RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 KRTAP4-16G5E9R7 235 aaPredicted RBP7.68□□□□□ -1.18
HDAC6-230ENST00000488543 SPRR1AP35321 89 aa7.68□□□□□ -1.18
HDAC6-230ENST00000488543 DPH3Q96FX2 82 aa7.68□□□□□ -1.18
HDAC6-230ENST00000488543 SNURFQ9Y675 71 aa7.68□□□□□ -1.18
HDAC6-230ENST00000488543 RYR2Q92736 4967 aa7.67□□□□□ -1.18
HDAC6-230ENST00000488543 DNAH11Q96DT5 4516 aa7.67□□□□□ -1.18
HDAC6-230ENST00000488543 PANO1I0J062 215 aa7.66□□□□□ -1.18
HDAC6-230ENST00000488543 TMEM258P61165 79 aa7.66□□□□□ -1.18
HDAC6-230ENST00000488543 C1orf195Q5TG92 126 aa7.66□□□□□ -1.18
HDAC6-230ENST00000488543 KRTAP10-2P60368 255 aa7.66□□□□□ -1.18
HDAC6-230ENST00000488543 PKD1P98161 4303 aa7.64□□□□□ -1.19
HDAC6-230ENST00000488543 BPY2O14599 106 aa7.63□□□□□ -1.19
HDAC6-230ENST00000488543 CD164Q04900 197 aa7.63□□□□□ -1.19
HDAC6-230ENST00000488543 IGLV5-52A0A0A0MRZ9 124 aa7.62□□□□□ -1.19
HDAC6-230ENST00000488543 Q6ZRX8 168 aa7.62□□□□□ -1.19
HDAC6-230ENST00000488543 DNAH5Q8TE73 4624 aa7.62□□□□□ -1.19
HDAC6-230ENST00000488543 ST20-AS1Q8NBB2 130 aa7.62□□□□□ -1.19
HDAC6-230ENST00000488543 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.62□□□□□ -1.19
HDAC6-230ENST00000488543 Q8N377 158 aa7.61□□□□□ -1.19
HDAC6-230ENST00000488543 Q9BRP9 147 aa7.61□□□□□ -1.19
HDAC6-230ENST00000488543 TRAV7A0A075B6U4 112 aa7.61□□□□□ -1.19
HDAC6-230ENST00000488543 ETDCA0A1B0GVM5 59 aa7.61□□□□□ -1.19
HDAC6-230ENST00000488543 PDE6GP18545 87 aa7.61□□□□□ -1.19
HDAC6-230ENST00000488543 CXCL6P80162 114 aa7.61□□□□□ -1.19
HDAC6-230ENST00000488543 REG3GQ6UW15 175 aa7.61□□□□□ -1.19
HDAC6-230ENST00000488543 PHF5AQ7RTV0 110 aaKnown RBP7.61□□□□□ -1.19
HDAC6-230ENST00000488543 KRTAP11-1Q8IUC1 163 aa7.61□□□□□ -1.19
HDAC6-230ENST00000488543 PKHD1P08F94 4074 aa7.6□□□□□ -1.19
HDAC6-230ENST00000488543 RYR3Q15413 4870 aa7.6□□□□□ -1.19
HDAC6-230ENST00000488543 H3BQ85 93 aa7.6□□□□□ -1.19
HDAC6-230ENST00000488543 LINC00474Q9P2X8 69 aa7.6□□□□□ -1.19
HDAC6-230ENST00000488543 SPACA4Q8TDM5 124 aa7.59□□□□□ -1.19
HDAC6-230ENST00000488543 A0A0G2JQZ4 141 aa7.59□□□□□ -1.19
HDAC6-230ENST00000488543 EPM2AB3EWF7 344 aa7.59□□□□□ -1.19
HDAC6-230ENST00000488543 H7BZZ5 65 aa7.59□□□□□ -1.19
HDAC6-230ENST00000488543 DHRS4-AS1Q9P1J3 65 aa7.58□□□□□ -1.2
HDAC6-230ENST00000488543 ERC2-IT1O76042 136 aa7.58□□□□□ -1.2
HDAC6-230ENST00000488543 F8WEM9 126 aa7.57□□□□□ -1.2
HDAC6-230ENST00000488543 IGKV4-1P06312 121 aa7.57□□□□□ -1.2
HDAC6-230ENST00000488543 FAM236DA0A1B0GTK5 79 aa7.56□□□□□ -1.2
HDAC6-230ENST00000488543 FAM236CP0DP71 79 aa7.56□□□□□ -1.2
HDAC6-230ENST00000488543 RPS28P62857 69 aaKnown RBP7.56□□□□□ -1.2
HDAC6-230ENST00000488543 NREPQ16612 68 aa7.56□□□□□ -1.2
HDAC6-230ENST00000488543 FAM30AQ9NZY2 134 aa7.56□□□□□ -1.2
HDAC6-230ENST00000488543 PLA2G1BP04054 148 aaKnown RBP7.54□□□□□ -1.2
HDAC6-230ENST00000488543 UBE2BP63146 152 aa7.54□□□□□ -1.2
HDAC6-230ENST00000488543 DNAH8Q96JB1 4490 aa7.54□□□□□ -1.2
HDAC6-230ENST00000488543 A0A1W2PNM2 257 aa7.54□□□□□ -1.2
HDAC6-230ENST00000488543 KRTAP10-1P60331 282 aa7.53□□□□□ -1.2
HDAC6-230ENST00000488543 PRLHP81277 87 aa7.53□□□□□ -1.2
HDAC6-230ENST00000488543 IGLV5-48A0A075B6I7 105 aa7.53□□□□□ -1.2
HDAC6-230ENST00000488543 Q5XG85 94 aa7.53□□□□□ -1.2
HDAC6-230ENST00000488543 HRCT1Q6UXD1 115 aa7.52□□□□□ -1.21
HDAC6-230ENST00000488543 KLKP1Q107X0 134 aa7.52□□□□□ -1.21
HDAC6-230ENST00000488543 PLAC8Q9NZF1 115 aa7.51□□□□□ -1.21
HDAC6-230ENST00000488543 C1orf137Q5JT78 98 aa7.5□□□□□ -1.21
HDAC6-230ENST00000488543 H0Y9J4 135 aa7.49□□□□□ -1.21
HDAC6-230ENST00000488543 A0A1B0GVY2 172 aa7.49□□□□□ -1.21
HDAC6-230ENST00000488543 TMEM254Q8TBM7 123 aa7.49□□□□□ -1.21
HDAC6-230ENST00000488543 BCE1O60756 84 aa7.48□□□□□ -1.21
HDAC6-230ENST00000488543 DEFB116Q30KQ4 102 aa7.48□□□□□ -1.21
HDAC6-230ENST00000488543 SMIM29Q86T20 159 aa7.48□□□□□ -1.21
HDAC6-230ENST00000488543 KRTAP13-1Q8IUC0 172 aa7.48□□□□□ -1.21
HDAC6-230ENST00000488543 LRP1BQ9NZR2 4599 aa7.48□□□□□ -1.21
HDAC6-230ENST00000488543 CIRBP-AS1Q8TBR5 109 aa7.47□□□□□ -1.21
HDAC6-230ENST00000488543 HIGD2AQ9BW72 106 aa7.47□□□□□ -1.21
HDAC6-230ENST00000488543 OCR1Q9BZK8 76 aa7.46□□□□□ -1.21
HDAC6-230ENST00000488543 DYNC1H1Q14204 4646 aaKnown RBP7.45□□□□□ -1.22
HDAC6-230ENST00000488543 UBE2AP49459 152 aa7.45□□□□□ -1.22
HDAC6-230ENST00000488543 Q6ZSA8 131 aa7.45□□□□□ -1.22
HDAC6-230ENST00000488543 Q8NBF4 154 aa7.44□□□□□ -1.22
HDAC6-230ENST00000488543 SERP1Q9Y6X1 66 aa7.44□□□□□ -1.22
HDAC6-230ENST00000488543 K7EQZ3 153 aa7.43□□□□□ -1.22
HDAC6-230ENST00000488543 DSCR10P59022 87 aa7.42□□□□□ -1.22
HDAC6-230ENST00000488543 PSORS1C2Q9UIG4 136 aa7.42□□□□□ -1.22
HDAC6-230ENST00000488543 Q75L30 129 aa7.42□□□□□ -1.22
HDAC6-230ENST00000488543 SPRR1BP22528 89 aa7.41□□□□□ -1.22
HDAC6-230ENST00000488543 FAM229BQ4G0N7 80 aa7.41□□□□□ -1.22
HDAC6-230ENST00000488543 A0A0U1RQV1 116 aa7.41□□□□□ -1.22
HDAC6-230ENST00000488543 FP248Q71RG6 208 aaPredicted RBP7.41□□□□□ -1.22
HDAC6-230ENST00000488543 PMAIP1Q13794 54 aa7.4□□□□□ -1.22
HDAC6-230ENST00000488543 IGFL1Q6UW32 110 aa7.39□□□□□ -1.23
HDAC6-230ENST00000488543 FAM229AH3BQW9 127 aa7.38□□□□□ -1.23
HDAC6-230ENST00000488543 SPRR4Q96PI1 79 aa7.38□□□□□ -1.23
HDAC6-230ENST00000488543 RPL37AP61513 92 aaKnown RBP7.38□□□□□ -1.23
HDAC6-230ENST00000488543 VPS13BQ7Z7G8 4022 aa7.37□□□□□ -1.23
HDAC6-230ENST00000488543 IGLV8-61A0A075B6I0 122 aa7.37□□□□□ -1.23
HDAC6-230ENST00000488543 A0A087WSZ3 146 aa7.36□□□□□ -1.23
HDAC6-230ENST00000488543 WFDC13Q8IUB5 93 aa7.36□□□□□ -1.23
HDAC6-230ENST00000488543 NDUFC1O43677 76 aa7.35□□□□□ -1.23
HDAC6-230ENST00000488543 APOBP04114 4563 aaKnown RBP7.35□□□□□ -1.23
HDAC6-230ENST00000488543 ZNF861PO60384 105 aa7.34□□□□□ -1.23
HDAC6-230ENST00000488543 PRR4Q16378 134 aa7.34□□□□□ -1.23
HDAC6-230ENST00000488543 MPLKIPQ8TAP9 179 aa7.34□□□□□ -1.23
HDAC6-230ENST00000488543 EPPK1P58107 5090 aaKnown RBP7.34□□□□□ -1.23
HDAC6-230ENST00000488543 SMR3BP02814 79 aaPredicted RBP7.34□□□□□ -1.24
HDAC6-230ENST00000488543 IGLV7-43P04211 117 aa7.33□□□□□ -1.24
HDAC6-230ENST00000488543 LINC00483Q53H64 154 aa7.33□□□□□ -1.24
HDAC6-230ENST00000488543 FAT1Q14517 4588 aa7.31□□□□□ -1.24
HDAC6-230ENST00000488543 SMIM26A0A096LP01 95 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms