RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 VAMP3Q15836 100 aa7.43□□□□□ -1.22
SQSTM1-208ENST00000485412 SCGB1D4Q6XE38 83 aa7.43□□□□□ -1.22
SQSTM1-208ENST00000485412 COX6B2Q6YFQ2 88 aa7.43□□□□□ -1.22
SQSTM1-208ENST00000485412 TIMM17BO60830 172 aa7.42□□□□□ -1.22
SQSTM1-208ENST00000485412 Q1RN00 199 aa7.42□□□□□ -1.22
SQSTM1-208ENST00000485412 OR13C6PQ8NH95 151 aa7.42□□□□□ -1.22
SQSTM1-208ENST00000485412 LINC00308Q8TCZ7 52 aa7.42□□□□□ -1.22
SQSTM1-208ENST00000485412 A6NDN8 102 aa7.41□□□□□ -1.22
SQSTM1-208ENST00000485412 C9orf118A6NHY6 69 aa7.4□□□□□ -1.22
SQSTM1-208ENST00000485412 CEND1Q8N111 149 aa7.4□□□□□ -1.22
SQSTM1-208ENST00000485412 HIST1H4GQ99525 98 aa7.4□□□□□ -1.22
SQSTM1-208ENST00000485412 SPANXCQ9NY87 97 aa7.4□□□□□ -1.22
SQSTM1-208ENST00000485412 KRTAP9-7A8MTY7 169 aa7.39□□□□□ -1.23
SQSTM1-208ENST00000485412 ELOF1P60002 83 aaKnown RBP7.39□□□□□ -1.23
SQSTM1-208ENST00000485412 DEFB105AQ8NG35 78 aa7.39□□□□□ -1.23
SQSTM1-208ENST00000485412 DHRS4-AS1Q9P1J3 65 aa7.39□□□□□ -1.23
SQSTM1-208ENST00000485412 LAMTOR3Q9UHA4 124 aa7.39□□□□□ -1.23
SQSTM1-208ENST00000485412 FXYD2P54710 66 aa7.38□□□□□ -1.23
SQSTM1-208ENST00000485412 C6orf99Q4VX62 202 aa7.38□□□□□ -1.23
SQSTM1-208ENST00000485412 SPANXDQ9BXN6 97 aa7.38□□□□□ -1.23
SQSTM1-208ENST00000485412 COX7BP24311 80 aa7.37□□□□□ -1.23
SQSTM1-208ENST00000485412 C1orf195Q5TG92 126 aa7.37□□□□□ -1.23
SQSTM1-208ENST00000485412 SMIM29Q86T20 159 aa7.37□□□□□ -1.23
SQSTM1-208ENST00000485412 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.36□□□□□ -1.23
SQSTM1-208ENST00000485412 IFITM1P13164 125 aa7.36□□□□□ -1.23
SQSTM1-208ENST00000485412 H3BUT2 72 aa7.35□□□□□ -1.23
SQSTM1-208ENST00000485412 K7EP34 96 aa7.35□□□□□ -1.23
SQSTM1-208ENST00000485412 NAA38Q9BRA0 125 aaKnown RBP7.35□□□□□ -1.23
SQSTM1-208ENST00000485412 TMEM238LA0A1B0GVL6 79 aa7.34□□□□□ -1.23
SQSTM1-208ENST00000485412 A0A1B0GWB2 263 aa7.34□□□□□ -1.23
SQSTM1-208ENST00000485412 A0A1W2PPM0 123 aa7.34□□□□□ -1.23
SQSTM1-208ENST00000485412 A6NJY4 79 aa7.34□□□□□ -1.23
SQSTM1-208ENST00000485412 RPL37P61927 97 aaKnown RBP7.34□□□□□ -1.23
SQSTM1-208ENST00000485412 CD164Q04900 197 aa7.34□□□□□ -1.23
SQSTM1-208ENST00000485412 RAB37Q96AX2 223 aa7.34□□□□□ -1.23
SQSTM1-208ENST00000485412 CBY1Q9Y3M2 126 aa7.34□□□□□ -1.23
SQSTM1-208ENST00000485412 K7ERJ3 54 aa7.33□□□□□ -1.24
SQSTM1-208ENST00000485412 MUSTN1Q8IVN3 82 aa7.33□□□□□ -1.24
SQSTM1-208ENST00000485412 COPS9Q8WXC6 57 aa7.33□□□□□ -1.24
SQSTM1-208ENST00000485412 TEX49A0A1B0GTD5 131 aa7.32□□□□□ -1.24
SQSTM1-208ENST00000485412 GTF2H5Q6ZYL4 71 aa7.32□□□□□ -1.24
SQSTM1-208ENST00000485412 Q5XG85 94 aa7.31□□□□□ -1.24
SQSTM1-208ENST00000485412 NHP2Q9NX24 153 aaKnown RBP7.31□□□□□ -1.24
SQSTM1-208ENST00000485412 SPCS1Q9Y6A9 102 aa7.3□□□□□ -1.24
SQSTM1-208ENST00000485412 IGLV5-48A0A075B6I7 105 aa7.29□□□□□ -1.24
SQSTM1-208ENST00000485412 A4D1N5 150 aa7.29□□□□□ -1.24
SQSTM1-208ENST00000485412 FABP2P12104 132 aa7.29□□□□□ -1.24
SQSTM1-208ENST00000485412 OCIAD2Q56VL3 154 aa7.29□□□□□ -1.24
SQSTM1-208ENST00000485412 A0A0B4J2C4 111 aa7.28□□□□□ -1.24
SQSTM1-208ENST00000485412 CFC1P0CG37 223 aa7.28□□□□□ -1.24
SQSTM1-208ENST00000485412 Q6Q795 121 aa7.26□□□□□ -1.25
SQSTM1-208ENST00000485412 TRBV7-6A0A0J9YX20 115 aa7.25□□□□□ -1.25
SQSTM1-208ENST00000485412 PRO1854Q9UHT4 67 aa7.25□□□□□ -1.25
SQSTM1-208ENST00000485412 SSPOA2VEC9 5147 aa7.24□□□□□ -1.25
SQSTM1-208ENST00000485412 USH2AO75445 5202 aa7.24□□□□□ -1.25
SQSTM1-208ENST00000485412 K7ERU9 68 aa7.22□□□□□ -1.25
SQSTM1-208ENST00000485412 SMIM11BQ8TCY0 68 aa7.21□□□□□ -1.26
SQSTM1-208ENST00000485412 PRO0461Q9UI25 63 aa7.21□□□□□ -1.26
SQSTM1-208ENST00000485412 TRAV13-2A0A0B4J235 113 aa7.19□□□□□ -1.26
SQSTM1-208ENST00000485412 TCL1BO95988 128 aa7.18□□□□□ -1.26
SQSTM1-208ENST00000485412 VPS25Q9BRG1 176 aa7.18□□□□□ -1.26
SQSTM1-208ENST00000485412 H3BMG7 143 aa7.17□□□□□ -1.26
SQSTM1-208ENST00000485412 OBSCN-AS1Q96MR7 158 aa7.17□□□□□ -1.26
SQSTM1-208ENST00000485412 F8W1H4 67 aa7.16□□□□□ -1.26
SQSTM1-208ENST00000485412 PCP4P48539 62 aa7.15□□□□□ -1.26
SQSTM1-208ENST00000485412 LYRM7Q5U5X0 104 aa7.15□□□□□ -1.26
SQSTM1-208ENST00000485412 IGFL1Q6UW32 110 aa7.15□□□□□ -1.26
SQSTM1-208ENST00000485412 SMCPP49901 116 aaPredicted RBP7.14□□□□□ -1.27
SQSTM1-208ENST00000485412 ATP11AUNQ6ZP68 121 aa7.14□□□□□ -1.27
SQSTM1-208ENST00000485412 TRBV20-1A0A075B6N2 111 aa7.13□□□□□ -1.27
SQSTM1-208ENST00000485412 TRBV7-7A0A0K0K1E9 115 aa7.13□□□□□ -1.27
SQSTM1-208ENST00000485412 C21orf62-AS1Q17RA5 79 aa7.13□□□□□ -1.27
SQSTM1-208ENST00000485412 LINC00575Q6W349 94 aa7.13□□□□□ -1.27
SQSTM1-208ENST00000485412 Q6ZQY7 126 aa7.13□□□□□ -1.27
SQSTM1-208ENST00000485412 MTURNQ8N3F0 131 aa7.13□□□□□ -1.27
SQSTM1-208ENST00000485412 F8WEM9 126 aa7.12□□□□□ -1.27
SQSTM1-208ENST00000485412 COX6CP09669 75 aa7.12□□□□□ -1.27
SQSTM1-208ENST00000485412 PSMB2P49721 201 aa7.12□□□□□ -1.27
SQSTM1-208ENST00000485412 Q75L30 129 aa7.12□□□□□ -1.27
SQSTM1-208ENST00000485412 KRTAP9-8Q9BYQ0 159 aa7.12□□□□□ -1.27
SQSTM1-208ENST00000485412 FCGBPQ9Y6R7 5405 aaPredicted RBP7.11□□□□□ -1.27
SQSTM1-208ENST00000485412 TRIAP1O43715 76 aa7.11□□□□□ -1.27
SQSTM1-208ENST00000485412 SCGB1C2P0DMR2 95 aa7.11□□□□□ -1.27
SQSTM1-208ENST00000485412 CLEC2BQ92478 149 aa7.11□□□□□ -1.27
SQSTM1-208ENST00000485412 ETDBQ3ZM63 59 aa7.1□□□□□ -1.27
SQSTM1-208ENST00000485412 H0YGX0 51 aa7.08□□□□□ -1.28
SQSTM1-208ENST00000485412 Q6JHZ5 121 aa7.08□□□□□ -1.28
SQSTM1-208ENST00000485412 hADV29S1A0JD25 119 aa7.07□□□□□ -1.28
SQSTM1-208ENST00000485412 ATXN8Q156A1 80 aa7.07□□□□□ -1.28
SQSTM1-208ENST00000485412 Q96NJ1 140 aa7.06□□□□□ -1.28
SQSTM1-208ENST00000485412 J3QR89 54 aa7.05□□□□□ -1.28
SQSTM1-208ENST00000485412 LST1O00453 97 aa7.05□□□□□ -1.28
SQSTM1-208ENST00000485412 KRTAP19-1Q8IUB9 90 aa7.05□□□□□ -1.28
SQSTM1-208ENST00000485412 TEN1Q86WV5 123 aa7.04□□□□□ -1.28
SQSTM1-208ENST00000485412 TRACP01848 142 aa7.03□□□□□ -1.28
SQSTM1-208ENST00000485412 PPDPFLQ8WWR9 84 aa7.03□□□□□ -1.28
SQSTM1-208ENST00000485412 A0A1B0GX51 115 aa7.02□□□□□ -1.29
SQSTM1-208ENST00000485412 ANKRD29Q8N6D5 301 aa7.02□□□□□ -1.29
SQSTM1-208ENST00000485412 C20orf166-AS1Q96NR2 134 aa7.02□□□□□ -1.29
SQSTM1-208ENST00000485412 C9JAW5 83 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms