RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 A0A0D9SFI3 127 aa1.09□□□□□ -2.24
CCDC88A-208ENST00000444458 A0A1B0GU69 56 aa1.09□□□□□ -2.24
CCDC88A-208ENST00000444458 SFTA3P0C7M3 94 aa1.09□□□□□ -2.24
CCDC88A-208ENST00000444458 COX8AP10176 69 aa1.09□□□□□ -2.24
CCDC88A-208ENST00000444458 C10orf99Q6UWK7 81 aa1.09□□□□□ -2.24
CCDC88A-208ENST00000444458 Q5VSD8 79 aa1.09□□□□□ -2.24
CCDC88A-208ENST00000444458 GAFA1Q96PS6 74 aa1.09□□□□□ -2.24
CCDC88A-208ENST00000444458 TRRAPQ9Y4A5 3859 aa1.08□□□□□ -2.24
CCDC88A-208ENST00000444458 SSBP3-AS1Q7Z2R9 100 aa1.08□□□□□ -2.24
CCDC88A-208ENST00000444458 ATXN8Q156A1 80 aa1.08□□□□□ -2.24
CCDC88A-208ENST00000444458 SPRR4Q96PI1 79 aa1.08□□□□□ -2.24
CCDC88A-208ENST00000444458 KRTAP4-3Q9BYR4 195 aa1.08□□□□□ -2.24
CCDC88A-208ENST00000444458 NCOA6Q14686 2063 aaPredicted RBP1.08□□□□□ -2.24
CCDC88A-208ENST00000444458 KRTAP5-7Q6L8G8 165 aa1.08□□□□□ -2.24
CCDC88A-208ENST00000444458 ZANQ9Y493 2812 aa1.08□□□□□ -2.24
CCDC88A-208ENST00000444458 UTRNP46939 3433 aa1.08□□□□□ -2.24
CCDC88A-208ENST00000444458 FBN1P35555 2871 aaKnown RBP1.08□□□□□ -2.24
CCDC88A-208ENST00000444458 PKD1L1Q8TDX9 2849 aa1.07□□□□□ -2.24
CCDC88A-208ENST00000444458 KRTAP10-3P60369 221 aa1.07□□□□□ -2.24
CCDC88A-208ENST00000444458 UBE2DNLQ8IWF7 75 aa1.07□□□□□ -2.24
CCDC88A-208ENST00000444458 AKAP6Q13023 2319 aa1.07□□□□□ -2.24
CCDC88A-208ENST00000444458 TNRC6BQ9UPQ9 1833 aaKnown RBP1.07□□□□□ -2.24
CCDC88A-208ENST00000444458 GVQW2A0A096LPI5 108 aaPredicted RBP1.07□□□□□ -2.24
CCDC88A-208ENST00000444458 KRTAP10-8P60410 259 aa1.07□□□□□ -2.24
CCDC88A-208ENST00000444458 PCNTO95613 3336 aa1.07□□□□□ -2.24
CCDC88A-208ENST00000444458 KRTAP12-1P59990 96 aa1.07□□□□□ -2.24
CCDC88A-208ENST00000444458 HECTD4Q9Y4D8 3996 aa1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 SSPOA2VEC9 5147 aa1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 SPINK7P58062 85 aa1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 PCOTHQ58A44 107 aa1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 SPATA8Q6RVD6 105 aa1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 KRTAP10-1P60331 282 aa1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 RPL38P63173 70 aaKnown RBP1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 FAM103A1Q9BTL3 118 aaKnown RBP1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 GOLGA4Q13439 2230 aaKnown RBP1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 REV3LO60673 3130 aa1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 TRAV21A0A0B4J279 112 aa1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 C3orf79P0CE67 100 aa1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 LCE3EQ5T5B0 92 aa1.06□□□□□ -2.24
CCDC88A-208ENST00000444458 ZNF469Q96JG9 3925 aaPredicted RBP1.05□□□□□ -2.24
CCDC88A-208ENST00000444458 KRTAP13-3Q3SY46 172 aa1.05□□□□□ -2.24
CCDC88A-208ENST00000444458 SPTBN5Q9NRC6 3674 aaKnown RBP1.05□□□□□ -2.24
CCDC88A-208ENST00000444458 HMGA1P17096 107 aaKnown RBP1.05□□□□□ -2.24
CCDC88A-208ENST00000444458 RPL37P61927 97 aaKnown RBP1.05□□□□□ -2.24
CCDC88A-208ENST00000444458 LINC00472Q9H8W2 130 aa1.05□□□□□ -2.24
CCDC88A-208ENST00000444458 ANKRD36A6QL64 1941 aa1.05□□□□□ -2.24
CCDC88A-208ENST00000444458 A0A096LNT2 108 aa1.05□□□□□ -2.24
CCDC88A-208ENST00000444458 IFI6P09912 130 aa1.05□□□□□ -2.24
CCDC88A-208ENST00000444458 TRBV7-4A0A0J9YYF1 115 aa1.04□□□□□ -2.24
CCDC88A-208ENST00000444458 NREPQ16612 68 aa1.04□□□□□ -2.24
CCDC88A-208ENST00000444458 DNAH3Q8TD57 4116 aa1.04□□□□□ -2.24
CCDC88A-208ENST00000444458 TENM2Q9NT68 2774 aa1.04□□□□□ -2.24
CCDC88A-208ENST00000444458 G3V318 75 aa1.04□□□□□ -2.24
CCDC88A-208ENST00000444458 CSMD3Q7Z407 3707 aa1.04□□□□□ -2.24
CCDC88A-208ENST00000444458 MXRA5Q9NR99 2828 aa1.04□□□□□ -2.24
CCDC88A-208ENST00000444458 FCGBPQ9Y6R7 5405 aaPredicted RBP1.04□□□□□ -2.24
CCDC88A-208ENST00000444458 DNHD1Q96M86 4753 aa1.03□□□□□ -2.24
CCDC88A-208ENST00000444458 LYNX1P0DP58 116 aa1.03□□□□□ -2.24
CCDC88A-208ENST00000444458 DYNC2H1Q8NCM8 4307 aaKnown RBP1.03□□□□□ -2.24
CCDC88A-208ENST00000444458 HIVEP1P15822 2718 aa1.03□□□□□ -2.24
CCDC88A-208ENST00000444458 FXYD6-FXYD2A0A087WZ82 144 aa1.03□□□□□ -2.24
CCDC88A-208ENST00000444458 FCER1GP30273 86 aa1.02□□□□□ -2.25
CCDC88A-208ENST00000444458 LELP1Q5T871 98 aa1.02□□□□□ -2.25
CCDC88A-208ENST00000444458 UBL5Q9BZL1 73 aa1.02□□□□□ -2.25
CCDC88A-208ENST00000444458 ITPR2Q14571 2701 aa1.02□□□□□ -2.25
CCDC88A-208ENST00000444458 FAT4Q6V0I7 4981 aa1.02□□□□□ -2.25
CCDC88A-208ENST00000444458 COX7BP24311 80 aa1.01□□□□□ -2.25
CCDC88A-208ENST00000444458 KRTAP10-5P60370 271 aa1.01□□□□□ -2.25
CCDC88A-208ENST00000444458 PLAC8Q9NZF1 115 aa1.01□□□□□ -2.25
CCDC88A-208ENST00000444458 AKAP13Q12802 2813 aa1.01□□□□□ -2.25
CCDC88A-208ENST00000444458 SPTY2D1-AS1A0A0U1RR47 76 aa1.01□□□□□ -2.25
CCDC88A-208ENST00000444458 LINC01549A6NIU2 74 aa1.01□□□□□ -2.25
CCDC88A-208ENST00000444458 ANGP03950 147 aaKnown RBP1.01□□□□□ -2.25
CCDC88A-208ENST00000444458 ARL14EPLP0DKL9 152 aa1.01□□□□□ -2.25
CCDC88A-208ENST00000444458 GOLGB1Q14789 3259 aaKnown RBP1.01□□□□□ -2.25
CCDC88A-208ENST00000444458 PIGYQ3MUY2 71 aa1□□□□□ -2.25
CCDC88A-208ENST00000444458 Q6ZSA8 131 aa1□□□□□ -2.25
CCDC88A-208ENST00000444458 CRIPTQ9P021 101 aa1□□□□□ -2.25
CCDC88A-208ENST00000444458 ANK2Q01484 3957 aa1□□□□□ -2.25
CCDC88A-208ENST00000444458 FXYD6Q9H0Q3 95 aa1□□□□□ -2.25
CCDC88A-208ENST00000444458 HYDINQ4G0P3 5121 aa1□□□□□ -2.25
CCDC88A-208ENST00000444458 DNAH1Q9P2D7 4330 aa1□□□□□ -2.25
CCDC88A-208ENST00000444458 DEFB104AQ8WTQ1 72 aa1□□□□□ -2.25
CCDC88A-208ENST00000444458 MUC2Q02817 5179 aa1□□□□□ -2.25
CCDC88A-208ENST00000444458 KRTAP10-10P60014 251 aa0.99□□□□□ -2.25
CCDC88A-208ENST00000444458 ENHOQ6UWT2 76 aa0.99□□□□□ -2.25
CCDC88A-208ENST00000444458 NF1P21359 2839 aa0.99□□□□□ -2.25
CCDC88A-208ENST00000444458 VPS13BQ7Z7G8 4022 aa0.99□□□□□ -2.25
CCDC88A-208ENST00000444458 NDUFA4O00483 81 aa0.99□□□□□ -2.25
CCDC88A-208ENST00000444458 SMR3BP02814 79 aaPredicted RBP0.99□□□□□ -2.25
CCDC88A-208ENST00000444458 CMYA5Q8N3K9 4069 aa0.99□□□□□ -2.25
CCDC88A-208ENST00000444458 I3L3M4 83 aa0.98□□□□□ -2.25
CCDC88A-208ENST00000444458 USMG5Q96IX5 58 aa0.98□□□□□ -2.25
CCDC88A-208ENST00000444458 ALMS1Q8TCU4 4167 aa0.98□□□□□ -2.25
CCDC88A-208ENST00000444458 SPINK9Q5DT21 86 aa0.98□□□□□ -2.25
CCDC88A-208ENST00000444458 SMR3AQ99954 134 aa0.98□□□□□ -2.25
CCDC88A-208ENST00000444458 SZT2Q5T011 3432 aa0.98□□□□□ -2.25
CCDC88A-208ENST00000444458 LRP1BQ9NZR2 4599 aa0.98□□□□□ -2.25
CCDC88A-208ENST00000444458 KMT2CQ8NEZ4 4911 aaKnown RBP0.98□□□□□ -2.25
CCDC88A-208ENST00000444458 VCANP13611 3396 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms