RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	TRBV7-7	A0A0K0K1E9	115 aa		8.07	□□□□□ -1.12
LMNA-223	ENST00000515459	S100A2	P29034	98 aa		8.07	□□□□□ -1.12
LMNA-223	ENST00000515459	SCGB1D4	Q6XE38	83 aa		8.07	□□□□□ -1.12
LMNA-223	ENST00000515459	USH2A	O75445	5202 aa		8.07	□□□□□ -1.12
LMNA-223	ENST00000515459	SSPO	A2VEC9	5147 aa		8.07	□□□□□ -1.12
LMNA-223	ENST00000515459	IFITM1	P13164	125 aa		8.06	□□□□□ -1.12
LMNA-223	ENST00000515459		Q6JHZ5	121 aa		8.06	□□□□□ -1.12
LMNA-223	ENST00000515459	PET117	Q6UWS5	81 aa		8.05	□□□□□ -1.12
LMNA-223	ENST00000515459	CLEC2B	Q92478	149 aa		8.05	□□□□□ -1.12
LMNA-223	ENST00000515459	SMIM11B	Q8TCY0	68 aa		8.03	□□□□□ -1.12
LMNA-223	ENST00000515459		Q96NJ1	140 aa		8.03	□□□□□ -1.12
LMNA-223	ENST00000515459	TRBV20-1	A0A075B6N2	111 aa		8.02	□□□□□ -1.13
LMNA-223	ENST00000515459	IGFL1	Q6UW32	110 aa		8.02	□□□□□ -1.13
LMNA-223	ENST00000515459		Q6ZVH6	145 aa		8.02	□□□□□ -1.13
LMNA-223	ENST00000515459	TRAV13-2	A0A0B4J235	113 aa		8.01	□□□□□ -1.13
LMNA-223	ENST00000515459	C3orf79	P0CE67	100 aa		8.01	□□□□□ -1.13
LMNA-223	ENST00000515459	KRTDAP	P60985	99 aa		8.01	□□□□□ -1.13
LMNA-223	ENST00000515459	MUSTN1	Q8IVN3	82 aa		8.01	□□□□□ -1.13
LMNA-223	ENST00000515459	HIST3H2BB	Q8N257	126 aa		8.01	□□□□□ -1.13
LMNA-223	ENST00000515459	SNRPE	P62304	92 aa	Known RBP	8	□□□□□ -1.13
LMNA-223	ENST00000515459	KRTAP19-1	Q8IUB9	90 aa		8	□□□□□ -1.13
LMNA-223	ENST00000515459	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	7.99	□□□□□ -1.13
LMNA-223	ENST00000515459	VAMP3	Q15836	100 aa		7.99	□□□□□ -1.13
LMNA-223	ENST00000515459		Q6ZQY7	126 aa		7.99	□□□□□ -1.13
LMNA-223	ENST00000515459	HIST1H2BL	Q99880	126 aa		7.99	□□□□□ -1.13
LMNA-223	ENST00000515459	LST1	O00453	97 aa		7.98	□□□□□ -1.13
LMNA-223	ENST00000515459	MT2A	P02795	61 aa		7.98	□□□□□ -1.13
LMNA-223	ENST00000515459	OCIAD2	Q56VL3	154 aa		7.98	□□□□□ -1.13
LMNA-223	ENST00000515459	LINC00575	Q6W349	94 aa		7.98	□□□□□ -1.13
LMNA-223	ENST00000515459	C20orf166-AS1	Q96NR2	134 aa		7.98	□□□□□ -1.13
LMNA-223	ENST00000515459	hADV29S1	A0JD25	119 aa		7.95	□□□□□ -1.14
LMNA-223	ENST00000515459		A8MUU9	505 aa		7.95	□□□□□ -1.14
LMNA-223	ENST00000515459	LCE2B	O14633	110 aa		7.95	□□□□□ -1.14
LMNA-223	ENST00000515459	ANKRD39	Q53RE8	183 aa		7.94	□□□□□ -1.14
LMNA-223	ENST00000515459	MT1F	P04733	61 aa		7.92	□□□□□ -1.14
LMNA-223	ENST00000515459	SS18L2	Q9UHA2	77 aa		7.91	□□□□□ -1.14
LMNA-223	ENST00000515459	FAM236D	A0A1B0GTK5	79 aa		7.9	□□□□□ -1.14
LMNA-223	ENST00000515459	HSBP1L1	C9JCN9	74 aa		7.9	□□□□□ -1.14
LMNA-223	ENST00000515459	FAM236C	P0DP71	79 aa		7.9	□□□□□ -1.14
LMNA-223	ENST00000515459	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	7.9	□□□□□ -1.14
LMNA-223	ENST00000515459	KRTAP9-3	Q9BYQ3	159 aa		7.9	□□□□□ -1.14
LMNA-223	ENST00000515459	SCGB1D1	O95968	90 aa		7.89	□□□□□ -1.15
LMNA-223	ENST00000515459	KRTAP10-10	P60014	251 aa		7.89	□□□□□ -1.15
LMNA-223	ENST00000515459	PPDPFL	Q8WWR9	84 aa		7.89	□□□□□ -1.15
LMNA-223	ENST00000515459	SNHG12	Q9BXW3	62 aa		7.89	□□□□□ -1.15
LMNA-223	ENST00000515459		H3BUT2	72 aa		7.88	□□□□□ -1.15
LMNA-223	ENST00000515459	TMA7	Q9Y2S6	64 aa	Known RBP	7.88	□□□□□ -1.15
LMNA-223	ENST00000515459	MACF1	Q9UPN3	7388 aa	Known RBP	7.87	□□□□□ -1.15
LMNA-223	ENST00000515459	ATOH7	Q8N100	152 aa		7.87	□□□□□ -1.15
LMNA-223	ENST00000515459	SYNE2	Q8WXH0	6885 aa	Known RBP	7.85	□□□□□ -1.15
LMNA-223	ENST00000515459	DSCR10	P59022	87 aa		7.83	□□□□□ -1.16
LMNA-223	ENST00000515459	RBM12B-AS1	Q9P1G2	102 aa		7.83	□□□□□ -1.16
LMNA-223	ENST00000515459	KRTAP16-1	A8MUX0	517 aa		7.82	□□□□□ -1.16
LMNA-223	ENST00000515459	TEN1	Q86WV5	123 aa		7.82	□□□□□ -1.16
LMNA-223	ENST00000515459	LINC00846	Q9NV44	126 aa		7.82	□□□□□ -1.16
LMNA-223	ENST00000515459	BVES-AS1	Q5T3Y7	98 aa		7.81	□□□□□ -1.16
LMNA-223	ENST00000515459	MPLKIP	Q8TAP9	179 aa		7.8	□□□□□ -1.16
LMNA-223	ENST00000515459		A0A087WSZ3	146 aa		7.79	□□□□□ -1.16
LMNA-223	ENST00000515459	HRES1	P13985	223 aa		7.78	□□□□□ -1.16
LMNA-223	ENST00000515459	C12orf57	Q99622	126 aa		7.77	□□□□□ -1.17
LMNA-223	ENST00000515459	VAMP8	Q9BV40	100 aa		7.77	□□□□□ -1.17
LMNA-223	ENST00000515459	SIGMAR1	Q99720	223 aa		7.76	□□□□□ -1.17
LMNA-223	ENST00000515459	NDUFV3	P56181	108 aa	Known RBP	7.75	□□□□□ -1.17
LMNA-223	ENST00000515459	LINC00313	P59037	77 aa		7.75	□□□□□ -1.17
LMNA-223	ENST00000515459	KRTAP19-6	Q3LI70	58 aa		7.75	□□□□□ -1.17
LMNA-223	ENST00000515459	COX8A	P10176	69 aa		7.74	□□□□□ -1.17
LMNA-223	ENST00000515459	SPATA45	Q537H7	98 aa		7.74	□□□□□ -1.17
LMNA-223	ENST00000515459	DLEU1	O43261	78 aa		7.73	□□□□□ -1.17
LMNA-223	ENST00000515459	PYY3	Q5JQD4	70 aa		7.73	□□□□□ -1.17
LMNA-223	ENST00000515459	PAM16	Q9Y3D7	125 aa		7.73	□□□□□ -1.17
LMNA-223	ENST00000515459	SNCG	O76070	127 aa		7.72	□□□□□ -1.17
LMNA-223	ENST00000515459	NOTCH2NL	Q7Z3S9	236 aa		7.72	□□□□□ -1.17
LMNA-223	ENST00000515459		H3BMG7	143 aa		7.69	□□□□□ -1.18
LMNA-223	ENST00000515459	MTURN	Q8N3F0	131 aa		7.69	□□□□□ -1.18
LMNA-223	ENST00000515459	C14orf144	Q96I85	54 aa		7.69	□□□□□ -1.18
LMNA-223	ENST00000515459	IGKV4-1	P06312	121 aa		7.68	□□□□□ -1.18
LMNA-223	ENST00000515459	HIST1H4G	Q99525	98 aa		7.67	□□□□□ -1.18
LMNA-223	ENST00000515459		H0YGX0	51 aa		7.66	□□□□□ -1.18
LMNA-223	ENST00000515459	HIGD1B	Q9P298	99 aa		7.66	□□□□□ -1.18
LMNA-223	ENST00000515459		A0A1W2PNM2	257 aa		7.65	□□□□□ -1.18
LMNA-223	ENST00000515459	FAM218A	Q96MZ4	157 aa		7.65	□□□□□ -1.18
LMNA-223	ENST00000515459	GHRH	P01286	108 aa		7.64	□□□□□ -1.19
LMNA-223	ENST00000515459	KRTAP6-3	Q3LI67	103 aa		7.64	□□□□□ -1.19
LMNA-223	ENST00000515459	SMIM6	P0DI80	62 aa		7.63	□□□□□ -1.19
LMNA-223	ENST00000515459	FABP2	P12104	132 aa		7.63	□□□□□ -1.19
LMNA-223	ENST00000515459	UQCR10	Q9UDW1	63 aa		7.62	□□□□□ -1.19
LMNA-223	ENST00000515459	IGHV6-1	A0A0B4J1U7	121 aa		7.6	□□□□□ -1.19
LMNA-223	ENST00000515459	DEFB116	Q30KQ4	102 aa		7.6	□□□□□ -1.19
LMNA-223	ENST00000515459	RAB37	Q96AX2	223 aa		7.6	□□□□□ -1.19
LMNA-223	ENST00000515459	TRBV7-4	A0A0J9YYF1	115 aa		7.59	□□□□□ -1.19
LMNA-223	ENST00000515459	LOC105371267	A0A1B0GV96	52 aa		7.59	□□□□□ -1.19
LMNA-223	ENST00000515459		A8MWP4	228 aa		7.59	□□□□□ -1.19
LMNA-223	ENST00000515459	TMEM238L	A0A1B0GVL6	79 aa		7.58	□□□□□ -1.2
LMNA-223	ENST00000515459		A0A1B0GX51	115 aa		7.58	□□□□□ -1.2
LMNA-223	ENST00000515459		A6NJY4	79 aa		7.58	□□□□□ -1.2
LMNA-223	ENST00000515459	C2orf91	Q6ZV80	131 aa		7.58	□□□□□ -1.2
LMNA-223	ENST00000515459	ANKRD29	Q8N6D5	301 aa		7.57	□□□□□ -1.2
LMNA-223	ENST00000515459	LINC00472	Q9H8W2	130 aa		7.57	□□□□□ -1.2
LMNA-223	ENST00000515459		A0A0B4J2C4	111 aa		7.55	□□□□□ -1.2
LMNA-223	ENST00000515459	SPINK7	P58062	85 aa		7.55	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms