RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 DEFB1P60022 68 aa5.4□□□□□ -1.55
LIMS1-203ENST00000393310 CAMK2N1Q7Z7J9 78 aa5.39□□□□□ -1.55
LIMS1-203ENST00000393310 COX6B2Q6YFQ2 88 aa5.39□□□□□ -1.55
LIMS1-203ENST00000393310 CSNK1G2-AS1Q8NCQ2 148 aa5.39□□□□□ -1.55
LIMS1-203ENST00000393310 NIPBLQ6KC79 2804 aaeCLIP5.38□□□□□ -1.55
LIMS1-203ENST00000393310 SMIM29Q86T20 159 aa5.38□□□□□ -1.55
LIMS1-203ENST00000393310 SSBP3-AS1Q7Z2R9 100 aa5.38□□□□□ -1.55
LIMS1-203ENST00000393310 DMAC1Q96GE9 116 aa5.38□□□□□ -1.55
LIMS1-203ENST00000393310 DHRS4-AS1Q9P1J3 65 aa5.38□□□□□ -1.55
LIMS1-203ENST00000393310 PRAC2D3DTV9 90 aa5.38□□□□□ -1.55
LIMS1-203ENST00000393310 BRWD1-AS2P59051 145 aa5.38□□□□□ -1.55
LIMS1-203ENST00000393310 WFDC13Q8IUB5 93 aa5.38□□□□□ -1.55
LIMS1-203ENST00000393310 A0A087WYN8 130 aa5.37□□□□□ -1.55
LIMS1-203ENST00000393310 TRBV7-4A0A0J9YYF1 115 aa5.37□□□□□ -1.55
LIMS1-203ENST00000393310 COX7BP24311 80 aa5.37□□□□□ -1.55
LIMS1-203ENST00000393310 COA5Q86WW8 74 aa5.37□□□□□ -1.55
LIMS1-203ENST00000393310 TYMSOSQ8TAI1 123 aa5.37□□□□□ -1.55
LIMS1-203ENST00000393310 OCR1Q9BZK8 76 aa5.36□□□□□ -1.55
LIMS1-203ENST00000393310 COX6A2Q02221 97 aa5.36□□□□□ -1.55
LIMS1-203ENST00000393310 IGIPA6NJ69 53 aa5.35□□□□□ -1.55
LIMS1-203ENST00000393310 C9orf163Q8N9P6 203 aa5.35□□□□□ -1.55
LIMS1-203ENST00000393310 Q8N9P0 234 aaPredicted RBP5.35□□□□□ -1.55
LIMS1-203ENST00000393310 IGLV5-37A0A075B6J1 123 aa5.34□□□□□ -1.55
LIMS1-203ENST00000393310 ZFAND2AQ8N6M9 145 aa5.34□□□□□ -1.55
LIMS1-203ENST00000393310 CDC42SE2Q9NRR3 84 aa5.34□□□□□ -1.55
LIMS1-203ENST00000393310 SMIM1B2RUZ4 78 aa5.34□□□□□ -1.55
LIMS1-203ENST00000393310 C8orf17Q9NRJ1 99 aa5.34□□□□□ -1.55
LIMS1-203ENST00000393310 COX17Q14061 63 aa5.34□□□□□ -1.56
LIMS1-203ENST00000393310 IGLV2-14P01704 120 aa5.33□□□□□ -1.56
LIMS1-203ENST00000393310 IGLV4-3A0A075B6K6 122 aa5.33□□□□□ -1.56
LIMS1-203ENST00000393310 A8MWP4 228 aa5.33□□□□□ -1.56
LIMS1-203ENST00000393310 KRTAP3-3Q9BYR6 98 aa5.33□□□□□ -1.56
LIMS1-203ENST00000393310 KRTAP3-2Q9BYR7 98 aa5.33□□□□□ -1.56
LIMS1-203ENST00000393310 ACYP2P14621 99 aa5.33□□□□□ -1.56
LIMS1-203ENST00000393310 C10orf25Q5T742 122 aa5.33□□□□□ -1.56
LIMS1-203ENST00000393310 DEFB105AQ8NG35 78 aa5.33□□□□□ -1.56
LIMS1-203ENST00000393310 A8MTW9 85 aa5.32□□□□□ -1.56
LIMS1-203ENST00000393310 CDKN2A-AS1Q9UH64 79 aa5.32□□□□□ -1.56
LIMS1-203ENST00000393310 IGLV8-61A0A075B6I0 122 aa5.32□□□□□ -1.56
LIMS1-203ENST00000393310 IGKV1D-37A0A075B6S9 117 aa5.32□□□□□ -1.56
LIMS1-203ENST00000393310 FAM218AQ96MZ4 157 aa5.32□□□□□ -1.56
LIMS1-203ENST00000393310 A0A1B0GUV1 79 aa5.32□□□□□ -1.56
LIMS1-203ENST00000393310 LINC00612Q8N6U2 182 aa5.32□□□□□ -1.56
LIMS1-203ENST00000393310 Q9BRP9 147 aa5.32□□□□□ -1.56
LIMS1-203ENST00000393310 LINC01546A6NGU7 62 aa5.31□□□□□ -1.56
LIMS1-203ENST00000393310 KRTAP29-1A8MX34 341 aaPredicted RBP5.31□□□□□ -1.56
LIMS1-203ENST00000393310 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.31□□□□□ -1.56
LIMS1-203ENST00000393310 SPANXA2-OT1Q8N9U9 137 aa5.31□□□□□ -1.56
LIMS1-203ENST00000393310 IGLV5-39A0A0G2JS06 123 aa5.3□□□□□ -1.56
LIMS1-203ENST00000393310 CNFNQ9BYD5 112 aa5.3□□□□□ -1.56
LIMS1-203ENST00000393310 MXRA5Q9NR99 2828 aa5.3□□□□□ -1.56
LIMS1-203ENST00000393310 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.3□□□□□ -1.56
LIMS1-203ENST00000393310 IGKV2-29A2NJV5 120 aaPredicted RBP5.3□□□□□ -1.56
LIMS1-203ENST00000393310 PCOTHQ58A44 107 aa5.3□□□□□ -1.56
LIMS1-203ENST00000393310 NOTCH2NLQ7Z3S9 236 aa5.3□□□□□ -1.56
LIMS1-203ENST00000393310 LOC110117498A0A087WWA1 95 aa5.3□□□□□ -1.56
LIMS1-203ENST00000393310 ROMO1P60602 79 aa5.29□□□□□ -1.56
LIMS1-203ENST00000393310 LINC00575Q6W349 94 aa5.28□□□□□ -1.56
LIMS1-203ENST00000393310 CRIP1P50238 77 aa5.28□□□□□ -1.56
LIMS1-203ENST00000393310 KRTAP10-1P60331 282 aa5.27□□□□□ -1.57
LIMS1-203ENST00000393310 FLG2Q5D862 2391 aaPredicted RBP5.27□□□□□ -1.57
LIMS1-203ENST00000393310 GAS8-AS1O95177 125 aa5.27□□□□□ -1.57
LIMS1-203ENST00000393310 LINC01558Q9Y6Z2 57 aa5.27□□□□□ -1.57
LIMS1-203ENST00000393310 FRAS1Q86XX4 4008 aa5.27□□□□□ -1.57
LIMS1-203ENST00000393310 PDZD2O15018 2839 aa5.26□□□□□ -1.57
LIMS1-203ENST00000393310 IGLV7-46A0A075B6I9 117 aa5.26□□□□□ -1.57
LIMS1-203ENST00000393310 TLX1NBP0CAT3 122 aa5.26□□□□□ -1.57
LIMS1-203ENST00000393310 LINC00242Q5T6M2 205 aa5.26□□□□□ -1.57
LIMS1-203ENST00000393310 GIG44P09565 113 aaPredicted RBP5.25□□□□□ -1.57
LIMS1-203ENST00000393310 LINC00304Q8N9R0 145 aa5.25□□□□□ -1.57
LIMS1-203ENST00000393310 DNAH9Q9NYC9 4486 aa5.25□□□□□ -1.57
LIMS1-203ENST00000393310 CIRBP-AS1Q8TBR5 109 aa5.25□□□□□ -1.57
LIMS1-203ENST00000393310 C22orf24Q9Y442 160 aa5.25□□□□□ -1.57
LIMS1-203ENST00000393310 OTOGQ6ZRI0 2925 aa5.25□□□□□ -1.57
LIMS1-203ENST00000393310 LINC00167Q96N53 147 aa5.25□□□□□ -1.57
LIMS1-203ENST00000393310 A0A087X002 238 aa5.25□□□□□ -1.57
LIMS1-203ENST00000393310 M0R2T5 61 aa5.25□□□□□ -1.57
LIMS1-203ENST00000393310 POLR2KP53803 58 aaKnown RBP5.24□□□□□ -1.57
LIMS1-203ENST00000393310 KRTAP10-2P60368 255 aa5.24□□□□□ -1.57
LIMS1-203ENST00000393310 TSHBP01222 138 aa5.24□□□□□ -1.57
LIMS1-203ENST00000393310 CNBPP62633 177 aaKnown RBP5.24□□□□□ -1.57
LIMS1-203ENST00000393310 IGLV7-43P04211 117 aa5.23□□□□□ -1.57
LIMS1-203ENST00000393310 FAT2Q9NYQ8 4349 aa5.23□□□□□ -1.57
LIMS1-203ENST00000393310 AMELXQ99217 191 aa5.23□□□□□ -1.57
LIMS1-203ENST00000393310 NDUFAF8A1L188 74 aa5.23□□□□□ -1.57
LIMS1-203ENST00000393310 PRKDCP78527 4128 aaKnown RBP5.22□□□□□ -1.57
LIMS1-203ENST00000393310 LINC00959A0A1B0GUT2 108 aa5.22□□□□□ -1.57
LIMS1-203ENST00000393310 C11orf21Q9P2W6 132 aa5.21□□□□□ -1.57
LIMS1-203ENST00000393310 TENM2Q9NT68 2774 aa5.2□□□□□ -1.58
LIMS1-203ENST00000393310 ADM2Q7Z4H4 148 aa5.2□□□□□ -1.58
LIMS1-203ENST00000393310 GVQW2A0A096LPI5 108 aaPredicted RBP5.19□□□□□ -1.58
LIMS1-203ENST00000393310 CRIPTQ9P021 101 aa5.19□□□□□ -1.58
LIMS1-203ENST00000393310 DNAH6Q9C0G6 4158 aa5.19□□□□□ -1.58
LIMS1-203ENST00000393310 A0A1B0GVY2 172 aa5.18□□□□□ -1.58
LIMS1-203ENST00000393310 SPINK7P58062 85 aa5.18□□□□□ -1.58
LIMS1-203ENST00000393310 OBSCN-AS1Q96MR7 158 aa5.16□□□□□ -1.58
LIMS1-203ENST00000393310 TP53AIP1Q9HCN2 124 aa5.16□□□□□ -1.58
LIMS1-203ENST00000393310 PLAC8Q9NZF1 115 aa5.16□□□□□ -1.58
LIMS1-203ENST00000393310 Q8NBF4 154 aa5.16□□□□□ -1.58
LIMS1-203ENST00000393310 KMT2AQ03164 3969 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 218.7 ms