RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.38□□□□□ -1.07
VPS54-203ENST00000409558 H0Y9J4 135 aa8.37□□□□□ -1.07
VPS54-203ENST00000409558 PLA2G2DQ9UNK4 145 aa8.36□□□□□ -1.07
VPS54-203ENST00000409558 MPLKIPQ8TAP9 179 aa8.36□□□□□ -1.07
VPS54-203ENST00000409558 FBN3Q75N90 2809 aa8.36□□□□□ -1.07
VPS54-203ENST00000409558 LY6G6CO95867 125 aa8.35□□□□□ -1.07
VPS54-203ENST00000409558 DSCR10P59022 87 aa8.35□□□□□ -1.07
VPS54-203ENST00000409558 B9D2Q9BPU9 175 aa8.35□□□□□ -1.07
VPS54-203ENST00000409558 MEGF8Q7Z7M0 2845 aa8.35□□□□□ -1.07
VPS54-203ENST00000409558 DNAH3Q8TD57 4116 aa8.34□□□□□ -1.07
VPS54-203ENST00000409558 IGLV5-37A0A075B6J1 123 aa8.34□□□□□ -1.07
VPS54-203ENST00000409558 TNP2Q05952 138 aa8.33□□□□□ -1.08
VPS54-203ENST00000409558 LINC00474Q9P2X8 69 aa8.33□□□□□ -1.08
VPS54-203ENST00000409558 C9orf163Q8N9P6 203 aa8.32□□□□□ -1.08
VPS54-203ENST00000409558 C14orf177Q52M58 125 aa8.32□□□□□ -1.08
VPS54-203ENST00000409558 CNBPP62633 177 aaKnown RBP8.31□□□□□ -1.08
VPS54-203ENST00000409558 DNHD1Q96M86 4753 aa8.31□□□□□ -1.08
VPS54-203ENST00000409558 PRKDCP78527 4128 aaKnown RBP8.3□□□□□ -1.08
VPS54-203ENST00000409558 OCR1Q9BZK8 76 aa8.29□□□□□ -1.08
VPS54-203ENST00000409558 NUPR2A6NF83 97 aa8.29□□□□□ -1.08
VPS54-203ENST00000409558 SPINK6Q6UWN8 80 aa8.29□□□□□ -1.08
VPS54-203ENST00000409558 STARD9Q9P2P6 4700 aa8.29□□□□□ -1.08
VPS54-203ENST00000409558 KLKP1Q107X0 134 aa8.28□□□□□ -1.08
VPS54-203ENST00000409558 KMT2AQ03164 3969 aa8.27□□□□□ -1.09
VPS54-203ENST00000409558 HCG22E2RYF7 251 aa8.27□□□□□ -1.09
VPS54-203ENST00000409558 RTL8CO15255 209 aa8.25□□□□□ -1.09
VPS54-203ENST00000409558 NDUFS5O43920 106 aa8.25□□□□□ -1.09
VPS54-203ENST00000409558 LINC00208Q96KT6 92 aa8.25□□□□□ -1.09
VPS54-203ENST00000409558 SPRR4Q96PI1 79 aa8.25□□□□□ -1.09
VPS54-203ENST00000409558 A0A087WTM6 91 aa8.24□□□□□ -1.09
VPS54-203ENST00000409558 MOBPQ13875 183 aa8.24□□□□□ -1.09
VPS54-203ENST00000409558 DNAH1Q9P2D7 4330 aa8.24□□□□□ -1.09
VPS54-203ENST00000409558 FAM229BQ4G0N7 80 aa8.23□□□□□ -1.09
VPS54-203ENST00000409558 IGLV5-52A0A0A0MRZ9 124 aa8.22□□□□□ -1.09
VPS54-203ENST00000409558 PSORS1C2Q9UIG4 136 aa8.22□□□□□ -1.09
VPS54-203ENST00000409558 BCE1O60756 84 aa8.21□□□□□ -1.09
VPS54-203ENST00000409558 CASC2Q6XLA1 102 aa8.21□□□□□ -1.1
VPS54-203ENST00000409558 Q6ZRN7 208 aaPredicted RBP8.2□□□□□ -1.1
VPS54-203ENST00000409558 RPS28P62857 69 aaKnown RBP8.2□□□□□ -1.1
VPS54-203ENST00000409558 SERP1Q9Y6X1 66 aa8.2□□□□□ -1.1
VPS54-203ENST00000409558 FRAS1Q86XX4 4008 aa8.2□□□□□ -1.1
VPS54-203ENST00000409558 IGHV6-1A0A0B4J1U7 121 aa8.2□□□□□ -1.1
VPS54-203ENST00000409558 A0A0U1RQV1 116 aa8.2□□□□□ -1.1
VPS54-203ENST00000409558 CIRBP-AS1Q8TBR5 109 aa8.18□□□□□ -1.1
VPS54-203ENST00000409558 Q5XG85 94 aa8.18□□□□□ -1.1
VPS54-203ENST00000409558 PCOTHQ58A44 107 aa8.17□□□□□ -1.1
VPS54-203ENST00000409558 C1orf134Q5TEV5 83 aa8.16□□□□□ -1.1
VPS54-203ENST00000409558 MP68P56378 58 aa8.15□□□□□ -1.1
VPS54-203ENST00000409558 SPACA4Q8TDM5 124 aa8.15□□□□□ -1.1
VPS54-203ENST00000409558 NDUFC1O43677 76 aa8.14□□□□□ -1.11
VPS54-203ENST00000409558 RETNLBQ9BQ08 111 aa8.14□□□□□ -1.11
VPS54-203ENST00000409558 FP248Q71RG6 208 aaPredicted RBP8.14□□□□□ -1.11
VPS54-203ENST00000409558 H0Y9P7 68 aa8.13□□□□□ -1.11
VPS54-203ENST00000409558 CDK2AP2O75956 126 aa8.13□□□□□ -1.11
VPS54-203ENST00000409558 NDUFB1O75438 58 aa8.12□□□□□ -1.11
VPS54-203ENST00000409558 PRR15Q8IV56 129 aa8.12□□□□□ -1.11
VPS54-203ENST00000409558 BRK1Q8WUW1 75 aa8.11□□□□□ -1.11
VPS54-203ENST00000409558 PSPHP1O15172 72 aa8.1□□□□□ -1.11
VPS54-203ENST00000409558 KRTAP10-2P60368 255 aa8.1□□□□□ -1.11
VPS54-203ENST00000409558 SMIM26A0A096LP01 95 aa8.09□□□□□ -1.11
VPS54-203ENST00000409558 A8MWP4 228 aa8.09□□□□□ -1.11
VPS54-203ENST00000409558 C1orf64Q8NEQ6 169 aa8.09□□□□□ -1.11
VPS54-203ENST00000409558 LINC00336Q6ZUF6 198 aa8.08□□□□□ -1.12
VPS54-203ENST00000409558 LINC00472Q9H8W2 130 aa8.08□□□□□ -1.12
VPS54-203ENST00000409558 hDV103S1A0JD37 113 aa8.07□□□□□ -1.12
VPS54-203ENST00000409558 C5orf47Q569G3 176 aa8.07□□□□□ -1.12
VPS54-203ENST00000409558 A0A087X002 238 aa8.07□□□□□ -1.12
VPS54-203ENST00000409558 NOTCH2NLQ7Z3S9 236 aa8.07□□□□□ -1.12
VPS54-203ENST00000409558 A0A1B0GW54 56 aa8.07□□□□□ -1.12
VPS54-203ENST00000409558 SVIPQ8NHG7 77 aa8.06□□□□□ -1.12
VPS54-203ENST00000409558 VPS13DQ5THJ4 4388 aa8.05□□□□□ -1.12
VPS54-203ENST00000409558 IGLV8-61A0A075B6I0 122 aa8.05□□□□□ -1.12
VPS54-203ENST00000409558 ZNF861PO60384 105 aa8.04□□□□□ -1.12
VPS54-203ENST00000409558 DNAH2Q9P225 4427 aa8.03□□□□□ -1.12
VPS54-203ENST00000409558 KRTAP13-1Q8IUC0 172 aa8.03□□□□□ -1.12
VPS54-203ENST00000409558 PKIGQ9Y2B9 76 aa8.03□□□□□ -1.12
VPS54-203ENST00000409558 DNAH6Q9C0G6 4158 aa8.02□□□□□ -1.13
VPS54-203ENST00000409558 WWC2-AS2Q96NR7 200 aa8.02□□□□□ -1.13
VPS54-203ENST00000409558 SPRR1BP22528 89 aa8.02□□□□□ -1.13
VPS54-203ENST00000409558 DNAH11Q96DT5 4516 aa8.01□□□□□ -1.13
VPS54-203ENST00000409558 Q6ZR54 194 aa8.01□□□□□ -1.13
VPS54-203ENST00000409558 MMP24-AS1A0A0U1RRL7 71 aa8□□□□□ -1.13
VPS54-203ENST00000409558 KRTAP29-1A8MX34 341 aaPredicted RBP7.99□□□□□ -1.13
VPS54-203ENST00000409558 TRAV22A0A0B4J277 110 aa7.98□□□□□ -1.13
VPS54-203ENST00000409558 DNAH17Q9UFH2 4485 aa7.98□□□□□ -1.13
VPS54-203ENST00000409558 IGLV7-43P04211 117 aa7.98□□□□□ -1.13
VPS54-203ENST00000409558 ATP5EP56381 51 aaPredicted RBP7.98□□□□□ -1.13
VPS54-203ENST00000409558 ZNF706Q9Y5V0 76 aaPredicted RBP7.98□□□□□ -1.13
VPS54-203ENST00000409558 C8orf17Q9NRJ1 99 aa7.97□□□□□ -1.13
VPS54-203ENST00000409558 DNAH8Q96JB1 4490 aa7.96□□□□□ -1.14
VPS54-203ENST00000409558 PLAC8Q9NZF1 115 aa7.96□□□□□ -1.14
VPS54-203ENST00000409558 ZCCHC13Q8WW36 166 aaKnown RBP7.95□□□□□ -1.14
VPS54-203ENST00000409558 Q96NJ1 140 aa7.95□□□□□ -1.14
VPS54-203ENST00000409558 SMR3BP02814 79 aaPredicted RBP7.94□□□□□ -1.14
VPS54-203ENST00000409558 HECTD4Q9Y4D8 3996 aa7.94□□□□□ -1.14
VPS54-203ENST00000409558 KRTAP10-1P60331 282 aa7.94□□□□□ -1.14
VPS54-203ENST00000409558 A0A1B0GVX0 72 aa7.92□□□□□ -1.14
VPS54-203ENST00000409558 HYDINQ4G0P3 5121 aa7.92□□□□□ -1.14
VPS54-203ENST00000409558 A8MUN3 132 aa7.92□□□□□ -1.14
VPS54-203ENST00000409558 LCE6AA0A183 80 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms