RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 C19orf73Q9NVV2 129 aa8.6□□□□□ -1.03
USP49-203ENST00000394253 CNBPP62633 177 aaKnown RBP8.58□□□□□ -1.04
USP49-203ENST00000394253 A0A0G2JQZ4 141 aa8.58□□□□□ -1.04
USP49-203ENST00000394253 A0A1W2PNN7 141 aa8.58□□□□□ -1.04
USP49-203ENST00000394253 RPL37P61927 97 aaKnown RBP8.57□□□□□ -1.04
USP49-203ENST00000394253 FP248Q71RG6 208 aaPredicted RBP8.55□□□□□ -1.04
USP49-203ENST00000394253 A0A087WTM6 91 aa8.55□□□□□ -1.04
USP49-203ENST00000394253 ANAPC11Q9NYG5 84 aa8.54□□□□□ -1.04
USP49-203ENST00000394253 A0A1W2PPR1 153 aa8.53□□□□□ -1.04
USP49-203ENST00000394253 SETXQ7Z333 2677 aaKnown RBP8.53□□□□□ -1.04
USP49-203ENST00000394253 PLAC4Q8WY50 150 aa8.49□□□□□ -1.05
USP49-203ENST00000394253 ZCCHC13Q8WW36 166 aaKnown RBP8.48□□□□□ -1.05
USP49-203ENST00000394253 CFAP54Q96N23 3096 aa8.46□□□□□ -1.05
USP49-203ENST00000394253 KLK9Q2XQG4 91 aa8.46□□□□□ -1.05
USP49-203ENST00000394253 ITPR1Q14643 2758 aa8.43□□□□□ -1.06
USP49-203ENST00000394253 ZNF292O60281 2723 aa8.43□□□□□ -1.06
USP49-203ENST00000394253 GIG44P09565 113 aaPredicted RBP8.42□□□□□ -1.06
USP49-203ENST00000394253 SEC61BP60468 96 aaKnown RBP8.42□□□□□ -1.06
USP49-203ENST00000394253 SMR3BP02814 79 aaPredicted RBP8.42□□□□□ -1.06
USP49-203ENST00000394253 LINC00612Q8N6U2 182 aa8.42□□□□□ -1.06
USP49-203ENST00000394253 UBR5O95071 2799 aaPredicted RBP8.39□□□□□ -1.07
USP49-203ENST00000394253 DNAH12Q6ZR08 3092 aa8.38□□□□□ -1.07
USP49-203ENST00000394253 Q5W150 140 aa8.37□□□□□ -1.07
USP49-203ENST00000394253 MMP24-AS1A0A0U1RRL7 71 aa8.36□□□□□ -1.07
USP49-203ENST00000394253 DSPP15924 2871 aaKnown RBP8.35□□□□□ -1.07
USP49-203ENST00000394253 EP400Q96L91 3159 aa8.35□□□□□ -1.07
USP49-203ENST00000394253 M0QZ58 72 aa8.34□□□□□ -1.08
USP49-203ENST00000394253 LAMA2P24043 3122 aaKnown RBP8.33□□□□□ -1.08
USP49-203ENST00000394253 NBEAL2Q6ZNJ1 2754 aa8.33□□□□□ -1.08
USP49-203ENST00000394253 KRTAP24-1Q3LI83 254 aa8.32□□□□□ -1.08
USP49-203ENST00000394253 A0A0C4DFX4 3053 aa8.3□□□□□ -1.08
USP49-203ENST00000394253 TRANK1O15050 2925 aa8.29□□□□□ -1.08
USP49-203ENST00000394253 C5orf42Q9H799 3197 aa8.29□□□□□ -1.08
USP49-203ENST00000394253 LRBAP50851 2863 aa8.28□□□□□ -1.08
USP49-203ENST00000394253 K7EIL1 84 aa8.28□□□□□ -1.08
USP49-203ENST00000394253 C20orf166-AS1Q96NR2 134 aa8.28□□□□□ -1.08
USP49-203ENST00000394253 CYSTM1Q9H1C7 97 aa8.26□□□□□ -1.09
USP49-203ENST00000394253 KRTAP10-11P60412 298 aa8.26□□□□□ -1.09
USP49-203ENST00000394253 KRTAP25-1Q3LHN0 102 aa8.26□□□□□ -1.09
USP49-203ENST00000394253 GOLGB1Q14789 3259 aaKnown RBP8.25□□□□□ -1.09
USP49-203ENST00000394253 NDUFAF8A1L188 74 aa8.24□□□□□ -1.09
USP49-203ENST00000394253 LINC00472Q9H8W2 130 aa8.23□□□□□ -1.09
USP49-203ENST00000394253 C10orf142B7Z368 130 aa8.22□□□□□ -1.09
USP49-203ENST00000394253 Q8NDZ9 215 aa8.21□□□□□ -1.09
USP49-203ENST00000394253 CHD9Q3L8U1 2897 aa8.2□□□□□ -1.1
USP49-203ENST00000394253 SPATA8Q6RVD6 105 aa8.2□□□□□ -1.1
USP49-203ENST00000394253 Q6ZR54 194 aa8.18□□□□□ -1.1
USP49-203ENST00000394253 A0A096LNT2 108 aa8.18□□□□□ -1.1
USP49-203ENST00000394253 ADM2Q7Z4H4 148 aa8.17□□□□□ -1.1
USP49-203ENST00000394253 PANO1I0J062 215 aa8.16□□□□□ -1.1
USP49-203ENST00000394253 CASC10Q5T4H9 136 aa8.15□□□□□ -1.11
USP49-203ENST00000394253 UTRNP46939 3433 aa8.14□□□□□ -1.11
USP49-203ENST00000394253 FRYLO94915 3013 aa8.12□□□□□ -1.11
USP49-203ENST00000394253 OXTP01178 125 aa8.11□□□□□ -1.11
USP49-203ENST00000394253 A6NN06 94 aa8.1□□□□□ -1.11
USP49-203ENST00000394253 SPRR1AP35321 89 aa8.1□□□□□ -1.11
USP49-203ENST00000394253 PLAC8Q9NZF1 115 aa8.1□□□□□ -1.11
USP49-203ENST00000394253 SPRR1BP22528 89 aa8.07□□□□□ -1.12
USP49-203ENST00000394253 TRIOO75962 3097 aa8.05□□□□□ -1.12
USP49-203ENST00000394253 A0A087X002 238 aa8.05□□□□□ -1.12
USP49-203ENST00000394253 TENM3Q9P273 2699 aa8.02□□□□□ -1.12
USP49-203ENST00000394253 KRTAP26-1Q6PEX3 210 aa8.01□□□□□ -1.13
USP49-203ENST00000394253 CHD7Q9P2D1 2997 aa8□□□□□ -1.13
USP49-203ENST00000394253 ASH1LQ9NR48 2969 aaKnown RBP7.98□□□□□ -1.13
USP49-203ENST00000394253 KALRNO60229 2985 aa7.97□□□□□ -1.13
USP49-203ENST00000394253 C10orf95Q9H7T3 257 aa7.97□□□□□ -1.13
USP49-203ENST00000394253 FRYQ5TBA9 3013 aa7.96□□□□□ -1.14
USP49-203ENST00000394253 FREM2Q5SZK8 3169 aa7.95□□□□□ -1.14
USP49-203ENST00000394253 NF1P21359 2839 aa7.94□□□□□ -1.14
USP49-203ENST00000394253 A8MUU9 505 aa7.91□□□□□ -1.14
USP49-203ENST00000394253 PP632Q6XCG6 107 aa7.91□□□□□ -1.14
USP49-203ENST00000394253 TNP1P09430 55 aa7.91□□□□□ -1.14
USP49-203ENST00000394253 TENM1Q9UKZ4 2725 aa7.9□□□□□ -1.14
USP49-203ENST00000394253 REV3LO60673 3130 aa7.89□□□□□ -1.15
USP49-203ENST00000394253 MGAQ8IWI9 3026 aa7.88□□□□□ -1.15
USP49-203ENST00000394253 COL12A1Q99715 3063 aa7.87□□□□□ -1.15
USP49-203ENST00000394253 VPS13AQ96RL7 3174 aa7.87□□□□□ -1.15
USP49-203ENST00000394253 KRTAP10-3P60369 221 aa7.86□□□□□ -1.15
USP49-203ENST00000394253 FLNCQ14315 2725 aa7.85□□□□□ -1.15
USP49-203ENST00000394253 KRTAP29-1A8MX34 341 aaPredicted RBP7.83□□□□□ -1.16
USP49-203ENST00000394253 CRYBG3Q68DQ2 2970 aa7.82□□□□□ -1.16
USP49-203ENST00000394253 Q5VSD8 79 aa7.8□□□□□ -1.16
USP49-203ENST00000394253 PRUNE2Q8WUY3 3088 aa7.8□□□□□ -1.16
USP49-203ENST00000394253 CELSR2Q9HCU4 2923 aa7.79□□□□□ -1.16
USP49-203ENST00000394253 NIPBLQ6KC79 2804 aaeCLIP7.78□□□□□ -1.16
USP49-203ENST00000394253 A8MU10 97 aa7.78□□□□□ -1.16
USP49-203ENST00000394253 PDZD2O15018 2839 aa7.78□□□□□ -1.16
USP49-203ENST00000394253 WDFY4Q6ZS81 3184 aa7.77□□□□□ -1.17
USP49-203ENST00000394253 KRTAP11-1Q8IUC1 163 aa7.77□□□□□ -1.17
USP49-203ENST00000394253 SRRM2Q9UQ35 2752 aaKnown RBP7.77□□□□□ -1.17
USP49-203ENST00000394253 HIVEP1P15822 2718 aa7.76□□□□□ -1.17
USP49-203ENST00000394253 RPS29P62273 56 aaKnown RBP7.75□□□□□ -1.17
USP49-203ENST00000394253 TGP01266 2768 aa7.73□□□□□ -1.17
USP49-203ENST00000394253 DMXL2Q8TDJ6 3036 aa7.71□□□□□ -1.18
USP49-203ENST00000394253 RANBP2P49792 3224 aaKnown RBP7.71□□□□□ -1.18
USP49-203ENST00000394253 LCE6AA0A183 80 aa7.7□□□□□ -1.18
USP49-203ENST00000394253 XIRP2A4UGR9 3374 aa7.68□□□□□ -1.18
USP49-203ENST00000394253 KRTAP4-16G5E9R7 235 aaPredicted RBP7.67□□□□□ -1.18
USP49-203ENST00000394253 LAMA1P25391 3075 aa7.67□□□□□ -1.18
USP49-203ENST00000394253 TACC2O95359 2948 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms