RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 C9orf153Q5TBE3 101 aa6.08□□□□□ -1.44
CD44-207ENST00000425428 H3BMG7 143 aa6.07□□□□□ -1.44
CD44-207ENST00000425428 LINC00483Q53H64 154 aa6.07□□□□□ -1.44
CD44-207ENST00000425428 KIAA1109Q2LD37 5005 aa6.07□□□□□ -1.44
CD44-207ENST00000425428 KRTAP9-6A0A140TA67 174 aa6.06□□□□□ -1.44
CD44-207ENST00000425428 K7EP34 96 aa6.06□□□□□ -1.44
CD44-207ENST00000425428 SPRR1BP22528 89 aa6.06□□□□□ -1.44
CD44-207ENST00000425428 IGLV9-49A0A0B4J1Y8 123 aa6.06□□□□□ -1.44
CD44-207ENST00000425428 Q8N377 158 aa6.06□□□□□ -1.44
CD44-207ENST00000425428 SRRM2Q9UQ35 2752 aaKnown RBP6.05□□□□□ -1.44
CD44-207ENST00000425428 UBE2V1Q13404 147 aa6.05□□□□□ -1.44
CD44-207ENST00000425428 C4orf48Q5BLP8 95 aa6.05□□□□□ -1.44
CD44-207ENST00000425428 XP32Q5T750 250 aa6.05□□□□□ -1.44
CD44-207ENST00000425428 TYMSOSQ8TAI1 123 aa6.05□□□□□ -1.44
CD44-207ENST00000425428 H3BT86 120 aa6.04□□□□□ -1.44
CD44-207ENST00000425428 OXTP01178 125 aa6.04□□□□□ -1.44
CD44-207ENST00000425428 NDUFV3P56181 108 aaKnown RBP6.04□□□□□ -1.44
CD44-207ENST00000425428 ANKRD29Q8N6D5 301 aa6.03□□□□□ -1.44
CD44-207ENST00000425428 Q8NBF4 154 aa6.03□□□□□ -1.44
CD44-207ENST00000425428 ANAPC11Q9NYG5 84 aa6.03□□□□□ -1.44
CD44-207ENST00000425428 FAT1Q14517 4588 aa6.03□□□□□ -1.44
CD44-207ENST00000425428 JMJD7-PLA2G4BH0Y9G9 81 aa6.03□□□□□ -1.44
CD44-207ENST00000425428 LCE2CQ5TA81 110 aa6.03□□□□□ -1.44
CD44-207ENST00000425428 SSBP3-AS1Q7Z2R9 100 aa6.03□□□□□ -1.44
CD44-207ENST00000425428 LINC01600Q96MT4 127 aa6.03□□□□□ -1.44
CD44-207ENST00000425428 KRTAP1-4P0C5Y4 121 aa6.02□□□□□ -1.45
CD44-207ENST00000425428 LINC01547P58512 204 aaPredicted RBP6.02□□□□□ -1.45
CD44-207ENST00000425428 MOBPQ13875 183 aa6.02□□□□□ -1.45
CD44-207ENST00000425428 Q6JHZ5 121 aa6.02□□□□□ -1.45
CD44-207ENST00000425428 F8W1H4 67 aa6.01□□□□□ -1.45
CD44-207ENST00000425428 DSCR8Q96T75 97 aa6.01□□□□□ -1.45
CD44-207ENST00000425428 J3QL48 77 aa6.01□□□□□ -1.45
CD44-207ENST00000425428 RBM3P98179 157 aaKnown RBP6.01□□□□□ -1.45
CD44-207ENST00000425428 C21orf62-AS1Q17RA5 79 aa6.01□□□□□ -1.45
CD44-207ENST00000425428 C3orf22Q8N5N4 141 aa6.01□□□□□ -1.45
CD44-207ENST00000425428 PRR26Q8N8Z3 221 aa6.01□□□□□ -1.45
CD44-207ENST00000425428 A0A1B0GV90 55 aa5.99□□□□□ -1.45
CD44-207ENST00000425428 A0A087X002 238 aa5.98□□□□□ -1.45
CD44-207ENST00000425428 SPAG11AQ6PDA7 123 aa5.98□□□□□ -1.45
CD44-207ENST00000425428 SMIM29Q86T20 159 aa5.98□□□□□ -1.45
CD44-207ENST00000425428 MTURNQ8N3F0 131 aa5.98□□□□□ -1.45
CD44-207ENST00000425428 KRTAP4-5Q9BYR2 181 aa5.98□□□□□ -1.45
CD44-207ENST00000425428 FLG2Q5D862 2391 aaPredicted RBP5.98□□□□□ -1.45
CD44-207ENST00000425428 A0A1B0GV72 72 aa5.98□□□□□ -1.45
CD44-207ENST00000425428 PDE6GP18545 87 aa5.98□□□□□ -1.45
CD44-207ENST00000425428 KRTAP17-1Q9BYP8 105 aa5.98□□□□□ -1.45
CD44-207ENST00000425428 KRTAP29-1A8MX34 341 aaPredicted RBP5.97□□□□□ -1.45
CD44-207ENST00000425428 LORP23490 312 aaPredicted RBP5.97□□□□□ -1.45
CD44-207ENST00000425428 PKHD1L1Q86WI1 4243 aa5.96□□□□□ -1.45
CD44-207ENST00000425428 LINC00304Q8N9R0 145 aa5.96□□□□□ -1.46
CD44-207ENST00000425428 IGLV8-61A0A075B6I0 122 aa5.95□□□□□ -1.46
CD44-207ENST00000425428 KRTAP13-2Q52LG2 175 aa5.95□□□□□ -1.46
CD44-207ENST00000425428 CD164Q04900 197 aa5.94□□□□□ -1.46
CD44-207ENST00000425428 VPS25Q9BRG1 176 aa5.94□□□□□ -1.46
CD44-207ENST00000425428 SPINK1P00995 79 aa5.93□□□□□ -1.46
CD44-207ENST00000425428 LIMD2Q9BT23 127 aa5.93□□□□□ -1.46
CD44-207ENST00000425428 HERC2O95714 4834 aa5.93□□□□□ -1.46
CD44-207ENST00000425428 CCKP06307 115 aa5.93□□□□□ -1.46
CD44-207ENST00000425428 IGFL1Q6UW32 110 aa5.93□□□□□ -1.46
CD44-207ENST00000425428 HRCT1Q6UXD1 115 aa5.93□□□□□ -1.46
CD44-207ENST00000425428 TEN1Q86WV5 123 aa5.93□□□□□ -1.46
CD44-207ENST00000425428 KRTAP10-8P60410 259 aa5.92□□□□□ -1.46
CD44-207ENST00000425428 C14orf132Q9NPU4 83 aa5.91□□□□□ -1.46
CD44-207ENST00000425428 SS18L2Q9UHA2 77 aa5.91□□□□□ -1.46
CD44-207ENST00000425428 PRO0461Q9UI25 63 aa5.91□□□□□ -1.46
CD44-207ENST00000425428 LOC110117498A0A087WWA1 95 aa5.9□□□□□ -1.46
CD44-207ENST00000425428 TRBV7-4A0A0J9YYF1 115 aa5.9□□□□□ -1.47
CD44-207ENST00000425428 A0A1B0GW54 56 aa5.9□□□□□ -1.47
CD44-207ENST00000425428 ETDBQ3ZM63 59 aa5.9□□□□□ -1.47
CD44-207ENST00000425428 RPS29P62273 56 aaKnown RBP5.89□□□□□ -1.47
CD44-207ENST00000425428 Q6Q795 121 aa5.89□□□□□ -1.47
CD44-207ENST00000425428 OBSCN-AS1Q96MR7 158 aa5.89□□□□□ -1.47
CD44-207ENST00000425428 TRBV7-7A0A0K0K1E9 115 aa5.88□□□□□ -1.47
CD44-207ENST00000425428 Q6ZQT0 140 aa5.87□□□□□ -1.47
CD44-207ENST00000425428 J3QR89 54 aa5.86□□□□□ -1.47
CD44-207ENST00000425428 A0A0G2JQZ4 141 aa5.85□□□□□ -1.47
CD44-207ENST00000425428 MT1HL1P0DM35 61 aa5.85□□□□□ -1.47
CD44-207ENST00000425428 DMBT1Q9UGM3 2413 aaPredicted RBP5.85□□□□□ -1.47
CD44-207ENST00000425428 A0A087WSZ3 146 aa5.85□□□□□ -1.47
CD44-207ENST00000425428 A0A1W2PNM2 257 aa5.84□□□□□ -1.47
CD44-207ENST00000425428 LCE3BQ5TA77 95 aa5.84□□□□□ -1.47
CD44-207ENST00000425428 Q5XG85 94 aa5.83□□□□□ -1.48
CD44-207ENST00000425428 NREPQ16612 68 aa5.82□□□□□ -1.48
CD44-207ENST00000425428 FAT3Q8TDW7 4589 aa5.81□□□□□ -1.48
CD44-207ENST00000425428 KRTAP4-8A0A0G2JLE6 195 aa5.81□□□□□ -1.48
CD44-207ENST00000425428 ACYP1P07311 99 aa5.81□□□□□ -1.48
CD44-207ENST00000425428 UBL5Q9BZL1 73 aa5.81□□□□□ -1.48
CD44-207ENST00000425428 ABCA13Q86UQ4 5058 aa5.81□□□□□ -1.48
CD44-207ENST00000425428 MYCBP2O75592 4640 aa5.8□□□□□ -1.48
CD44-207ENST00000425428 LRP1Q07954 4544 aaKnown RBP5.8□□□□□ -1.48
CD44-207ENST00000425428 ASB16-AS1Q495Z4 193 aa5.8□□□□□ -1.48
CD44-207ENST00000425428 KRTAP9-9Q9BYP9 154 aa5.78□□□□□ -1.48
CD44-207ENST00000425428 KRTAP9-4Q9BYQ2 154 aa5.78□□□□□ -1.48
CD44-207ENST00000425428 J3KT08 172 aa5.78□□□□□ -1.48
CD44-207ENST00000425428 FP248Q71RG6 208 aaPredicted RBP5.78□□□□□ -1.48
CD44-207ENST00000425428 TNXBP22105 4242 aa5.77□□□□□ -1.49
CD44-207ENST00000425428 PRR4Q16378 134 aa5.77□□□□□ -1.49
CD44-207ENST00000425428 FAM240AA0A1B0GVK7 77 aa5.76□□□□□ -1.49
CD44-207ENST00000425428 K7ERU9 68 aa5.75□□□□□ -1.49
CD44-207ENST00000425428 NDUFB1O75438 58 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms