RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 NBDYA0A0U1RRE5 68 aa4.95□□□□□ -1.62
CLCN3-209ENST00000513761 CD164Q04900 197 aa4.95□□□□□ -1.62
CLCN3-209ENST00000513761 ZFHX4Q86UP3 3567 aa4.95□□□□□ -1.62
CLCN3-209ENST00000513761 LINC00313P59037 77 aa4.94□□□□□ -1.62
CLCN3-209ENST00000513761 SPRR4Q96PI1 79 aa4.94□□□□□ -1.62
CLCN3-209ENST00000513761 KTN1-AS1Q86SY8 53 aa4.94□□□□□ -1.62
CLCN3-209ENST00000513761 ASPMQ8IZT6 3477 aa4.94□□□□□ -1.62
CLCN3-209ENST00000513761 RTL8CO15255 209 aa4.93□□□□□ -1.62
CLCN3-209ENST00000513761 SPANXA2-OT1Q8N9U9 137 aa4.93□□□□□ -1.62
CLCN3-209ENST00000513761 DMXL1Q9Y485 3027 aa4.93□□□□□ -1.62
CLCN3-209ENST00000513761 TNRC18O15417 2968 aaPredicted RBP4.93□□□□□ -1.62
CLCN3-209ENST00000513761 A0A1B0GVX0 72 aa4.93□□□□□ -1.62
CLCN3-209ENST00000513761 C8orf87E5RJ46 101 aa4.93□□□□□ -1.62
CLCN3-209ENST00000513761 IGLV5-37A0A075B6J1 123 aa4.91□□□□□ -1.62
CLCN3-209ENST00000513761 FLNCQ14315 2725 aa4.91□□□□□ -1.62
CLCN3-209ENST00000513761 HELZ2Q9BYK8 2649 aaKnown RBP4.91□□□□□ -1.62
CLCN3-209ENST00000513761 SETXQ7Z333 2677 aaKnown RBP4.9□□□□□ -1.62
CLCN3-209ENST00000513761 K7EIL1 84 aa4.89□□□□□ -1.63
CLCN3-209ENST00000513761 UBR5O95071 2799 aaPredicted RBP4.89□□□□□ -1.63
CLCN3-209ENST00000513761 PRR26Q8N8Z3 221 aa4.89□□□□□ -1.63
CLCN3-209ENST00000513761 FAM229AH3BQW9 127 aa4.88□□□□□ -1.63
CLCN3-209ENST00000513761 C9orf163Q8N9P6 203 aa4.88□□□□□ -1.63
CLCN3-209ENST00000513761 CNBPP62633 177 aaKnown RBP4.88□□□□□ -1.63
CLCN3-209ENST00000513761 IGSF10Q6WRI0 2623 aa4.88□□□□□ -1.63
CLCN3-209ENST00000513761 CDC42SE1Q9NRR8 79 aa4.88□□□□□ -1.63
CLCN3-209ENST00000513761 UQCR11O14957 56 aa4.87□□□□□ -1.63
CLCN3-209ENST00000513761 NOTCH1P46531 2555 aa4.87□□□□□ -1.63
CLCN3-209ENST00000513761 Q8N9P0 234 aaPredicted RBP4.87□□□□□ -1.63
CLCN3-209ENST00000513761 MIR22HGQ0VDD5 57 aa4.86□□□□□ -1.63
CLCN3-209ENST00000513761 Q96NJ1 140 aa4.86□□□□□ -1.63
CLCN3-209ENST00000513761 SPRR1AP35321 89 aa4.86□□□□□ -1.63
CLCN3-209ENST00000513761 ZNF861PO60384 105 aa4.86□□□□□ -1.63
CLCN3-209ENST00000513761 ZANQ9Y493 2812 aa4.85□□□□□ -1.63
CLCN3-209ENST00000513761 Q5VV11 94 aa4.85□□□□□ -1.63
CLCN3-209ENST00000513761 IGLV7-46A0A075B6I9 117 aa4.85□□□□□ -1.63
CLCN3-209ENST00000513761 PSORS1C2Q9UIG4 136 aa4.84□□□□□ -1.63
CLCN3-209ENST00000513761 KRTAP26-1Q6PEX3 210 aa4.84□□□□□ -1.63
CLCN3-209ENST00000513761 LCA10Q71F78 164 aa4.84□□□□□ -1.63
CLCN3-209ENST00000513761 TEP1Q99973 2627 aaKnown RBP4.84□□□□□ -1.63
CLCN3-209ENST00000513761 RELNP78509 3460 aa4.84□□□□□ -1.64
CLCN3-209ENST00000513761 HRNRQ86YZ3 2850 aaPredicted RBP4.84□□□□□ -1.64
CLCN3-209ENST00000513761 CSMD1Q96PZ7 3565 aa4.83□□□□□ -1.64
CLCN3-209ENST00000513761 RBM12B-AS1Q9P1G2 102 aa4.83□□□□□ -1.64
CLCN3-209ENST00000513761 Q75L30 129 aa4.83□□□□□ -1.64
CLCN3-209ENST00000513761 TYMSOSQ8TAI1 123 aa4.83□□□□□ -1.64
CLCN3-209ENST00000513761 DMDP11532 3685 aa4.83□□□□□ -1.64
CLCN3-209ENST00000513761 MMP24-AS1A0A0U1RRL7 71 aa4.82□□□□□ -1.64
CLCN3-209ENST00000513761 LAMA5O15230 3695 aa4.82□□□□□ -1.64
CLCN3-209ENST00000513761 COL6A5A8TX70 2615 aa4.82□□□□□ -1.64
CLCN3-209ENST00000513761 BAHCC1Q9P281 2608 aa4.82□□□□□ -1.64
CLCN3-209ENST00000513761 A0A087WTM6 91 aa4.81□□□□□ -1.64
CLCN3-209ENST00000513761 NBEAL1Q6ZS30 2694 aa4.81□□□□□ -1.64
CLCN3-209ENST00000513761 UTP20O75691 2785 aaKnown RBP4.81□□□□□ -1.64
CLCN3-209ENST00000513761 TNP2Q05952 138 aa4.8□□□□□ -1.64
CLCN3-209ENST00000513761 SMG1Q96Q15 3661 aaKnown RBP4.8□□□□□ -1.64
CLCN3-209ENST00000513761 LINC00472Q9H8W2 130 aa4.79□□□□□ -1.64
CLCN3-209ENST00000513761 SSBP3-AS1Q7Z2R9 100 aa4.79□□□□□ -1.64
CLCN3-209ENST00000513761 APLNQ9ULZ1 77 aa4.79□□□□□ -1.64
CLCN3-209ENST00000513761 PLA2G1BP04054 148 aaKnown RBP4.79□□□□□ -1.64
CLCN3-209ENST00000513761 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.78□□□□□ -1.64
CLCN3-209ENST00000513761 CELSR2Q9HCU4 2923 aa4.78□□□□□ -1.64
CLCN3-209ENST00000513761 LINC01558Q9Y6Z2 57 aa4.78□□□□□ -1.64
CLCN3-209ENST00000513761 FBN2P35556 2912 aa4.78□□□□□ -1.64
CLCN3-209ENST00000513761 IGLV7-43P04211 117 aa4.78□□□□□ -1.64
CLCN3-209ENST00000513761 HRES1P13985 223 aa4.78□□□□□ -1.64
CLCN3-209ENST00000513761 SPINK7P58062 85 aa4.77□□□□□ -1.65
CLCN3-209ENST00000513761 Q8N1X5 172 aa4.77□□□□□ -1.65
CLCN3-209ENST00000513761 PRAC1Q96KF2 57 aa4.77□□□□□ -1.65
CLCN3-209ENST00000513761 MUC3AQ02505 3323 aa4.77□□□□□ -1.65
CLCN3-209ENST00000513761 KRTAP4-16G5E9R7 235 aaPredicted RBP4.76□□□□□ -1.65
CLCN3-209ENST00000513761 APCP25054 2843 aa4.75□□□□□ -1.65
CLCN3-209ENST00000513761 ZCCHC13Q8WW36 166 aaKnown RBP4.75□□□□□ -1.65
CLCN3-209ENST00000513761 STAB1Q9NY15 2570 aa4.75□□□□□ -1.65
CLCN3-209ENST00000513761 KRTAP1-5Q9BYS1 174 aa4.74□□□□□ -1.65
CLCN3-209ENST00000513761 HIVEP1P15822 2718 aa4.74□□□□□ -1.65
CLCN3-209ENST00000513761 C9orf92A6NGG3 77 aa4.74□□□□□ -1.65
CLCN3-209ENST00000513761 NF1P21359 2839 aa4.74□□□□□ -1.65
CLCN3-209ENST00000513761 CRYBG3Q68DQ2 2970 aa4.73□□□□□ -1.65
CLCN3-209ENST00000513761 SPINT4Q6UDR6 99 aa4.73□□□□□ -1.65
CLCN3-209ENST00000513761 SPRR1BP22528 89 aa4.73□□□□□ -1.65
CLCN3-209ENST00000513761 DCHS2Q6V1P9 2916 aa4.72□□□□□ -1.65
CLCN3-209ENST00000513761 KRTAP29-1A8MX34 341 aaPredicted RBP4.72□□□□□ -1.65
CLCN3-209ENST00000513761 NSD1Q96L73 2696 aaPredicted RBP4.71□□□□□ -1.66
CLCN3-209ENST00000513761 SVEP1Q4LDE5 3571 aa4.7□□□□□ -1.66
CLCN3-209ENST00000513761 A8MU10 97 aa4.7□□□□□ -1.66
CLCN3-209ENST00000513761 LINC00304Q8N9R0 145 aa4.69□□□□□ -1.66
CLCN3-209ENST00000513761 ITPR2Q14571 2701 aa4.68□□□□□ -1.66
CLCN3-209ENST00000513761 LINC01554Q52M75 96 aa4.68□□□□□ -1.66
CLCN3-209ENST00000513761 KRTAP7-1Q8IUC3 87 aa4.68□□□□□ -1.66
CLCN3-209ENST00000513761 Q5W150 140 aa4.67□□□□□ -1.66
CLCN3-209ENST00000513761 LCE6AA0A183 80 aa4.67□□□□□ -1.66
CLCN3-209ENST00000513761 SMR3BP02814 79 aaPredicted RBP4.66□□□□□ -1.66
CLCN3-209ENST00000513761 PANO1I0J062 215 aa4.66□□□□□ -1.66
CLCN3-209ENST00000513761 WWC2-AS2Q96NR7 200 aa4.65□□□□□ -1.66
CLCN3-209ENST00000513761 KRTAP11-1Q8IUC1 163 aa4.65□□□□□ -1.66
CLCN3-209ENST00000513761 A0A0D9SG42 100 aa4.65□□□□□ -1.66
CLCN3-209ENST00000513761 STAB2Q8WWQ8 2551 aa4.65□□□□□ -1.66
CLCN3-209ENST00000513761 MXRA5Q9NR99 2828 aa4.65□□□□□ -1.67
CLCN3-209ENST00000513761 CELSR1Q9NYQ6 3014 aa4.64□□□□□ -1.67
CLCN3-209ENST00000513761 NIPBLQ6KC79 2804 aaeCLIP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms