RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 HIGD2AQ9BW72 106 aa13.25□□□□□ -0.29
UBE2D3-216ENST00000503742 IGLV5-52A0A0A0MRZ9 124 aa13.24□□□□□ -0.29
UBE2D3-216ENST00000503742 Q6ZVQ6 151 aa13.24□□□□□ -0.29
UBE2D3-216ENST00000503742 BCE1O60756 84 aa13.22□□□□□ -0.29
UBE2D3-216ENST00000503742 TMEM258P61165 79 aa13.21□□□□□ -0.29
UBE2D3-216ENST00000503742 KRTAP13-1Q8IUC0 172 aa13.21□□□□□ -0.29
UBE2D3-216ENST00000503742 DNAH11Q96DT5 4516 aa13.2□□□□□ -0.3
UBE2D3-216ENST00000503742 PLAC8Q9NZF1 115 aa13.2□□□□□ -0.3
UBE2D3-216ENST00000503742 UBE2AP49459 152 aa13.2□□□□□ -0.3
UBE2D3-216ENST00000503742 DNAH8Q96JB1 4490 aa13.19□□□□□ -0.3
UBE2D3-216ENST00000503742 J3KT08 172 aa13.19□□□□□ -0.3
UBE2D3-216ENST00000503742 C1orf137Q5JT78 98 aa13.19□□□□□ -0.3
UBE2D3-216ENST00000503742 RPS28P62857 69 aaKnown RBP13.18□□□□□ -0.3
UBE2D3-216ENST00000503742 A0A1W2PNM2 257 aa13.17□□□□□ -0.3
UBE2D3-216ENST00000503742 HYDINQ4G0P3 5121 aa13.17□□□□□ -0.3
UBE2D3-216ENST00000503742 SPRR1BP22528 89 aa13.16□□□□□ -0.3
UBE2D3-216ENST00000503742 DNAH5Q8TE73 4624 aa13.16□□□□□ -0.3
UBE2D3-216ENST00000503742 A0A1B0GW54 56 aa13.15□□□□□ -0.3
UBE2D3-216ENST00000503742 CXCL6P80162 114 aa13.14□□□□□ -0.31
UBE2D3-216ENST00000503742 IGLV8-61A0A075B6I0 122 aa13.13□□□□□ -0.31
UBE2D3-216ENST00000503742 HAMPP81172 84 aa13.13□□□□□ -0.31
UBE2D3-216ENST00000503742 Q8NBF4 154 aa13.13□□□□□ -0.31
UBE2D3-216ENST00000503742 F8WEM9 126 aa13.12□□□□□ -0.31
UBE2D3-216ENST00000503742 SPRR4Q96PI1 79 aa13.11□□□□□ -0.31
UBE2D3-216ENST00000503742 FAT2Q9NYQ8 4349 aa13.11□□□□□ -0.31
UBE2D3-216ENST00000503742 KRTAP10-2P60368 255 aa13.11□□□□□ -0.31
UBE2D3-216ENST00000503742 CYSTM1Q9H1C7 97 aa13.09□□□□□ -0.31
UBE2D3-216ENST00000503742 PSORS1C2Q9UIG4 136 aa13.09□□□□□ -0.31
UBE2D3-216ENST00000503742 SRRM2Q9UQ35 2752 aaKnown RBP13.07□□□□□ -0.32
UBE2D3-216ENST00000503742 IGFL1Q6UW32 110 aa13.07□□□□□ -0.32
UBE2D3-216ENST00000503742 NREPQ16612 68 aa13.07□□□□□ -0.32
UBE2D3-216ENST00000503742 PKD1P98161 4303 aa13.06□□□□□ -0.32
UBE2D3-216ENST00000503742 TRAV7A0A075B6U4 112 aa13.05□□□□□ -0.32
UBE2D3-216ENST00000503742 SCXQ7RTU7 201 aa13.03□□□□□ -0.32
UBE2D3-216ENST00000503742 A0A0G2JQZ4 141 aa13.02□□□□□ -0.32
UBE2D3-216ENST00000503742 SACSQ9NZJ4 4579 aa13.02□□□□□ -0.33
UBE2D3-216ENST00000503742 FAM30AQ9NZY2 134 aa13.01□□□□□ -0.33
UBE2D3-216ENST00000503742 ZNF861PO60384 105 aa12.98□□□□□ -0.33
UBE2D3-216ENST00000503742 LINC00483Q53H64 154 aa12.97□□□□□ -0.33
UBE2D3-216ENST00000503742 C20orf197Q8N268 126 aa12.97□□□□□ -0.33
UBE2D3-216ENST00000503742 Q6ZSA8 131 aa12.96□□□□□ -0.33
UBE2D3-216ENST00000503742 CIRBP-AS1Q8TBR5 109 aa12.96□□□□□ -0.33
UBE2D3-216ENST00000503742 BPY2O14599 106 aa12.96□□□□□ -0.34
UBE2D3-216ENST00000503742 KLKP1Q107X0 134 aa12.94□□□□□ -0.34
UBE2D3-216ENST00000503742 KRTAP10-1P60331 282 aa12.94□□□□□ -0.34
UBE2D3-216ENST00000503742 ZNF706Q9Y5V0 76 aaPredicted RBP12.93□□□□□ -0.34
UBE2D3-216ENST00000503742 IGKV4-1P06312 121 aa12.91□□□□□ -0.34
UBE2D3-216ENST00000503742 IGLV7-43P04211 117 aa12.9□□□□□ -0.34
UBE2D3-216ENST00000503742 Q8N9L7 120 aa12.9□□□□□ -0.34
UBE2D3-216ENST00000503742 A0A087WSZ3 146 aa12.89□□□□□ -0.35
UBE2D3-216ENST00000503742 FAM236DA0A1B0GTK5 79 aa12.88□□□□□ -0.35
UBE2D3-216ENST00000503742 FAM236CP0DP71 79 aa12.88□□□□□ -0.35
UBE2D3-216ENST00000503742 H7BZZ5 65 aa12.87□□□□□ -0.35
UBE2D3-216ENST00000503742 NDUFC1O43677 76 aa12.87□□□□□ -0.35
UBE2D3-216ENST00000503742 LCE6AA0A183 80 aa12.85□□□□□ -0.35
UBE2D3-216ENST00000503742 DSCR10P59022 87 aa12.84□□□□□ -0.35
UBE2D3-216ENST00000503742 IGLV9-49A0A0B4J1Y8 123 aa12.83□□□□□ -0.35
UBE2D3-216ENST00000503742 RPL37AP61513 92 aaKnown RBP12.83□□□□□ -0.35
UBE2D3-216ENST00000503742 LRP1BQ9NZR2 4599 aa12.82□□□□□ -0.36
UBE2D3-216ENST00000503742 OXTP01178 125 aa12.8□□□□□ -0.36
UBE2D3-216ENST00000503742 ANAPC11Q9NYG5 84 aa12.8□□□□□ -0.36
UBE2D3-216ENST00000503742 SERP1Q9Y6X1 66 aa12.8□□□□□ -0.36
UBE2D3-216ENST00000503742 ATP5EP56381 51 aaPredicted RBP12.78□□□□□ -0.36
UBE2D3-216ENST00000503742 C5orf47Q569G3 176 aa12.78□□□□□ -0.36
UBE2D3-216ENST00000503742 LINC00336Q6ZUF6 198 aa12.76□□□□□ -0.37
UBE2D3-216ENST00000503742 K7EQZ3 153 aa12.75□□□□□ -0.37
UBE2D3-216ENST00000503742 MOBPQ13875 183 aa12.74□□□□□ -0.37
UBE2D3-216ENST00000503742 DEFB116Q30KQ4 102 aa12.74□□□□□ -0.37
UBE2D3-216ENST00000503742 LINC00472Q9H8W2 130 aa12.74□□□□□ -0.37
UBE2D3-216ENST00000503742 SNURFQ9Y675 71 aa12.74□□□□□ -0.37
UBE2D3-216ENST00000503742 PKHD1P08F94 4074 aa12.74□□□□□ -0.37
UBE2D3-216ENST00000503742 TMEM254Q8TBM7 123 aa12.71□□□□□ -0.37
UBE2D3-216ENST00000503742 OCR1Q9BZK8 76 aa12.7□□□□□ -0.38
UBE2D3-216ENST00000503742 VPS13BQ7Z7G8 4022 aa12.69□□□□□ -0.38
UBE2D3-216ENST00000503742 Q5XG85 94 aa12.69□□□□□ -0.38
UBE2D3-216ENST00000503742 RYR2Q92736 4967 aa12.68□□□□□ -0.38
UBE2D3-216ENST00000503742 A0A1B0GVY2 172 aa12.66□□□□□ -0.38
UBE2D3-216ENST00000503742 HRCT1Q6UXD1 115 aa12.65□□□□□ -0.38
UBE2D3-216ENST00000503742 DYNC1H1Q14204 4646 aaKnown RBP12.64□□□□□ -0.39
UBE2D3-216ENST00000503742 Q96NJ1 140 aa12.63□□□□□ -0.39
UBE2D3-216ENST00000503742 A0A0U1RQV1 116 aa12.61□□□□□ -0.39
UBE2D3-216ENST00000503742 A8MWP4 228 aa12.61□□□□□ -0.39
UBE2D3-216ENST00000503742 HCG22E2RYF7 251 aa12.61□□□□□ -0.39
UBE2D3-216ENST00000503742 PRR15Q8IV56 129 aa12.6□□□□□ -0.39
UBE2D3-216ENST00000503742 SMIM26A0A096LP01 95 aa12.6□□□□□ -0.39
UBE2D3-216ENST00000503742 SSBP3-AS1Q7Z2R9 100 aa12.6□□□□□ -0.39
UBE2D3-216ENST00000503742 C4orf26Q17RF5 130 aa12.59□□□□□ -0.39
UBE2D3-216ENST00000503742 KMT2CQ8NEZ4 4911 aaKnown RBP12.57□□□□□ -0.4
UBE2D3-216ENST00000503742 CD164Q04900 197 aa12.56□□□□□ -0.4
UBE2D3-216ENST00000503742 FAM229BQ4G0N7 80 aa12.56□□□□□ -0.4
UBE2D3-216ENST00000503742 A0A087X002 238 aa12.55□□□□□ -0.4
UBE2D3-216ENST00000503742 KRTAP1-4P0C5Y4 121 aa12.54□□□□□ -0.4
UBE2D3-216ENST00000503742 KRTAP29-1A8MX34 341 aaPredicted RBP12.53□□□□□ -0.4
UBE2D3-216ENST00000503742 KRTAP13-2Q52LG2 175 aa12.53□□□□□ -0.4
UBE2D3-216ENST00000503742 APOBP04114 4563 aaKnown RBP12.51□□□□□ -0.41
UBE2D3-216ENST00000503742 WFDC13Q8IUB5 93 aa12.5□□□□□ -0.41
UBE2D3-216ENST00000503742 NDUFB1O75438 58 aa12.48□□□□□ -0.41
UBE2D3-216ENST00000503742 CASC2Q6XLA1 102 aa12.46□□□□□ -0.41
UBE2D3-216ENST00000503742 MMP24-AS1A0A0U1RRL7 71 aa12.45□□□□□ -0.42
UBE2D3-216ENST00000503742 FP248Q71RG6 208 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms