RNA–Protein interactions for RNA: ENST00000522552.5

SKP1-209, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SKP1, Length 1,683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-209ENST00000522552 IAPPP10997 89 aa1.08□□□□□ -2.24
SKP1-209ENST00000522552 ABCA2Q9BZC7 2435 aa1.08□□□□□ -2.24
SKP1-209ENST00000522552 FBN2P35556 2912 aa1.08□□□□□ -2.24
SKP1-209ENST00000522552 DEFB130BP0DP73 79 aa1.07□□□□□ -2.24
SKP1-209ENST00000522552 DEFB130AP0DP74 79 aa1.07□□□□□ -2.24
SKP1-209ENST00000522552 FRAS1Q86XX4 4008 aa1.07□□□□□ -2.24
SKP1-209ENST00000522552 DDX60Q8IY21 1712 aaKnown RBP1.07□□□□□ -2.24
SKP1-209ENST00000522552 KRTAP21-2Q3LI59 83 aa1.07□□□□□ -2.24
SKP1-209ENST00000522552 LINC00308Q8TCZ7 52 aa1.07□□□□□ -2.24
SKP1-209ENST00000522552 TMEM167BQ9NRX6 74 aa1.07□□□□□ -2.24
SKP1-209ENST00000522552 TIMM8BQ9Y5J9 83 aaPredicted RBP1.07□□□□□ -2.24
SKP1-209ENST00000522552 FAM208AQ9UK61 1670 aaKnown RBP1.06□□□□□ -2.24
SKP1-209ENST00000522552 IGF2RP11717 2491 aa1.06□□□□□ -2.24
SKP1-209ENST00000522552 C6orf48Q9UBA6 75 aa1.06□□□□□ -2.24
SKP1-209ENST00000522552 VWFP04275 2813 aa1.05□□□□□ -2.24
SKP1-209ENST00000522552 IQGAP1P46940 1657 aa1.05□□□□□ -2.24
SKP1-209ENST00000522552 DEFB109BQ30KR1 87 aa1.05□□□□□ -2.24
SKP1-209ENST00000522552 BSNQ9UPA5 3926 aa1.04□□□□□ -2.24
SKP1-209ENST00000522552 NCOR1O75376 2440 aa1.04□□□□□ -2.24
SKP1-209ENST00000522552 CSPG4Q6UVK1 2322 aa1.04□□□□□ -2.24
SKP1-209ENST00000522552 LMO7Q8WWI1 1683 aa1.03□□□□□ -2.25
SKP1-209ENST00000522552 RPS27P42677 84 aaKnown RBP1.02□□□□□ -2.25
SKP1-209ENST00000522552 RPS27LQ71UM5 84 aaKnown RBP1.02□□□□□ -2.25
SKP1-209ENST00000522552 ZNF469Q96JG9 3925 aaPredicted RBP1.01□□□□□ -2.25
SKP1-209ENST00000522552 TENM4Q6N022 2769 aa1.01□□□□□ -2.25
SKP1-209ENST00000522552 PCNX1Q96RV3 2341 aa1.01□□□□□ -2.25
SKP1-209ENST00000522552 SPINK6Q6UWN8 80 aa1□□□□□ -2.25
SKP1-209ENST00000522552 KRTAP19-3Q7Z4W3 81 aa0.99□□□□□ -2.25
SKP1-209ENST00000522552 OTOGQ6ZRI0 2925 aa0.99□□□□□ -2.25
SKP1-209ENST00000522552 CHD8Q9HCK8 2581 aa0.99□□□□□ -2.25
SKP1-209ENST00000522552 FBN3Q75N90 2809 aa0.99□□□□□ -2.25
SKP1-209ENST00000522552 TFF3Q07654 80 aa0.98□□□□□ -2.25
SKP1-209ENST00000522552 FAT2Q9NYQ8 4349 aa0.98□□□□□ -2.25
SKP1-209ENST00000522552 PRRC2CQ9Y520 2896 aaKnown RBP0.98□□□□□ -2.25
SKP1-209ENST00000522552 SMR3AQ99954 134 aa0.97□□□□□ -2.25
SKP1-209ENST00000522552 AKAP13Q12802 2813 aa0.96□□□□□ -2.26
SKP1-209ENST00000522552 HECTD1Q9ULT8 2610 aa0.96□□□□□ -2.26
SKP1-209ENST00000522552 KRTAP2-3P0C7H8 128 aa0.96□□□□□ -2.26
SKP1-209ENST00000522552 WT1-ASQ06250 92 aa0.96□□□□□ -2.26
SKP1-209ENST00000522552 KRTAP2-4Q9BYR9 128 aa0.96□□□□□ -2.26
SKP1-209ENST00000522552 KRTAP2-1Q9BYU5 128 aa0.96□□□□□ -2.26
SKP1-209ENST00000522552 PRKDCP78527 4128 aaKnown RBP0.95□□□□□ -2.26
SKP1-209ENST00000522552 ZFYVE26Q68DK2 2539 aa0.95□□□□□ -2.26
SKP1-209ENST00000522552 NFAT5O94916 1531 aa0.95□□□□□ -2.26
SKP1-209ENST00000522552 TENM1Q9UKZ4 2725 aa0.94□□□□□ -2.26
SKP1-209ENST00000522552 UNC79Q9P2D8 2635 aa0.94□□□□□ -2.26
SKP1-209ENST00000522552 CEP290O15078 2479 aa0.93□□□□□ -2.26
SKP1-209ENST00000522552 ATP7AQ04656 1500 aa0.92□□□□□ -2.26
SKP1-209ENST00000522552 CELSR1Q9NYQ6 3014 aa0.92□□□□□ -2.26
SKP1-209ENST00000522552 CREBBPQ92793 2442 aa0.92□□□□□ -2.26
SKP1-209ENST00000522552 AHNAK2Q8IVF2 5795 aa0.92□□□□□ -2.26
SKP1-209ENST00000522552 TRPM2O94759 1503 aa0.92□□□□□ -2.26
SKP1-209ENST00000522552 SMIM2Q9BVW6 85 aa0.91□□□□□ -2.26
SKP1-209ENST00000522552 CRCT1Q9UGL9 99 aa0.91□□□□□ -2.26
SKP1-209ENST00000522552 S4R3F8 94 aa0.91□□□□□ -2.26
SKP1-209ENST00000522552 KIF21BO75037 1637 aa0.91□□□□□ -2.26
SKP1-209ENST00000522552 SPINK1P00995 79 aa0.91□□□□□ -2.26
SKP1-209ENST00000522552 PKD1L1Q8TDX9 2849 aa0.9□□□□□ -2.26
SKP1-209ENST00000522552 NOTCH1P46531 2555 aa0.9□□□□□ -2.27
SKP1-209ENST00000522552 PKD1L2Q7Z442 2459 aa0.89□□□□□ -2.27
SKP1-209ENST00000522552 TNRC18O15417 2968 aaPredicted RBP0.89□□□□□ -2.27
SKP1-209ENST00000522552 DEFB106AQ8N104 65 aa0.88□□□□□ -2.27
SKP1-209ENST00000522552 KRTAP4-1Q9BYQ7 146 aa0.88□□□□□ -2.27
SKP1-209ENST00000522552 NBASA2RRP1 2371 aa0.88□□□□□ -2.27
SKP1-209ENST00000522552 PTPN13Q12923 2485 aa0.88□□□□□ -2.27
SKP1-209ENST00000522552 WFDC10BQ8IUB3 73 aa0.88□□□□□ -2.27
SKP1-209ENST00000522552 KAAG1Q9UBP8 84 aa0.88□□□□□ -2.27
SKP1-209ENST00000522552 SAMD9LQ8IVG5 1584 aa0.88□□□□□ -2.27
SKP1-209ENST00000522552 A0A0C4DFX4 3053 aa0.87□□□□□ -2.27
SKP1-209ENST00000522552 H3BUA1 57 aa0.87□□□□□ -2.27
SKP1-209ENST00000522552 PRLHP81277 87 aa0.87□□□□□ -2.27
SKP1-209ENST00000522552 HUWE1Q7Z6Z7 4374 aaKnown RBP0.87□□□□□ -2.27
SKP1-209ENST00000522552 EP300Q09472 2414 aaPredicted RBP0.86□□□□□ -2.27
SKP1-209ENST00000522552 LYSTQ99698 3801 aa0.86□□□□□ -2.27
SKP1-209ENST00000522552 MAP1BP46821 2468 aaKnown RBP0.86□□□□□ -2.27
SKP1-209ENST00000522552 TNXBP22105 4242 aa0.86□□□□□ -2.27
SKP1-209ENST00000522552 U3KQA8 63 aa0.85□□□□□ -2.27
SKP1-209ENST00000522552 SRRM2Q9UQ35 2752 aaKnown RBP0.85□□□□□ -2.27
SKP1-209ENST00000522552 WNK1Q9H4A3 2382 aa0.84□□□□□ -2.28
SKP1-209ENST00000522552 NDUFA1O15239 70 aa0.84□□□□□ -2.28
SKP1-209ENST00000522552 DEFB135Q30KP9 77 aa0.84□□□□□ -2.28
SKP1-209ENST00000522552 SETXQ7Z333 2677 aaKnown RBP0.83□□□□□ -2.28
SKP1-209ENST00000522552 SYNE1Q8NF91 8797 aaKnown RBP0.83□□□□□ -2.28
SKP1-209ENST00000522552 M0R2T5 61 aa0.83□□□□□ -2.28
SKP1-209ENST00000522552 UBR5O95071 2799 aaPredicted RBP0.83□□□□□ -2.28
SKP1-209ENST00000522552 NAV2Q8IVL1 2488 aa0.81□□□□□ -2.28
SKP1-209ENST00000522552 HIVEP3Q5T1R4 2406 aa0.81□□□□□ -2.28
SKP1-209ENST00000522552 USP24Q9UPU5 2620 aa0.8□□□□□ -2.28
SKP1-209ENST00000522552 CLTCL1P53675 1640 aa0.8□□□□□ -2.28
SKP1-209ENST00000522552 H0YGG7 62 aa0.8□□□□□ -2.28
SKP1-209ENST00000522552 PRM1P04553 51 aa0.79□□□□□ -2.28
SKP1-209ENST00000522552 NF1P21359 2839 aa0.79□□□□□ -2.28
SKP1-209ENST00000522552 ZZEF1O43149 2961 aa0.79□□□□□ -2.28
SKP1-209ENST00000522552 MUC5ACP98088 5654 aa0.78□□□□□ -2.28
SKP1-209ENST00000522552 APC2O95996 2303 aa0.78□□□□□ -2.29
SKP1-209ENST00000522552 PDZD2O15018 2839 aa0.77□□□□□ -2.29
SKP1-209ENST00000522552 ACANP16112 2415 aa0.76□□□□□ -2.29
SKP1-209ENST00000522552 KMT2AQ03164 3969 aa0.76□□□□□ -2.29
SKP1-209ENST00000522552 IGLV5-48A0A075B6I7 105 aa0.76□□□□□ -2.29
SKP1-209ENST00000522552 FCGBPQ9Y6R7 5405 aaPredicted RBP0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms