RNA–Protein interactions for RNA: ENST00000510884.5

NUP54-210, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-210ENST00000510884 MUC19Q7Z5P9 8384 aa3.1□□□□□ -1.91
NUP54-210ENST00000510884 P0C880 135 aa3.1□□□□□ -1.91
NUP54-210ENST00000510884 Q8N9L7 120 aa3.1□□□□□ -1.91
NUP54-210ENST00000510884 BIRC6Q9NR09 4857 aa3.1□□□□□ -1.91
NUP54-210ENST00000510884 PLXNB1O43157 2135 aa3.1□□□□□ -1.91
NUP54-210ENST00000510884 GOLGA4Q13439 2230 aaKnown RBP3.09□□□□□ -1.91
NUP54-210ENST00000510884 TENM1Q9UKZ4 2725 aa3.09□□□□□ -1.91
NUP54-210ENST00000510884 IGLV7-43P04211 117 aa3.09□□□□□ -1.91
NUP54-210ENST00000510884 CD52P31358 61 aa3.09□□□□□ -1.91
NUP54-210ENST00000510884 SPINK7P58062 85 aa3.09□□□□□ -1.91
NUP54-210ENST00000510884 SPRR4Q96PI1 79 aa3.09□□□□□ -1.91
NUP54-210ENST00000510884 FREM3P0C091 2139 aa3.08□□□□□ -1.92
NUP54-210ENST00000510884 PI4KAP42356 2102 aa3.08□□□□□ -1.92
NUP54-210ENST00000510884 CRIP1P50238 77 aa3.08□□□□□ -1.92
NUP54-210ENST00000510884 TET2Q6N021 2002 aaPredicted RBP3.08□□□□□ -1.92
NUP54-210ENST00000510884 CACNA1EQ15878 2313 aa3.08□□□□□ -1.92
NUP54-210ENST00000510884 IGKV3-7A0A075B6H7 116 aa3.07□□□□□ -1.92
NUP54-210ENST00000510884 COX7BP24311 80 aa3.07□□□□□ -1.92
NUP54-210ENST00000510884 SMIM11BQ8TCY0 68 aa3.07□□□□□ -1.92
NUP54-210ENST00000510884 BSNQ9UPA5 3926 aa3.07□□□□□ -1.92
NUP54-210ENST00000510884 MED12Q93074 2177 aa3.07□□□□□ -1.92
NUP54-210ENST00000510884 IGLV4-60A0A075B6I1 120 aa3.06□□□□□ -1.92
NUP54-210ENST00000510884 ARHGAP32A7KAX9 2087 aa3.06□□□□□ -1.92
NUP54-210ENST00000510884 SPINK9Q5DT21 86 aa3.06□□□□□ -1.92
NUP54-210ENST00000510884 Q5W150 140 aa3.06□□□□□ -1.92
NUP54-210ENST00000510884 C16orf74Q96GX8 76 aa3.06□□□□□ -1.92
NUP54-210ENST00000510884 ICE1Q9Y2F5 2266 aa3.06□□□□□ -1.92
NUP54-210ENST00000510884 VPS13CQ709C8 3753 aa3.05□□□□□ -1.92
NUP54-210ENST00000510884 DCHS2Q6V1P9 2916 aa3.05□□□□□ -1.92
NUP54-210ENST00000510884 PRRC2CQ9Y520 2896 aaKnown RBP3.05□□□□□ -1.92
NUP54-210ENST00000510884 HYDINQ4G0P3 5121 aa3.05□□□□□ -1.92
NUP54-210ENST00000510884 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.05□□□□□ -1.92
NUP54-210ENST00000510884 RNASE3P12724 160 aaKnown RBP3.05□□□□□ -1.92
NUP54-210ENST00000510884 POLR2KP53803 58 aaKnown RBP3.05□□□□□ -1.92
NUP54-210ENST00000510884 MINOS1-NBL1R4GNA1 71 aa3.05□□□□□ -1.92
NUP54-210ENST00000510884 TACC2O95359 2948 aa3.05□□□□□ -1.92
NUP54-210ENST00000510884 MXRA5Q9NR99 2828 aa3.05□□□□□ -1.92
NUP54-210ENST00000510884 SVILO95425 2214 aa3.04□□□□□ -1.92
NUP54-210ENST00000510884 SHANK1Q9Y566 2161 aa3.04□□□□□ -1.92
NUP54-210ENST00000510884 TRBV6-4A0A1B0GX49 114 aa3.04□□□□□ -1.92
NUP54-210ENST00000510884 Q6ZTI0 123 aa3.04□□□□□ -1.92
NUP54-210ENST00000510884 RYR1P21817 5038 aa3.04□□□□□ -1.92
NUP54-210ENST00000510884 VWFP04275 2813 aa3.04□□□□□ -1.92
NUP54-210ENST00000510884 HEATR5BQ9P2D3 2071 aa3.04□□□□□ -1.92
NUP54-210ENST00000510884 EPPK1P58107 5090 aaKnown RBP3.03□□□□□ -1.92
NUP54-210ENST00000510884 ANK2Q01484 3957 aa3.03□□□□□ -1.92
NUP54-210ENST00000510884 CACNA1DQ01668 2161 aa3.03□□□□□ -1.92
NUP54-210ENST00000510884 DEFB131BA0A096LNP1 70 aa3.03□□□□□ -1.92
NUP54-210ENST00000510884 A0A1B0GU33 70 aa3.03□□□□□ -1.92
NUP54-210ENST00000510884 H3BRN7 92 aa3.03□□□□□ -1.92
NUP54-210ENST00000510884 KRTAP5-7Q6L8G8 165 aa3.03□□□□□ -1.92
NUP54-210ENST00000510884 C9orf163Q8N9P6 203 aa3.03□□□□□ -1.92
NUP54-210ENST00000510884 ACANP16112 2415 aa3.03□□□□□ -1.92
NUP54-210ENST00000510884 LINC00158P58513 81 aa3.02□□□□□ -1.93
NUP54-210ENST00000510884 ZGRF1Q86YA3 2104 aa3.02□□□□□ -1.93
NUP54-210ENST00000510884 CR1P17927 2039 aa3.02□□□□□ -1.93
NUP54-210ENST00000510884 TRGV1A0A0A0MS02 117 aa3.01□□□□□ -1.93
NUP54-210ENST00000510884 IGKV3OR2-268A0A0C4DH90 116 aa3.01□□□□□ -1.93
NUP54-210ENST00000510884 A0A1B0GU69 56 aa3.01□□□□□ -1.93
NUP54-210ENST00000510884 SPINT4Q6UDR6 99 aa3.01□□□□□ -1.93
NUP54-210ENST00000510884 Q6ZQY7 126 aa3.01□□□□□ -1.93
NUP54-210ENST00000510884 KLK12Q9UKR0 248 aa3.01□□□□□ -1.93
NUP54-210ENST00000510884 ZNF407Q9C0G0 2248 aa3.01□□□□□ -1.93
NUP54-210ENST00000510884 ESPL1Q14674 2120 aa3.01□□□□□ -1.93
NUP54-210ENST00000510884 MED13LQ71F56 2210 aa3□□□□□ -1.93
NUP54-210ENST00000510884 LINC00959A0A1B0GUT2 108 aa3□□□□□ -1.93
NUP54-210ENST00000510884 PATE1Q8WXA2 126 aa3□□□□□ -1.93
NUP54-210ENST00000510884 RNF5Q99942 180 aa3□□□□□ -1.93
NUP54-210ENST00000510884 FREM1Q5H8C1 2179 aa3□□□□□ -1.93
NUP54-210ENST00000510884 DNAJC13O75165 2243 aa2.99□□□□□ -1.93
NUP54-210ENST00000510884 IGKV2-40A0A087WW87 121 aaPredicted RBP2.99□□□□□ -1.93
NUP54-210ENST00000510884 IGKV2D-40P01614 121 aaPredicted RBP2.99□□□□□ -1.93
NUP54-210ENST00000510884 RPL39LQ96EH5 51 aaKnown RBP2.99□□□□□ -1.93
NUP54-210ENST00000510884 IGKV2-28A0A075B6P5 120 aa2.98□□□□□ -1.93
NUP54-210ENST00000510884 IGKV2D-28P01615 120 aa2.98□□□□□ -1.93
NUP54-210ENST00000510884 RPL39P62891 51 aaKnown RBP2.98□□□□□ -1.93
NUP54-210ENST00000510884 LINC00575Q6W349 94 aa2.98□□□□□ -1.93
NUP54-210ENST00000510884 MGAM2Q2M2H8 2515 aa2.97□□□□□ -1.93
NUP54-210ENST00000510884 ZNF469Q96JG9 3925 aaPredicted RBP2.97□□□□□ -1.93
NUP54-210ENST00000510884 SPRR5A0A1B0GTR4 108 aa2.97□□□□□ -1.93
NUP54-210ENST00000510884 Q8IZM0 81 aa2.97□□□□□ -1.93
NUP54-210ENST00000510884 TMEM167AQ8TBQ9 72 aa2.97□□□□□ -1.93
NUP54-210ENST00000510884 WNK1Q9H4A3 2382 aa2.96□□□□□ -1.94
NUP54-210ENST00000510884 LINC00315P59091 139 aa2.95□□□□□ -1.94
NUP54-210ENST00000510884 ST20-AS1Q8NBB2 130 aa2.95□□□□□ -1.94
NUP54-210ENST00000510884 MALRD1Q5VYJ5 2156 aa2.95□□□□□ -1.94
NUP54-210ENST00000510884 TNCP24821 2201 aa2.95□□□□□ -1.94
NUP54-210ENST00000510884 SDK2Q58EX2 2172 aa2.94□□□□□ -1.94
NUP54-210ENST00000510884 IGKV2D-24A0A075B6R9 120 aa2.94□□□□□ -1.94
NUP54-210ENST00000510884 A0A087WTM6 91 aa2.94□□□□□ -1.94
NUP54-210ENST00000510884 DEFB116Q30KQ4 102 aa2.94□□□□□ -1.94
NUP54-210ENST00000510884 TP53AIP1Q9HCN2 124 aa2.94□□□□□ -1.94
NUP54-210ENST00000510884 PSORS1C2Q9UIG4 136 aa2.94□□□□□ -1.94
NUP54-210ENST00000510884 DOCK10Q96BY6 2186 aa2.93□□□□□ -1.94
NUP54-210ENST00000510884 RPL37AP61513 92 aaKnown RBP2.93□□□□□ -1.94
NUP54-210ENST00000510884 LINC00472Q9H8W2 130 aa2.93□□□□□ -1.94
NUP54-210ENST00000510884 CDKN2A-AS1Q9UH64 79 aa2.93□□□□□ -1.94
NUP54-210ENST00000510884 MAP1AP78559 2803 aaPredicted RBP2.92□□□□□ -1.94
NUP54-210ENST00000510884 SVEP1Q4LDE5 3571 aa2.92□□□□□ -1.94
NUP54-210ENST00000510884 CACNA1CQ13936 2221 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms