000530660 NOTCH2Q04721 2471 aa8.95□□□□□ -0.98
PCF11-204ENST00000530660 IGLV7-46A0A075B6I9 117 aa8.95□□□□□ -0.98
PCF11-204ENST00000530660 H3BPC8 53 aa8.95□□□□□ -0.98
PCF11-204ENST00000530660 SRRM2Q9UQ35 2752 aaKnown RBP8.95□□□□□ -0.98
PCF11-204ENST00000530660 PLAC8Q9NZF1 115 aa8.95□□□□□ -0.98
PCF11-204ENST00000530660 ANK3Q12955 4377 aaKnown RBP8.94□□□□□ -0.98
PCF11-204ENST00000530660 CNBPP62633 177 aaKnown RBP8.93□□□□□ -0.98
PCF11-204ENST00000530660 KRTAP26-1Q6PEX3 210 aa8.93□□□□□ -0.98
PCF11-204ENST00000530660 Q8NAQ8 132 aa8.92□□□□□ -0.98
PCF11-204ENST00000530660 IGLV1-50A0A075B6I6 118 aa8.92□□□□□ -0.98
PCF11-204ENST00000530660 LINC01554Q52M75 96 aa8.91□□□□□ -0.98
PCF11-204ENST00000530660 CSMD3Q7Z407 3707 aa8.9□□□□□ -0.98
PCF11-204ENST00000530660 KRTAP10-3P60369 221 aa8.9□□□□□ -0.98
PCF11-204ENST00000530660 HIVEP1P15822 2718 aa8.9□□□□□ -0.98
PCF11-204ENST00000530660 IGLV5-37A0A075B6J1 123 aa8.87□□□□□ -0.99
PCF11-204ENST00000530660 SPART-AS1P0CW21 52 aa8.87□□□□□ -0.99
PCF11-204ENST00000530660 SPRR1AP35321 89 aa8.87□□□□□ -0.99
PCF11-204ENST00000530660 HRES1P13985 223 aa8.85□□□□□ -0.99
PCF11-204ENST00000530660 KRTAP7-1Q8IUC3 87 aa8.85□□□□□ -0.99
PCF11-204ENST00000530660 TENM2Q9NT68 2774 aa8.84□□□□□ -0.99
PCF11-204ENST00000530660 PDZD2O15018 2839 aa8.84□□□□□ -0.99
PCF11-204ENST00000530660 TRRAPQ9Y4A5 3859 aa8.82□□□□□ -1
PCF11-204ENST00000530660 A8MWP4 228 aa8.81□□□□□ -1
PCF11-204ENST00000530660 H0Y9J4 135 aa8.81□□□□□ -1
PCF11-204ENST00000530660 KRTAP1-1Q07627 177 aa8.81□□□□□ -1
PCF11-204ENST00000530660 PRR26Q8N8Z3 221 aa8.81□□□□□ -1
PCF11-204ENST00000530660 FBN1P35555 2871 aaKnown RBP8.79□□□□□ -1
PCF11-204ENST00000530660 PLA2G1BP04054 148 aaKnown RBP8.79□□□□□ -1
PCF11-204ENST00000530660 PRLHP81277 87 aa8.78□□□□□ -1
PCF11-204ENST00000530660 MMP24-AS1A0A0U1RRL7 71 aa8.77□□□□□ -1.01
PCF11-204ENST00000530660 LINC00472Q9H8W2 130 aa8.77□□□□□ -1.01
PCF11-204ENST00000530660 REG3GQ6UW15 175 aa8.75□□□□□ -1.01
PCF11-204ENST00000530660 TENM1Q9UKZ4 2725 aa8.74□□□□□ -1.01
PCF11-204ENST00000530660 TEP1Q99973 2627 aaKnown RBP8.74□□□□□ -1.01
PCF11-204ENST00000530660 A0A096LNI7 61 aa8.74□□□□□ -1.01
PCF11-204ENST00000530660 IGKV2-24A0A0C4DH68 120 aa8.74□□□□□ -1.01
PCF11-204ENST00000530660 PLA2G2DQ9UNK4 145 aa8.74□□□□□ -1.01
PCF11-204ENST00000530660 USP24Q9UPU5 2620 aa8.72□□□□□ -1.01
PCF11-204ENST00000530660 IGLV8-61A0A075B6I0 122 aa8.7□□□□□ -1.02
PCF11-204ENST00000530660 SMR3AQ99954 134 aa8.7□□□□□ -1.02
PCF11-204ENST00000530660 RTL8CO15255 209 aa8.69□□□□□ -1.02
PCF11-204ENST00000530660 TLX1NBP0CAT3 122 aa8.69□□□□□ -1.02
PCF11-204ENST00000530660 CASC10Q5T4H9 136 aa8.69□□□□□ -1.02
PCF11-204ENST00000530660 ITPR2Q14571 2701 aa8.68□□□□□ -1.02
PCF11-204ENST00000530660 CSAG1Q6PB30 78 aa8.67□□□□□ -1.02
PCF11-204ENST00000530660 COL7A1Q02388 2944 aa8.67□□□□□ -1.02
PCF11-204ENST00000530660 HELZ2Q9BYK8 2649 aaKnown RBP8.66□□□□□ -1.02
PCF11-204ENST00000530660 RETNLBQ9BQ08 111 aa8.66□□□□□ -1.02
PCF11-204ENST00000530660 LINC01556Q5JQF7 62 aa8.65□□□□□ -1.03
PCF11-204ENST00000530660 Q6ZR54 194 aa8.65□□□□□ -1.03
PCF11-204ENST00000530660 H3BNG1 76 aa8.63□□□□□ -1.03
PCF11-204ENST00000530660 TP53AIP1Q9HCN2 124 aa8.63□□□□□ -1.03
PCF11-204ENST00000530660 TENM3Q9P273 2699 aa8.62□□□□□ -1.03
PCF11-204ENST00000530660 K7EIL1 84 aa8.62□□□□□ -1.03
PCF11-204ENST00000530660 ATRQ13535 2644 aa8.62□□□□□ -1.03
PCF11-204ENST00000530660 FASNP49327 2511 aaKnown RBP8.61□□□□□ -1.03
PCF11-204ENST00000530660 TENM4Q6N022 2769 aa8.6□□□□□ -1.03
PCF11-204ENST00000530660 DEFB131BA0A096LNP1 70 aa8.6□□□□□ -1.03
PCF11-204ENST00000530660 ASB16-AS1Q495Z4 193 aa8.58□□□□□ -1.04
PCF11-204ENST00000530660 C8orf17Q9NRJ1 99 aa8.58□□□□□ -1.04
PCF11-204ENST00000530660 IGHV6-1A0A0B4J1U7 121 aa8.57□□□□□ -1.04
PCF11-204ENST00000530660 SPATA8Q6RVD6 105 aa8.56□□□□□ -1.04
PCF11-204ENST00000530660 HECTD1Q9ULT8 2610 aa8.56□□□□□ -1.04
PCF11-204ENST00000530660 A0A1B0GU69 56 aa8.55□□□□□ -1.04
PCF11-204ENST00000530660 Q96NJ1 140 aa8.55□□□□□ -1.04
PCF11-204ENST00000530660 DNAH10OSP0CZ25 163 aa8.54□□□□□ -1.04
PCF11-204ENST00000530660 KRTAP11-1Q8IUC1 163 aa8.54□□□□□ -1.04
PCF11-204ENST00000530660 A0A087X002 238 aa8.53□□□□□ -1.04
PCF11-204ENST00000530660 NOTCH2NLQ7Z3S9 236 aa8.53□□□□□ -1.04
PCF11-204ENST00000530660 ALMS1Q8TCU4 4167 aa8.53□□□□□ -1.04
PCF11-204ENST00000530660 MIR22HGQ0VDD5 57 aa8.53□□□□□ -1.04
PCF11-204ENST00000530660 ANK2Q01484 3957 aa8.51□□□□□ -1.05
PCF11-204ENST00000530660 Q5W150 140 aa8.5□□□□□ -1.05
PCF11-204ENST00000530660 ACYP2P14621 99 aa8.5□□□□□ -1.05
PCF11-204ENST00000530660 OXLD1Q5BKU9 147 aa8.5□□□□□ -1.05
PCF11-204ENST00000530660 C1orf134Q5TEV5 83 aa8.49□□□□□ -1.05
PCF11-204ENST00000530660 NBEAL1Q6ZS30 2694 aa8.49□□□□□ -1.05
PCF11-204ENST00000530660 MRPL34Q9BQ48 92 aaKnown RBP8.49□□□□□ -1.05
PCF11-204ENST00000530660 ZNF706Q9Y5V0 76 aaPredicted RBP8.48□□□□□ -1.05
PCF11-204ENST00000530660 SPRR1BP22528 89 aa8.47□□□□□ -1.05
PCF11-204ENST00000530660 DNAH1Q9P2D7 4330 aa8.46□□□□□ -1.05
PCF11-204ENST00000530660 KRTAP10-11P60412 298 aa8.46□□□□□ -1.05
PCF11-204ENST00000530660 FLNBO75369 2602 aaKnown RBP8.46□□□□□ -1.06
PCF11-204ENST00000530660 IGLV9-49A0A0B4J1Y8 123 aa8.46□□□□□ -1.06
PCF11-204ENST00000530660 A0A1B0GVX0 72 aa8.46□□□□□ -1.06
PCF11-204ENST00000530660 UQCR11O14957 56 aa8.46□□□□□ -1.06
PCF11-204ENST00000530660 INAFM1C9JVW0 142 aa8.46□□□□□ -1.06
PCF11-204ENST00000530660 CHTF8P0CG12 524 aa8.42□□□□□ -1.06
PCF11-204ENST00000530660 NSD1Q96L73 2696 aaPredicted RBP8.42□□□□□ -1.06
PCF11-204ENST00000530660 DNAH10Q8IVF4 4471 aa8.42□□□□□ -1.06
PCF11-204ENST00000530660 ZNF861PO60384 105 aa8.41□□□□□ -1.06
PCF11-204ENST00000530660 CDK2AP2O75956 126 aa8.4□□□□□ -1.06
PCF11-204ENST00000530660 DMAC1Q96GE9 116 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms