RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 TENM4Q6N022 2769 aa0.39□□□□□ -2.35
HMGB1P35-201ENST00000503360 IGIPA6NJ69 53 aa0.39□□□□□ -2.35
HMGB1P35-201ENST00000503360 DEFB130BP0DP73 79 aa0.39□□□□□ -2.35
HMGB1P35-201ENST00000503360 DEFB130AP0DP74 79 aa0.39□□□□□ -2.35
HMGB1P35-201ENST00000503360 BPTFQ12830 3046 aa0.38□□□□□ -2.35
HMGB1P35-201ENST00000503360 IAPPP10997 89 aa0.38□□□□□ -2.35
HMGB1P35-201ENST00000503360 MINOS1Q5TGZ0 78 aa0.38□□□□□ -2.35
HMGB1P35-201ENST00000503360 KNL1Q8NG31 2342 aa0.38□□□□□ -2.35
HMGB1P35-201ENST00000503360 KIAA0586Q9BVV6 1533 aa0.38□□□□□ -2.35
HMGB1P35-201ENST00000503360 IGF2RP11717 2491 aa0.38□□□□□ -2.35
HMGB1P35-201ENST00000503360 H0YGX0 51 aa0.37□□□□□ -2.35
HMGB1P35-201ENST00000503360 REV3LO60673 3130 aa0.37□□□□□ -2.35
HMGB1P35-201ENST00000503360 ALMS1Q8TCU4 4167 aa0.37□□□□□ -2.35
HMGB1P35-201ENST00000503360 TNXBP22105 4242 aa0.37□□□□□ -2.35
HMGB1P35-201ENST00000503360 ABCC8Q09428 1581 aa0.36□□□□□ -2.35
HMGB1P35-201ENST00000503360 CDC42BPAQ5VT25 1732 aa0.36□□□□□ -2.35
HMGB1P35-201ENST00000503360 CHD6Q8TD26 2715 aa0.36□□□□□ -2.35
HMGB1P35-201ENST00000503360 SNRPGP15A8MWD9 76 aa0.36□□□□□ -2.35
HMGB1P35-201ENST00000503360 M0R2T5 61 aa0.36□□□□□ -2.35
HMGB1P35-201ENST00000503360 TMEM167BQ9NRX6 74 aa0.36□□□□□ -2.35
HMGB1P35-201ENST00000503360 EFCAB6Q5THR3 1501 aa0.36□□□□□ -2.35
HMGB1P35-201ENST00000503360 MACF1Q9UPN3 7388 aaKnown RBP0.35□□□□□ -2.35
HMGB1P35-201ENST00000503360 CSPG4Q6UVK1 2322 aa0.35□□□□□ -2.35
HMGB1P35-201ENST00000503360 IQGAP1P46940 1657 aa0.35□□□□□ -2.35
HMGB1P35-201ENST00000503360 PLNP26678 52 aa0.35□□□□□ -2.35
HMGB1P35-201ENST00000503360 DEFB135Q30KP9 77 aa0.35□□□□□ -2.35
HMGB1P35-201ENST00000503360 C6orf48Q9UBA6 75 aa0.35□□□□□ -2.35
HMGB1P35-201ENST00000503360 MDN1Q9NU22 5596 aa0.35□□□□□ -2.35
HMGB1P35-201ENST00000503360 VWFP04275 2813 aa0.34□□□□□ -2.35
HMGB1P35-201ENST00000503360 FAT2Q9NYQ8 4349 aa0.34□□□□□ -2.35
HMGB1P35-201ENST00000503360 NCOR1O75376 2440 aa0.34□□□□□ -2.35
HMGB1P35-201ENST00000503360 H0YGG7 62 aa0.34□□□□□ -2.36
HMGB1P35-201ENST00000503360 CMC2Q9NRP2 79 aa0.34□□□□□ -2.36
HMGB1P35-201ENST00000503360 SPTA1P02549 2419 aa0.34□□□□□ -2.36
HMGB1P35-201ENST00000503360 UNC79Q9P2D8 2635 aa0.34□□□□□ -2.36
HMGB1P35-201ENST00000503360 LMO7Q8WWI1 1683 aa0.33□□□□□ -2.36
HMGB1P35-201ENST00000503360 BSNQ9UPA5 3926 aa0.33□□□□□ -2.36
HMGB1P35-201ENST00000503360 PRKDCP78527 4128 aaKnown RBP0.33□□□□□ -2.36
HMGB1P35-201ENST00000503360 WNK2Q9Y3S1 2297 aa0.33□□□□□ -2.36
HMGB1P35-201ENST00000503360 ATRQ13535 2644 aa0.33□□□□□ -2.36
HMGB1P35-201ENST00000503360 RPS27P42677 84 aaKnown RBP0.33□□□□□ -2.36
HMGB1P35-201ENST00000503360 WT1-ASQ06250 92 aa0.33□□□□□ -2.36
HMGB1P35-201ENST00000503360 RPS27LQ71UM5 84 aaKnown RBP0.33□□□□□ -2.36
HMGB1P35-201ENST00000503360 ABCA2Q9BZC7 2435 aa0.33□□□□□ -2.36
HMGB1P35-201ENST00000503360 IQGAP2Q13576 1575 aa0.32□□□□□ -2.36
HMGB1P35-201ENST00000503360 USP24Q9UPU5 2620 aa0.32□□□□□ -2.36
HMGB1P35-201ENST00000503360 H3BUA1 57 aa0.32□□□□□ -2.36
HMGB1P35-201ENST00000503360 KRTAP21-1Q3LI58 79 aa0.32□□□□□ -2.36
HMGB1P35-201ENST00000503360 LINC00308Q8TCZ7 52 aa0.32□□□□□ -2.36
HMGB1P35-201ENST00000503360 FAM208AQ9UK61 1670 aaKnown RBP0.31□□□□□ -2.36
HMGB1P35-201ENST00000503360 PRM1P04553 51 aa0.31□□□□□ -2.36
HMGB1P35-201ENST00000503360 PRLHP81277 87 aa0.31□□□□□ -2.36
HMGB1P35-201ENST00000503360 ZFYVE26Q68DK2 2539 aa0.31□□□□□ -2.36
HMGB1P35-201ENST00000503360 HUWE1Q7Z6Z7 4374 aaKnown RBP0.31□□□□□ -2.36
HMGB1P35-201ENST00000503360 OTOGQ6ZRI0 2925 aa0.31□□□□□ -2.36
HMGB1P35-201ENST00000503360 PDE4DIPQ5VU43 2346 aa0.3□□□□□ -2.36
HMGB1P35-201ENST00000503360 TOP2AP11388 1531 aaKnown RBP0.3□□□□□ -2.36
HMGB1P35-201ENST00000503360 SYNE1Q8NF91 8797 aaKnown RBP0.3□□□□□ -2.36
HMGB1P35-201ENST00000503360 S4R3F8 94 aa0.3□□□□□ -2.36
HMGB1P35-201ENST00000503360 NAV2Q8IVL1 2488 aa0.3□□□□□ -2.36
HMGB1P35-201ENST00000503360 LRP1Q07954 4544 aaKnown RBP0.3□□□□□ -2.36
HMGB1P35-201ENST00000503360 EP300Q09472 2414 aaPredicted RBP0.29□□□□□ -2.36
HMGB1P35-201ENST00000503360 PCNX1Q96RV3 2341 aa0.29□□□□□ -2.36
HMGB1P35-201ENST00000503360 TIMM8BQ9Y5J9 83 aaPredicted RBP0.29□□□□□ -2.36
HMGB1P35-201ENST00000503360 NFAT5O94916 1531 aa0.28□□□□□ -2.36
HMGB1P35-201ENST00000503360 KIF21BO75037 1637 aa0.28□□□□□ -2.36
HMGB1P35-201ENST00000503360 LINC01546A6NGU7 62 aa0.28□□□□□ -2.36
HMGB1P35-201ENST00000503360 DEFB106AQ8N104 65 aa0.28□□□□□ -2.36
HMGB1P35-201ENST00000503360 ABRACLQ9P1F3 81 aa0.28□□□□□ -2.36
HMGB1P35-201ENST00000503360 PTPN13Q12923 2485 aa0.28□□□□□ -2.36
HMGB1P35-201ENST00000503360 CHD8Q9HCK8 2581 aa0.28□□□□□ -2.37
HMGB1P35-201ENST00000503360 PKD1L1Q8TDX9 2849 aa0.28□□□□□ -2.37
HMGB1P35-201ENST00000503360 DSPP15924 2871 aaKnown RBP0.27□□□□□ -2.37
HMGB1P35-201ENST00000503360 TRANK1O15050 2925 aa0.27□□□□□ -2.37
HMGB1P35-201ENST00000503360 SMIM27A0A1W2PRY6 76 aa0.27□□□□□ -2.37
HMGB1P35-201ENST00000503360 SPRR2DP22532 72 aa0.27□□□□□ -2.37
HMGB1P35-201ENST00000503360 MAP1BP46821 2468 aaKnown RBP0.27□□□□□ -2.37
HMGB1P35-201ENST00000503360 ATP7AQ04656 1500 aa0.27□□□□□ -2.37
HMGB1P35-201ENST00000503360 DDX60Q8IY21 1712 aaKnown RBP0.27□□□□□ -2.37
HMGB1P35-201ENST00000503360 MYCBP2O75592 4640 aa0.26□□□□□ -2.37
HMGB1P35-201ENST00000503360 KMT2AQ03164 3969 aa0.26□□□□□ -2.37
HMGB1P35-201ENST00000503360 NCOR2Q9Y618 2525 aa0.25□□□□□ -2.37
HMGB1P35-201ENST00000503360 HIVEP3Q5T1R4 2406 aa0.25□□□□□ -2.37
HMGB1P35-201ENST00000503360 WNK1Q9H4A3 2382 aa0.25□□□□□ -2.37
HMGB1P35-201ENST00000503360 LPAP08519 4548 aa0.25□□□□□ -2.37
HMGB1P35-201ENST00000503360 C9orf92A6NGG3 77 aa0.25□□□□□ -2.37
HMGB1P35-201ENST00000503360 PHGR1C9JFL3 82 aa0.25□□□□□ -2.37
HMGB1P35-201ENST00000503360 NOP10Q9NPE3 64 aaKnown RBP0.25□□□□□ -2.37
HMGB1P35-201ENST00000503360 MAST4O15021 2626 aa0.25□□□□□ -2.37
HMGB1P35-201ENST00000503360 HECTD1Q9ULT8 2610 aa0.25□□□□□ -2.37
HMGB1P35-201ENST00000503360 CEP290O15078 2479 aa0.25□□□□□ -2.37
HMGB1P35-201ENST00000503360 APC2O95996 2303 aa0.25□□□□□ -2.37
HMGB1P35-201ENST00000503360 UBR5O95071 2799 aaPredicted RBP0.24□□□□□ -2.37
HMGB1P35-201ENST00000503360 CACNA1AO00555 2505 aa0.24□□□□□ -2.37
HMGB1P35-201ENST00000503360 CREBBPQ92793 2442 aa0.24□□□□□ -2.37
HMGB1P35-201ENST00000503360 DMBT1Q9UGM3 2413 aaPredicted RBP0.24□□□□□ -2.37
HMGB1P35-201ENST00000503360 TOMM5Q8N4H5 51 aa0.24□□□□□ -2.37
HMGB1P35-201ENST00000503360 AKAP13Q12802 2813 aa0.24□□□□□ -2.37
HMGB1P35-201ENST00000503360 NBASA2RRP1 2371 aa0.23□□□□□ -2.37
HMGB1P35-201ENST00000503360 PRRC2CQ9Y520 2896 aaKnown RBP0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms