RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 A0A1B0GW54 56 aa12.78□□□□□ -0.36
USP39-203ENST00000409470 SCXQ7RTU7 201 aa12.78□□□□□ -0.36
USP39-203ENST00000409470 PLAC8Q9NZF1 115 aa12.78□□□□□ -0.36
USP39-203ENST00000409470 CCDC179H3BU77 68 aa12.77□□□□□ -0.37
USP39-203ENST00000409470 KRTAP13-1Q8IUC0 172 aa12.77□□□□□ -0.37
USP39-203ENST00000409470 ALMS1Q8TCU4 4167 aa12.76□□□□□ -0.37
USP39-203ENST00000409470 SPRR1BP22528 89 aa12.74□□□□□ -0.37
USP39-203ENST00000409470 SPRR4Q96PI1 79 aa12.74□□□□□ -0.37
USP39-203ENST00000409470 IGFL1Q6UW32 110 aa12.74□□□□□ -0.37
USP39-203ENST00000409470 IGLV8-61A0A075B6I0 122 aa12.72□□□□□ -0.37
USP39-203ENST00000409470 A0A0G2JQZ4 141 aa12.72□□□□□ -0.37
USP39-203ENST00000409470 PSORS1C2Q9UIG4 136 aa12.72□□□□□ -0.37
USP39-203ENST00000409470 CRYGAP11844 174 aa12.7□□□□□ -0.38
USP39-203ENST00000409470 BPY2O14599 106 aa12.69□□□□□ -0.38
USP39-203ENST00000409470 KRTAP10-2P60368 255 aa12.69□□□□□ -0.38
USP39-203ENST00000409470 SRRM2Q9UQ35 2752 aaKnown RBP12.69□□□□□ -0.38
USP39-203ENST00000409470 UQCRQO14949 82 aa12.64□□□□□ -0.39
USP39-203ENST00000409470 COX7CP15954 63 aa12.64□□□□□ -0.39
USP39-203ENST00000409470 Q8N9L7 120 aa12.64□□□□□ -0.39
USP39-203ENST00000409470 FRAS1Q86XX4 4008 aa12.64□□□□□ -0.39
USP39-203ENST00000409470 DNAH8Q96JB1 4490 aa12.63□□□□□ -0.39
USP39-203ENST00000409470 SERP2Q8N6R1 65 aa12.62□□□□□ -0.39
USP39-203ENST00000409470 ZNF861PO60384 105 aa12.61□□□□□ -0.39
USP39-203ENST00000409470 FAM30AQ9NZY2 134 aa12.61□□□□□ -0.39
USP39-203ENST00000409470 ZNF706Q9Y5V0 76 aaPredicted RBP12.61□□□□□ -0.39
USP39-203ENST00000409470 IGKV4-1P06312 121 aa12.6□□□□□ -0.39
USP39-203ENST00000409470 A0A087WSZ3 146 aa12.59□□□□□ -0.39
USP39-203ENST00000409470 DNAH11Q96DT5 4516 aa12.59□□□□□ -0.39
USP39-203ENST00000409470 C9orf153Q5TBE3 101 aa12.59□□□□□ -0.39
USP39-203ENST00000409470 HYDINQ4G0P3 5121 aa12.58□□□□□ -0.4
USP39-203ENST00000409470 CIRBP-AS1Q8TBR5 109 aa12.58□□□□□ -0.4
USP39-203ENST00000409470 DNAH5Q8TE73 4624 aa12.58□□□□□ -0.4
USP39-203ENST00000409470 LINC00483Q53H64 154 aa12.57□□□□□ -0.4
USP39-203ENST00000409470 IGLV9-49A0A0B4J1Y8 123 aa12.56□□□□□ -0.4
USP39-203ENST00000409470 IGLV7-43P04211 117 aa12.54□□□□□ -0.4
USP39-203ENST00000409470 KRTAP10-1P60331 282 aa12.54□□□□□ -0.4
USP39-203ENST00000409470 FAT2Q9NYQ8 4349 aa12.51□□□□□ -0.41
USP39-203ENST00000409470 DSCR10P59022 87 aa12.5□□□□□ -0.41
USP39-203ENST00000409470 SMIM20Q8N5G0 67 aa12.5□□□□□ -0.41
USP39-203ENST00000409470 Q6ZSA8 131 aa12.5□□□□□ -0.41
USP39-203ENST00000409470 TRAV7A0A075B6U4 112 aa12.49□□□□□ -0.41
USP39-203ENST00000409470 DEFB116Q30KQ4 102 aa12.49□□□□□ -0.41
USP39-203ENST00000409470 PKD1P98161 4303 aa12.48□□□□□ -0.41
USP39-203ENST00000409470 ANAPC11Q9NYG5 84 aa12.48□□□□□ -0.41
USP39-203ENST00000409470 K7EQZ3 153 aa12.46□□□□□ -0.41
USP39-203ENST00000409470 RPL37AP61513 92 aaKnown RBP12.45□□□□□ -0.42
USP39-203ENST00000409470 MOBPQ13875 183 aa12.45□□□□□ -0.42
USP39-203ENST00000409470 SS18L2Q9UHA2 77 aa12.44□□□□□ -0.42
USP39-203ENST00000409470 LCE6AA0A183 80 aa12.4□□□□□ -0.42
USP39-203ENST00000409470 HRCT1Q6UXD1 115 aa12.4□□□□□ -0.42
USP39-203ENST00000409470 SACSQ9NZJ4 4579 aa12.4□□□□□ -0.42
USP39-203ENST00000409470 C20orf197Q8N268 126 aa12.38□□□□□ -0.43
USP39-203ENST00000409470 LINC00472Q9H8W2 130 aa12.38□□□□□ -0.43
USP39-203ENST00000409470 CYSTM1Q9H1C7 97 aa12.37□□□□□ -0.43
USP39-203ENST00000409470 HCG22E2RYF7 251 aa12.33□□□□□ -0.43
USP39-203ENST00000409470 LINC00336Q6ZUF6 198 aa12.33□□□□□ -0.43
USP39-203ENST00000409470 OCR1Q9BZK8 76 aa12.33□□□□□ -0.44
USP39-203ENST00000409470 A8MWP4 228 aa12.3□□□□□ -0.44
USP39-203ENST00000409470 LRP1BQ9NZR2 4599 aa12.3□□□□□ -0.44
USP39-203ENST00000409470 J3KT08 172 aa12.3□□□□□ -0.44
USP39-203ENST00000409470 PRR15Q8IV56 129 aa12.28□□□□□ -0.44
USP39-203ENST00000409470 WFDC13Q8IUB5 93 aa12.27□□□□□ -0.44
USP39-203ENST00000409470 SNURFQ9Y675 71 aa12.26□□□□□ -0.45
USP39-203ENST00000409470 Q96NJ1 140 aa12.25□□□□□ -0.45
USP39-203ENST00000409470 KLKP1Q107X0 134 aa12.24□□□□□ -0.45
USP39-203ENST00000409470 NDUFB1O75438 58 aa12.23□□□□□ -0.45
USP39-203ENST00000409470 SSBP3-AS1Q7Z2R9 100 aa12.23□□□□□ -0.45
USP39-203ENST00000409470 TMEM258P61165 79 aa12.22□□□□□ -0.45
USP39-203ENST00000409470 TMEM254Q8TBM7 123 aa12.22□□□□□ -0.45
USP39-203ENST00000409470 CASC2Q6XLA1 102 aa12.2□□□□□ -0.46
USP39-203ENST00000409470 PKHD1P08F94 4074 aa12.19□□□□□ -0.46
USP39-203ENST00000409470 A0A087X002 238 aa12.18□□□□□ -0.46
USP39-203ENST00000409470 CD164Q04900 197 aa12.18□□□□□ -0.46
USP39-203ENST00000409470 A0A1B0GVY2 172 aa12.17□□□□□ -0.46
USP39-203ENST00000409470 KRTAP29-1A8MX34 341 aaPredicted RBP12.17□□□□□ -0.46
USP39-203ENST00000409470 FAM229BQ4G0N7 80 aa12.17□□□□□ -0.46
USP39-203ENST00000409470 CDK2AP2O75956 126 aa12.15□□□□□ -0.46
USP39-203ENST00000409470 H7BZZ5 65 aa12.15□□□□□ -0.47
USP39-203ENST00000409470 KRTAP13-2Q52LG2 175 aa12.15□□□□□ -0.47
USP39-203ENST00000409470 VPS13BQ7Z7G8 4022 aa12.14□□□□□ -0.47
USP39-203ENST00000409470 A0A0U1RQV1 116 aa12.13□□□□□ -0.47
USP39-203ENST00000409470 MMP24-AS1A0A0U1RRL7 71 aa12.13□□□□□ -0.47
USP39-203ENST00000409470 NDUFC1O43677 76 aa12.12□□□□□ -0.47
USP39-203ENST00000409470 KRTAP1-4P0C5Y4 121 aa12.12□□□□□ -0.47
USP39-203ENST00000409470 IGHV6-1A0A0B4J1U7 121 aa12.1□□□□□ -0.47
USP39-203ENST00000409470 SPINK6Q6UWN8 80 aa12.1□□□□□ -0.47
USP39-203ENST00000409470 DYNC1H1Q14204 4646 aaKnown RBP12.09□□□□□ -0.47
USP39-203ENST00000409470 A0A1B0GVX0 72 aa12.09□□□□□ -0.47
USP39-203ENST00000409470 hDV103S1A0JD37 113 aa12.09□□□□□ -0.47
USP39-203ENST00000409470 C5orf47Q569G3 176 aa12.09□□□□□ -0.47
USP39-203ENST00000409470 RYR2Q92736 4967 aa12.08□□□□□ -0.48
USP39-203ENST00000409470 SMR3BP02814 79 aaPredicted RBP12.08□□□□□ -0.48
USP39-203ENST00000409470 PLA2G1BP04054 148 aaKnown RBP12.07□□□□□ -0.48
USP39-203ENST00000409470 C8orf17Q9NRJ1 99 aa12.07□□□□□ -0.48
USP39-203ENST00000409470 FAM236DA0A1B0GTK5 79 aa12.05□□□□□ -0.48
USP39-203ENST00000409470 FAM236CP0DP71 79 aa12.05□□□□□ -0.48
USP39-203ENST00000409470 ASB16-AS1Q495Z4 193 aa12.03□□□□□ -0.48
USP39-203ENST00000409470 KMT2CQ8NEZ4 4911 aaKnown RBP12.01□□□□□ -0.49
USP39-203ENST00000409470 MP68P56378 58 aa12□□□□□ -0.49
USP39-203ENST00000409470 TYMSOSQ8TAI1 123 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms