RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 LORP23490 312 aaPredicted RBP7.71□□□□□ -1.18
SDC1-204ENST00000429035 VAMP3Q15836 100 aa7.68□□□□□ -1.18
SDC1-204ENST00000429035 Q6ZQY7 126 aa7.67□□□□□ -1.18
SDC1-204ENST00000429035 Q6Q795 121 aa7.66□□□□□ -1.18
SDC1-204ENST00000429035 FLGP20930 4061 aaPredicted RBP7.66□□□□□ -1.18
SDC1-204ENST00000429035 hADV29S1A0JD25 119 aa7.65□□□□□ -1.18
SDC1-204ENST00000429035 LINC00575Q6W349 94 aa7.65□□□□□ -1.18
SDC1-204ENST00000429035 CLEC2BQ92478 149 aa7.65□□□□□ -1.18
SDC1-204ENST00000429035 TRBV7-7A0A0K0K1E9 115 aa7.64□□□□□ -1.19
SDC1-204ENST00000429035 Q6JHZ5 121 aa7.64□□□□□ -1.19
SDC1-204ENST00000429035 IGFL1Q6UW32 110 aa7.64□□□□□ -1.19
SDC1-204ENST00000429035 OBSCN-AS1Q96MR7 158 aa7.63□□□□□ -1.19
SDC1-204ENST00000429035 ATP11AUNQ6ZP68 121 aa7.61□□□□□ -1.19
SDC1-204ENST00000429035 C12orf57Q99622 126 aa7.61□□□□□ -1.19
SDC1-204ENST00000429035 HSBP1L1C9JCN9 74 aa7.6□□□□□ -1.19
SDC1-204ENST00000429035 SNRPEP62304 92 aaKnown RBP7.6□□□□□ -1.19
SDC1-204ENST00000429035 OCIAD2Q56VL3 154 aa7.59□□□□□ -1.19
SDC1-204ENST00000429035 H3BUT2 72 aa7.58□□□□□ -1.2
SDC1-204ENST00000429035 S100A2P29034 98 aa7.57□□□□□ -1.2
SDC1-204ENST00000429035 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.57□□□□□ -1.2
SDC1-204ENST00000429035 Q75L30 129 aa7.57□□□□□ -1.2
SDC1-204ENST00000429035 SNHG12Q9BXW3 62 aa7.57□□□□□ -1.2
SDC1-204ENST00000429035 LST1O00453 97 aa7.56□□□□□ -1.2
SDC1-204ENST00000429035 BVES-AS1Q5T3Y7 98 aa7.55□□□□□ -1.2
SDC1-204ENST00000429035 HIST3H2BBQ8N257 126 aa7.55□□□□□ -1.2
SDC1-204ENST00000429035 Q96NJ1 140 aa7.55□□□□□ -1.2
SDC1-204ENST00000429035 S100A6P06703 90 aa7.53□□□□□ -1.2
SDC1-204ENST00000429035 HIST1H4GQ99525 98 aa7.53□□□□□ -1.2
SDC1-204ENST00000429035 PPDPFLQ8WWR9 84 aa7.52□□□□□ -1.21
SDC1-204ENST00000429035 HIST1H2BLQ99880 126 aa7.52□□□□□ -1.21
SDC1-204ENST00000429035 SCGB1D1O95968 90 aa7.51□□□□□ -1.21
SDC1-204ENST00000429035 SS18L2Q9UHA2 77 aa7.51□□□□□ -1.21
SDC1-204ENST00000429035 RAB37Q96AX2 223 aa7.47□□□□□ -1.21
SDC1-204ENST00000429035 TRBV20-1A0A075B6N2 111 aa7.46□□□□□ -1.22
SDC1-204ENST00000429035 A0A087WSZ3 146 aa7.46□□□□□ -1.22
SDC1-204ENST00000429035 SNCGO76070 127 aa7.46□□□□□ -1.22
SDC1-204ENST00000429035 C20orf166-AS1Q96NR2 134 aa7.45□□□□□ -1.22
SDC1-204ENST00000429035 SIGMAR1Q99720 223 aa7.45□□□□□ -1.22
SDC1-204ENST00000429035 DSCR10P59022 87 aa7.44□□□□□ -1.22
SDC1-204ENST00000429035 TEN1Q86WV5 123 aa7.44□□□□□ -1.22
SDC1-204ENST00000429035 COX8AP10176 69 aa7.43□□□□□ -1.22
SDC1-204ENST00000429035 NDUFV3P56181 108 aaKnown RBP7.43□□□□□ -1.22
SDC1-204ENST00000429035 A8MUU9 505 aa7.42□□□□□ -1.22
SDC1-204ENST00000429035 CFC1P0CG37 223 aa7.42□□□□□ -1.22
SDC1-204ENST00000429035 FAM218AQ96MZ4 157 aa7.42□□□□□ -1.22
SDC1-204ENST00000429035 FAM236DA0A1B0GTK5 79 aa7.41□□□□□ -1.22
SDC1-204ENST00000429035 FAM236CP0DP71 79 aa7.41□□□□□ -1.22
SDC1-204ENST00000429035 FABP2P12104 132 aa7.4□□□□□ -1.22
SDC1-204ENST00000429035 H0YGX0 51 aa7.39□□□□□ -1.23
SDC1-204ENST00000429035 H3BMG7 143 aa7.39□□□□□ -1.23
SDC1-204ENST00000429035 A0A0B4J2C4 111 aa7.38□□□□□ -1.23
SDC1-204ENST00000429035 A0A1B0GV72 72 aa7.38□□□□□ -1.23
SDC1-204ENST00000429035 C14orf144Q96I85 54 aa7.38□□□□□ -1.23
SDC1-204ENST00000429035 PAM16Q9Y3D7 125 aa7.36□□□□□ -1.23
SDC1-204ENST00000429035 DLEU1O43261 78 aa7.35□□□□□ -1.23
SDC1-204ENST00000429035 GHRHP01286 108 aa7.35□□□□□ -1.23
SDC1-204ENST00000429035 KRTAP9-8Q9BYQ0 159 aa7.35□□□□□ -1.23
SDC1-204ENST00000429035 IGKV4-1P06312 121 aa7.34□□□□□ -1.23
SDC1-204ENST00000429035 SPATA45Q537H7 98 aa7.34□□□□□ -1.23
SDC1-204ENST00000429035 A0A1W2PNM2 257 aa7.33□□□□□ -1.24
SDC1-204ENST00000429035 LINC00313P59037 77 aa7.33□□□□□ -1.24
SDC1-204ENST00000429035 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.32□□□□□ -1.24
SDC1-204ENST00000429035 HIGD1BQ9P298 99 aa7.32□□□□□ -1.24
SDC1-204ENST00000429035 TMEM238LA0A1B0GVL6 79 aa7.31□□□□□ -1.24
SDC1-204ENST00000429035 A0A1B0GX51 115 aa7.31□□□□□ -1.24
SDC1-204ENST00000429035 A6NJY4 79 aa7.31□□□□□ -1.24
SDC1-204ENST00000429035 DNAL4O96015 105 aa7.31□□□□□ -1.24
SDC1-204ENST00000429035 C2orf91Q6ZV80 131 aa7.31□□□□□ -1.24
SDC1-204ENST00000429035 KRTAP9-7A8MTY7 169 aa7.3□□□□□ -1.24
SDC1-204ENST00000429035 TRIAP1O43715 76 aa7.3□□□□□ -1.24
SDC1-204ENST00000429035 PYY3Q5JQD4 70 aa7.3□□□□□ -1.24
SDC1-204ENST00000429035 CEND1Q8N111 149 aa7.3□□□□□ -1.24
SDC1-204ENST00000429035 ANKRD29Q8N6D5 301 aa7.3□□□□□ -1.24
SDC1-204ENST00000429035 VAMP8Q9BV40 100 aa7.3□□□□□ -1.24
SDC1-204ENST00000429035 RBM12B-AS1Q9P1G2 102 aa7.3□□□□□ -1.24
SDC1-204ENST00000429035 PRO1854Q9UHT4 67 aa7.3□□□□□ -1.24
SDC1-204ENST00000429035 TMA7Q9Y2S6 64 aaKnown RBP7.3□□□□□ -1.24
SDC1-204ENST00000429035 DEFB116Q30KQ4 102 aa7.29□□□□□ -1.24
SDC1-204ENST00000429035 KRTAP16-1A8MUX0 517 aa7.28□□□□□ -1.24
SDC1-204ENST00000429035 MT2AP02795 61 aa7.27□□□□□ -1.25
SDC1-204ENST00000429035 FXYD2P54710 66 aa7.27□□□□□ -1.25
SDC1-204ENST00000429035 ORMDL1Q9P0S3 153 aa7.27□□□□□ -1.25
SDC1-204ENST00000429035 USH2AO75445 5202 aa7.26□□□□□ -1.25
SDC1-204ENST00000429035 IGHV6-1A0A0B4J1U7 121 aa7.26□□□□□ -1.25
SDC1-204ENST00000429035 TRACP01848 142 aa7.26□□□□□ -1.25
SDC1-204ENST00000429035 NOTCH2NLQ7Z3S9 236 aa7.26□□□□□ -1.25
SDC1-204ENST00000429035 SSPOA2VEC9 5147 aa7.25□□□□□ -1.25
SDC1-204ENST00000429035 TRBV7-4A0A0J9YYF1 115 aa7.25□□□□□ -1.25
SDC1-204ENST00000429035 PSMB2P49721 201 aa7.25□□□□□ -1.25
SDC1-204ENST00000429035 HRES1P13985 223 aa7.24□□□□□ -1.25
SDC1-204ENST00000429035 MT1FP04733 61 aa7.23□□□□□ -1.25
SDC1-204ENST00000429035 CCKP06307 115 aa7.23□□□□□ -1.25
SDC1-204ENST00000429035 VPS25Q9BRG1 176 aa7.23□□□□□ -1.25
SDC1-204ENST00000429035 K7ERJ3 54 aa7.22□□□□□ -1.25
SDC1-204ENST00000429035 KRTAP10-10P60014 251 aa7.21□□□□□ -1.26
SDC1-204ENST00000429035 H3BQ85 93 aa7.2□□□□□ -1.26
SDC1-204ENST00000429035 TMEM256-PLSCR3K7ERE1 68 aa7.2□□□□□ -1.26
SDC1-204ENST00000429035 LINC00472Q9H8W2 130 aa7.2□□□□□ -1.26
SDC1-204ENST00000429035 LOC105371267A0A1B0GV96 52 aa7.19□□□□□ -1.26
SDC1-204ENST00000429035 MPLKIPQ8TAP9 179 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms