RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 CRYGAP11844 174 aa12.04□□□□□ -0.48
USP53-208ENST00000514305 ERC2-IT1O76042 136 aa12.03□□□□□ -0.48
USP53-208ENST00000514305 A0A1B0GX51 115 aa12.02□□□□□ -0.49
USP53-208ENST00000514305 TSPAN13O95857 204 aa12.02□□□□□ -0.49
USP53-208ENST00000514305 GAGE2AQ6NT46 116 aa12.02□□□□□ -0.49
USP53-208ENST00000514305 KRTAP1-4P0C5Y4 121 aa12.01□□□□□ -0.49
USP53-208ENST00000514305 SCGB1C2P0DMR2 95 aa12.01□□□□□ -0.49
USP53-208ENST00000514305 TRIAP1O43715 76 aa12□□□□□ -0.49
USP53-208ENST00000514305 LINC00483Q53H64 154 aa11.98□□□□□ -0.49
USP53-208ENST00000514305 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.98□□□□□ -0.49
USP53-208ENST00000514305 LRP2P98164 4655 aa11.98□□□□□ -0.49
USP53-208ENST00000514305 TEX49A0A1B0GTD5 131 aa11.97□□□□□ -0.49
USP53-208ENST00000514305 OCIAD2Q56VL3 154 aa11.97□□□□□ -0.49
USP53-208ENST00000514305 LYRM7Q5U5X0 104 aa11.97□□□□□ -0.49
USP53-208ENST00000514305 PRR26Q8N8Z3 221 aa11.95□□□□□ -0.5
USP53-208ENST00000514305 ST20-AS1Q8NBB2 130 aa11.95□□□□□ -0.5
USP53-208ENST00000514305 DEFB105AQ8NG35 78 aa11.95□□□□□ -0.5
USP53-208ENST00000514305 LAMTOR3Q9UHA4 124 aa11.95□□□□□ -0.5
USP53-208ENST00000514305 PCP4L1A6NKN8 68 aa11.94□□□□□ -0.5
USP53-208ENST00000514305 DNAL4O96015 105 aa11.94□□□□□ -0.5
USP53-208ENST00000514305 SPRR1BP22528 89 aa11.94□□□□□ -0.5
USP53-208ENST00000514305 TYMSOSQ8TAI1 123 aa11.94□□□□□ -0.5
USP53-208ENST00000514305 PPDPFLQ8WWR9 84 aa11.94□□□□□ -0.5
USP53-208ENST00000514305 H3BQ85 93 aa11.93□□□□□ -0.5
USP53-208ENST00000514305 Q6ZQY7 126 aa11.93□□□□□ -0.5
USP53-208ENST00000514305 ANAPC11Q9NYG5 84 aa11.93□□□□□ -0.5
USP53-208ENST00000514305 IGLV5-48A0A075B6I7 105 aa11.91□□□□□ -0.5
USP53-208ENST00000514305 RNF213Q63HN8 5207 aa11.89□□□□□ -0.51
USP53-208ENST00000514305 A0A087X002 238 aa11.89□□□□□ -0.51
USP53-208ENST00000514305 COL5A1-AS1Q5SY13 56 aa11.88□□□□□ -0.51
USP53-208ENST00000514305 SSBP3-AS1Q7Z2R9 100 aa11.88□□□□□ -0.51
USP53-208ENST00000514305 CLEC2BQ92478 149 aa11.88□□□□□ -0.51
USP53-208ENST00000514305 SNHG12Q9BXW3 62 aa11.88□□□□□ -0.51
USP53-208ENST00000514305 FAM218AQ96MZ4 157 aa11.87□□□□□ -0.51
USP53-208ENST00000514305 IGLV9-49A0A0B4J1Y8 123 aa11.86□□□□□ -0.51
USP53-208ENST00000514305 F8WEM9 126 aa11.86□□□□□ -0.51
USP53-208ENST00000514305 KRTAP4-2Q9BYR5 136 aa11.86□□□□□ -0.51
USP53-208ENST00000514305 C9orf118A6NHY6 69 aa11.85□□□□□ -0.51
USP53-208ENST00000514305 H3BUT2 72 aa11.85□□□□□ -0.51
USP53-208ENST00000514305 TRACP01848 142 aa11.85□□□□□ -0.51
USP53-208ENST00000514305 C9orf153Q5TBE3 101 aa11.85□□□□□ -0.51
USP53-208ENST00000514305 TRBV20-1A0A075B6N2 111 aa11.84□□□□□ -0.51
USP53-208ENST00000514305 LST1O00453 97 aa11.84□□□□□ -0.51
USP53-208ENST00000514305 LINC01547P58512 204 aaPredicted RBP11.84□□□□□ -0.51
USP53-208ENST00000514305 ATXN8Q156A1 80 aa11.84□□□□□ -0.51
USP53-208ENST00000514305 KRTAP13-2Q52LG2 175 aa11.84□□□□□ -0.51
USP53-208ENST00000514305 Q8N377 158 aa11.84□□□□□ -0.51
USP53-208ENST00000514305 ORMDL1Q9P0S3 153 aa11.84□□□□□ -0.51
USP53-208ENST00000514305 C3orf22Q8N5N4 141 aa11.83□□□□□ -0.52
USP53-208ENST00000514305 Q8NBF4 154 aa11.83□□□□□ -0.52
USP53-208ENST00000514305 TAX1BP3O14907 124 aa11.82□□□□□ -0.52
USP53-208ENST00000514305 SPAG11AQ6PDA7 123 aa11.82□□□□□ -0.52
USP53-208ENST00000514305 MOBPQ13875 183 aa11.81□□□□□ -0.52
USP53-208ENST00000514305 NAA38Q9BRA0 125 aaKnown RBP11.81□□□□□ -0.52
USP53-208ENST00000514305 TMEM256-PLSCR3K7ERE1 68 aa11.8□□□□□ -0.52
USP53-208ENST00000514305 FABP2P12104 132 aa11.8□□□□□ -0.52
USP53-208ENST00000514305 LINC00304Q8N9R0 145 aa11.79□□□□□ -0.52
USP53-208ENST00000514305 A0A1W2PPM0 123 aa11.77□□□□□ -0.53
USP53-208ENST00000514305 SMIM29Q86T20 159 aa11.77□□□□□ -0.53
USP53-208ENST00000514305 TCL1BO95988 128 aa11.75□□□□□ -0.53
USP53-208ENST00000514305 Q6JHZ5 121 aa11.74□□□□□ -0.53
USP53-208ENST00000514305 SPINK1P00995 79 aa11.72□□□□□ -0.53
USP53-208ENST00000514305 NDUFV3P56181 108 aaKnown RBP11.72□□□□□ -0.53
USP53-208ENST00000514305 KRTAP4-11Q9BYQ6 195 aa11.72□□□□□ -0.53
USP53-208ENST00000514305 UBE2V1Q13404 147 aa11.71□□□□□ -0.53
USP53-208ENST00000514305 LPAP08519 4548 aa11.7□□□□□ -0.54
USP53-208ENST00000514305 IGLV8-61A0A075B6I0 122 aa11.69□□□□□ -0.54
USP53-208ENST00000514305 BAALC-AS2P0C853 105 aa11.69□□□□□ -0.54
USP53-208ENST00000514305 CD164Q04900 197 aa11.68□□□□□ -0.54
USP53-208ENST00000514305 PRR4Q16378 134 aa11.68□□□□□ -0.54
USP53-208ENST00000514305 H3BMG7 143 aa11.67□□□□□ -0.54
USP53-208ENST00000514305 SPCS1Q9Y6A9 102 aa11.67□□□□□ -0.54
USP53-208ENST00000514305 RPS29P62273 56 aaKnown RBP11.66□□□□□ -0.54
USP53-208ENST00000514305 LCE5AQ5TCM9 118 aa11.64□□□□□ -0.55
USP53-208ENST00000514305 ANKRD29Q8N6D5 301 aa11.64□□□□□ -0.55
USP53-208ENST00000514305 C9JAW5 83 aa11.63□□□□□ -0.55
USP53-208ENST00000514305 LIMD2Q9BT23 127 aa11.63□□□□□ -0.55
USP53-208ENST00000514305 GTF2H5Q6ZYL4 71 aa11.62□□□□□ -0.55
USP53-208ENST00000514305 KRTAP9-3Q9BYQ3 159 aa11.61□□□□□ -0.55
USP53-208ENST00000514305 JMJD7-PLA2G4BH0Y9G9 81 aa11.6□□□□□ -0.55
USP53-208ENST00000514305 H3BT86 120 aa11.6□□□□□ -0.55
USP53-208ENST00000514305 RBM3P98179 157 aaKnown RBP11.59□□□□□ -0.55
USP53-208ENST00000514305 IGFL1Q6UW32 110 aa11.59□□□□□ -0.55
USP53-208ENST00000514305 HRCT1Q6UXD1 115 aa11.58□□□□□ -0.56
USP53-208ENST00000514305 DSCR8Q96T75 97 aa11.57□□□□□ -0.56
USP53-208ENST00000514305 K7EP34 96 aa11.56□□□□□ -0.56
USP53-208ENST00000514305 TEN1Q86WV5 123 aa11.55□□□□□ -0.56
USP53-208ENST00000514305 C21orf62-AS1Q17RA5 79 aa11.54□□□□□ -0.56
USP53-208ENST00000514305 Q6Q795 121 aa11.52□□□□□ -0.57
USP53-208ENST00000514305 PDE6GP18545 87 aa11.51□□□□□ -0.57
USP53-208ENST00000514305 Q5XG85 94 aa11.51□□□□□ -0.57
USP53-208ENST00000514305 TRBV7-7A0A0K0K1E9 115 aa11.5□□□□□ -0.57
USP53-208ENST00000514305 A0A1B0GV72 72 aa11.5□□□□□ -0.57
USP53-208ENST00000514305 SS18L2Q9UHA2 77 aa11.49□□□□□ -0.57
USP53-208ENST00000514305 A0A0G2JQZ4 141 aa11.48□□□□□ -0.57
USP53-208ENST00000514305 TRBV7-4A0A0J9YYF1 115 aa11.47□□□□□ -0.57
USP53-208ENST00000514305 CCKP06307 115 aa11.46□□□□□ -0.57
USP53-208ENST00000514305 FP248Q71RG6 208 aaPredicted RBP11.46□□□□□ -0.57
USP53-208ENST00000514305 A0A0U1RQV1 116 aa11.45□□□□□ -0.58
USP53-208ENST00000514305 F8W1H4 67 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms