RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 A0A087WVE0 104 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 TRBV7-7A0A0K0K1E9 115 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 H0Y9P7 68 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 SPINK7P58062 85 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 ATP5EP2Q5VTU8 51 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 Q6ZRX8 168 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 MRPL34Q9BQ48 92 aaKnown RBP0.36□□□□□ -2.35
VPS50-219ENST00000495039 ANKRD36A6QL64 1941 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 PTPRDP23468 1912 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 HELZP42694 1942 aaKnown RBP0.36□□□□□ -2.35
VPS50-219ENST00000495039 PTPRZ1P23471 2315 aaPredicted RBP0.36□□□□□ -2.35
VPS50-219ENST00000495039 ANK1P16157 1881 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 TANC1Q9C0D5 1861 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 FANCMQ8IYD8 2048 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 IGLV5-48A0A075B6I7 105 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 TRAV22A0A0B4J277 110 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 LCE6AA0A183 80 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 A0A1B0GU69 56 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 C9orf92A6NGG3 77 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 K7EQZ3 153 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 SPRR1BP22528 89 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 SPRR1AP35321 89 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 ATP5EP56381 51 aaPredicted RBP0.35□□□□□ -2.35
VPS50-219ENST00000495039 LINC01600Q96MT4 127 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 SPRR4Q96PI1 79 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 PLAC8Q9NZF1 115 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 KNTC1P50748 2209 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 ASXL3Q9C0F0 2248 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 PI4KAP42356 2102 aa0.35□□□□□ -2.35
VPS50-219ENST00000495039 GOLGA4Q13439 2230 aaKnown RBP0.34□□□□□ -2.35
VPS50-219ENST00000495039 ZNF462Q96JM2 2506 aa0.34□□□□□ -2.35
VPS50-219ENST00000495039 MYO7BQ6PIF6 2116 aa0.34□□□□□ -2.35
VPS50-219ENST00000495039 UQCR11O14957 56 aa0.34□□□□□ -2.36
VPS50-219ENST00000495039 CACNA1EQ15878 2313 aa0.34□□□□□ -2.36
VPS50-219ENST00000495039 COX6B2Q6YFQ2 88 aa0.34□□□□□ -2.36
VPS50-219ENST00000495039 SRCAPQ6ZRS2 3230 aa0.34□□□□□ -2.36
VPS50-219ENST00000495039 CYP4F30PQ9H0H9 118 aa0.34□□□□□ -2.36
VPS50-219ENST00000495039 LINC00472Q9H8W2 130 aa0.34□□□□□ -2.36
VPS50-219ENST00000495039 DOCK11Q5JSL3 2073 aa0.34□□□□□ -2.36
VPS50-219ENST00000495039 MUC22E2RYF6 1773 aaPredicted RBP0.34□□□□□ -2.36
VPS50-219ENST00000495039 APCP25054 2843 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 CACNA1CQ13936 2221 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 USF3Q68DE3 2245 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 A0A0D9SG42 100 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 PHGR1C9JFL3 82 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 M0R2T5 61 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 RPS29P62273 56 aaKnown RBP0.33□□□□□ -2.36
VPS50-219ENST00000495039 ESPL1Q14674 2120 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 Q5VSD8 79 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 CRIPTQ9P021 101 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 LINC01558Q9Y6Z2 57 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 KNL1Q8NG31 2342 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 AHCTF1Q8WYP5 2266 aa0.33□□□□□ -2.36
VPS50-219ENST00000495039 PDE4DIPQ5VU43 2346 aa0.32□□□□□ -2.36
VPS50-219ENST00000495039 FRAS1Q86XX4 4008 aa0.32□□□□□ -2.36
VPS50-219ENST00000495039 MMP24-AS1A0A0U1RRL7 71 aa0.32□□□□□ -2.36
VPS50-219ENST00000495039 H7BZZ5 65 aa0.32□□□□□ -2.36
VPS50-219ENST00000495039 H1FX-AS1Q4G0G2 97 aa0.32□□□□□ -2.36
VPS50-219ENST00000495039 S4R3F8 94 aa0.32□□□□□ -2.36
VPS50-219ENST00000495039 ATG2AQ2TAZ0 1938 aa0.32□□□□□ -2.36
VPS50-219ENST00000495039 NAV3Q8IVL0 2385 aa0.32□□□□□ -2.36
VPS50-219ENST00000495039 DNAJC13O75165 2243 aa0.32□□□□□ -2.36
VPS50-219ENST00000495039 M0QZ58 72 aa0.31□□□□□ -2.36
VPS50-219ENST00000495039 Q5VV11 94 aa0.31□□□□□ -2.36
VPS50-219ENST00000495039 ABCA4P78363 2273 aa0.31□□□□□ -2.36
VPS50-219ENST00000495039 CADP27708 2225 aa0.3□□□□□ -2.36
VPS50-219ENST00000495039 ABCA1O95477 2261 aa0.3□□□□□ -2.36
VPS50-219ENST00000495039 ZDBF2Q9HCK1 2354 aa0.3□□□□□ -2.36
VPS50-219ENST00000495039 NCOR1O75376 2440 aa0.3□□□□□ -2.36
VPS50-219ENST00000495039 EP300Q09472 2414 aaPredicted RBP0.3□□□□□ -2.36
VPS50-219ENST00000495039 TNCP24821 2201 aa0.3□□□□□ -2.36
VPS50-219ENST00000495039 UTRNP46939 3433 aa0.3□□□□□ -2.36
VPS50-219ENST00000495039 EP400Q96L91 3159 aa0.3□□□□□ -2.36
VPS50-219ENST00000495039 PKDREJQ9NTG1 2253 aa0.3□□□□□ -2.36
VPS50-219ENST00000495039 PTPRQQ9UMZ3 2332 aa0.3□□□□□ -2.36
VPS50-219ENST00000495039 NAV2Q8IVL1 2488 aa0.29□□□□□ -2.36
VPS50-219ENST00000495039 MED13LQ71F56 2210 aa0.29□□□□□ -2.36
VPS50-219ENST00000495039 UNC80Q8N2C7 3258 aa0.29□□□□□ -2.36
VPS50-219ENST00000495039 WNK2Q9Y3S1 2297 aa0.29□□□□□ -2.36
VPS50-219ENST00000495039 TNP1P09430 55 aa0.29□□□□□ -2.36
VPS50-219ENST00000495039 AKAP6Q13023 2319 aa0.29□□□□□ -2.36
VPS50-219ENST00000495039 PLCE1Q9P212 2302 aa0.29□□□□□ -2.36
VPS50-219ENST00000495039 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.28□□□□□ -2.36
VPS50-219ENST00000495039 FAM186AA6NE01 2351 aa0.28□□□□□ -2.36
VPS50-219ENST00000495039 CACNA1HO95180 2353 aa0.28□□□□□ -2.36
VPS50-219ENST00000495039 GOLGB1Q14789 3259 aaKnown RBP0.28□□□□□ -2.37
VPS50-219ENST00000495039 DOPEY2Q9Y3R5 2298 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 ASH1LQ9NR48 2969 aaKnown RBP0.27□□□□□ -2.37
VPS50-219ENST00000495039 APC2O95996 2303 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 ACACAQ13085 2346 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 CSPG4Q6UVK1 2322 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 CNOT1A5YKK6 2376 aaKnown RBP0.27□□□□□ -2.37
VPS50-219ENST00000495039 TPRP12270 2363 aaKnown RBP0.27□□□□□ -2.37
VPS50-219ENST00000495039 CREBBPQ92793 2442 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 C5orf42Q9H799 3197 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 RIF1Q5UIP0 2472 aaKnown RBP0.27□□□□□ -2.37
VPS50-219ENST00000495039 SZT2Q5T011 3432 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 DNAH14Q0VDD8 3507 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 USP34Q70CQ2 3546 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 H0YAA0 97 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms