RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 UBE2AP49459 152 aa11.34□□□□□ -0.59
CCDC88C-203ENST00000389856 SMIM20Q8N5G0 67 aa11.32□□□□□ -0.6
CCDC88C-203ENST00000389856 DEFB105AQ8NG35 78 aa11.31□□□□□ -0.6
CCDC88C-203ENST00000389856 PRLHP81277 87 aa11.3□□□□□ -0.6
CCDC88C-203ENST00000389856 SS18L2Q9UHA2 77 aa11.29□□□□□ -0.6
CCDC88C-203ENST00000389856 Q6ZSA8 131 aa11.28□□□□□ -0.6
CCDC88C-203ENST00000389856 HIGD2AQ9BW72 106 aa11.28□□□□□ -0.6
CCDC88C-203ENST00000389856 KRTAP11-1Q8IUC1 163 aa11.27□□□□□ -0.6
CCDC88C-203ENST00000389856 HECTD4Q9Y4D8 3996 aa11.27□□□□□ -0.6
CCDC88C-203ENST00000389856 NREPQ16612 68 aa11.27□□□□□ -0.61
CCDC88C-203ENST00000389856 KRTAP10-1P60331 282 aa11.26□□□□□ -0.61
CCDC88C-203ENST00000389856 FRAS1Q86XX4 4008 aa11.25□□□□□ -0.61
CCDC88C-203ENST00000389856 CIRBP-AS1Q8TBR5 109 aa11.24□□□□□ -0.61
CCDC88C-203ENST00000389856 C1orf137Q5JT78 98 aa11.24□□□□□ -0.61
CCDC88C-203ENST00000389856 PSORS1C2Q9UIG4 136 aa11.24□□□□□ -0.61
CCDC88C-203ENST00000389856 TRAV7A0A075B6U4 112 aa11.23□□□□□ -0.61
CCDC88C-203ENST00000389856 ERC2-IT1O76042 136 aa11.23□□□□□ -0.61
CCDC88C-203ENST00000389856 SCXQ7RTU7 201 aa11.22□□□□□ -0.61
CCDC88C-203ENST00000389856 ST20-AS1Q8NBB2 130 aa11.22□□□□□ -0.61
CCDC88C-203ENST00000389856 Q8NBF4 154 aa11.22□□□□□ -0.61
CCDC88C-203ENST00000389856 FAM30AQ9NZY2 134 aa11.22□□□□□ -0.61
CCDC88C-203ENST00000389856 F8WEM9 126 aa11.21□□□□□ -0.61
CCDC88C-203ENST00000389856 KRTAP13-1Q8IUC0 172 aa11.21□□□□□ -0.61
CCDC88C-203ENST00000389856 SPRR4Q96PI1 79 aa11.21□□□□□ -0.61
CCDC88C-203ENST00000389856 ZNF706Q9Y5V0 76 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-203ENST00000389856 RYR2Q92736 4967 aa11.2□□□□□ -0.62
CCDC88C-203ENST00000389856 SACSQ9NZJ4 4579 aa11.18□□□□□ -0.62
CCDC88C-203ENST00000389856 IGLV8-61A0A075B6I0 122 aa11.18□□□□□ -0.62
CCDC88C-203ENST00000389856 A0A1W2PNM2 257 aa11.18□□□□□ -0.62
CCDC88C-203ENST00000389856 BPY2O14599 106 aa11.18□□□□□ -0.62
CCDC88C-203ENST00000389856 HYDINQ4G0P3 5121 aa11.18□□□□□ -0.62
CCDC88C-203ENST00000389856 A0A1B0GVY2 172 aa11.17□□□□□ -0.62
CCDC88C-203ENST00000389856 ZNF861PO60384 105 aa11.17□□□□□ -0.62
CCDC88C-203ENST00000389856 SMIM29Q86T20 159 aa11.17□□□□□ -0.62
CCDC88C-203ENST00000389856 SPRR1BP22528 89 aa11.16□□□□□ -0.62
CCDC88C-203ENST00000389856 TMEM258P61165 79 aa11.16□□□□□ -0.62
CCDC88C-203ENST00000389856 FAT2Q9NYQ8 4349 aa11.14□□□□□ -0.63
CCDC88C-203ENST00000389856 IGLV7-43P04211 117 aa11.13□□□□□ -0.63
CCDC88C-203ENST00000389856 DNAH11Q96DT5 4516 aa11.13□□□□□ -0.63
CCDC88C-203ENST00000389856 IGKV4-1P06312 121 aa11.13□□□□□ -0.63
CCDC88C-203ENST00000389856 PKD1P98161 4303 aa11.1□□□□□ -0.63
CCDC88C-203ENST00000389856 DNAH5Q8TE73 4624 aa11.09□□□□□ -0.63
CCDC88C-203ENST00000389856 RPS28P62857 69 aaKnown RBP11.06□□□□□ -0.64
CCDC88C-203ENST00000389856 KLKP1Q107X0 134 aa11.06□□□□□ -0.64
CCDC88C-203ENST00000389856 IGFL1Q6UW32 110 aa11.06□□□□□ -0.64
CCDC88C-203ENST00000389856 LINC00483Q53H64 154 aa11.05□□□□□ -0.64
CCDC88C-203ENST00000389856 C20orf197Q8N268 126 aa11.05□□□□□ -0.64
CCDC88C-203ENST00000389856 DNAH8Q96JB1 4490 aa11.04□□□□□ -0.64
CCDC88C-203ENST00000389856 CYSTM1Q9H1C7 97 aa11.02□□□□□ -0.64
CCDC88C-203ENST00000389856 NDUFC1O43677 76 aa11.02□□□□□ -0.65
CCDC88C-203ENST00000389856 RPL37AP61513 92 aaKnown RBP11.01□□□□□ -0.65
CCDC88C-203ENST00000389856 J3KT08 172 aa11□□□□□ -0.65
CCDC88C-203ENST00000389856 Q8N9L7 120 aa11□□□□□ -0.65
CCDC88C-203ENST00000389856 OCR1Q9BZK8 76 aa10.98□□□□□ -0.65
CCDC88C-203ENST00000389856 DSCR10P59022 87 aa10.97□□□□□ -0.65
CCDC88C-203ENST00000389856 EPPK1P58107 5090 aaKnown RBP10.97□□□□□ -0.65
CCDC88C-203ENST00000389856 IGLV9-49A0A0B4J1Y8 123 aa10.93□□□□□ -0.66
CCDC88C-203ENST00000389856 H7BZZ5 65 aa10.93□□□□□ -0.66
CCDC88C-203ENST00000389856 A0A087WSZ3 146 aa10.91□□□□□ -0.66
CCDC88C-203ENST00000389856 TMEM254Q8TBM7 123 aa10.91□□□□□ -0.66
CCDC88C-203ENST00000389856 ATP5EP56381 51 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-203ENST00000389856 FAM236DA0A1B0GTK5 79 aa10.9□□□□□ -0.66
CCDC88C-203ENST00000389856 FAM236CP0DP71 79 aa10.9□□□□□ -0.66
CCDC88C-203ENST00000389856 FAM229BQ4G0N7 80 aa10.9□□□□□ -0.66
CCDC88C-203ENST00000389856 SPINK6Q6UWN8 80 aa10.89□□□□□ -0.67
CCDC88C-203ENST00000389856 K7EQZ3 153 aa10.88□□□□□ -0.67
CCDC88C-203ENST00000389856 HCG22E2RYF7 251 aa10.87□□□□□ -0.67
CCDC88C-203ENST00000389856 MOBPQ13875 183 aa10.87□□□□□ -0.67
CCDC88C-203ENST00000389856 A0A0U1RQV1 116 aa10.86□□□□□ -0.67
CCDC88C-203ENST00000389856 SNURFQ9Y675 71 aa10.86□□□□□ -0.67
CCDC88C-203ENST00000389856 SSBP3-AS1Q7Z2R9 100 aa10.85□□□□□ -0.67
CCDC88C-203ENST00000389856 A0A0G2JQZ4 141 aa10.84□□□□□ -0.67
CCDC88C-203ENST00000389856 SMR3BP02814 79 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-203ENST00000389856 SRRM2Q9UQ35 2752 aaKnown RBP10.84□□□□□ -0.67
CCDC88C-203ENST00000389856 CDK2AP2O75956 126 aa10.84□□□□□ -0.67
CCDC88C-203ENST00000389856 LRP1BQ9NZR2 4599 aa10.83□□□□□ -0.68
CCDC88C-203ENST00000389856 ANAPC11Q9NYG5 84 aa10.83□□□□□ -0.68
CCDC88C-203ENST00000389856 PKHD1P08F94 4074 aa10.82□□□□□ -0.68
CCDC88C-203ENST00000389856 BIRC6Q9NR09 4857 aa10.82□□□□□ -0.68
CCDC88C-203ENST00000389856 PLA2G1BP04054 148 aaKnown RBP10.82□□□□□ -0.68
CCDC88C-203ENST00000389856 LINC00472Q9H8W2 130 aa10.82□□□□□ -0.68
CCDC88C-203ENST00000389856 DYNC1H1Q14204 4646 aaKnown RBP10.82□□□□□ -0.68
CCDC88C-203ENST00000389856 SERP1Q9Y6X1 66 aa10.81□□□□□ -0.68
CCDC88C-203ENST00000389856 FAM229AH3BQW9 127 aa10.8□□□□□ -0.68
CCDC88C-203ENST00000389856 C5orf47Q569G3 176 aa10.8□□□□□ -0.68
CCDC88C-203ENST00000389856 A8MWP4 228 aa10.8□□□□□ -0.68
CCDC88C-203ENST00000389856 PRR15Q8IV56 129 aa10.79□□□□□ -0.68
CCDC88C-203ENST00000389856 CD164Q04900 197 aa10.78□□□□□ -0.68
CCDC88C-203ENST00000389856 KRTAP29-1A8MX34 341 aaPredicted RBP10.74□□□□□ -0.69
CCDC88C-203ENST00000389856 KRTAP1-4P0C5Y4 121 aa10.74□□□□□ -0.69
CCDC88C-203ENST00000389856 NDUFB1O75438 58 aa10.73□□□□□ -0.69
CCDC88C-203ENST00000389856 DEFB116Q30KQ4 102 aa10.73□□□□□ -0.69
CCDC88C-203ENST00000389856 A0A087X002 238 aa10.72□□□□□ -0.69
CCDC88C-203ENST00000389856 CASC2Q6XLA1 102 aa10.71□□□□□ -0.69
CCDC88C-203ENST00000389856 KRTAP10-4P60372 401 aaPredicted RBP10.7□□□□□ -0.7
CCDC88C-203ENST00000389856 HRCT1Q6UXD1 115 aa10.7□□□□□ -0.7
CCDC88C-203ENST00000389856 ZCCHC13Q8WW36 166 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-203ENST00000389856 H3BPC8 53 aa10.69□□□□□ -0.7
CCDC88C-203ENST00000389856 KRTAP13-2Q52LG2 175 aa10.69□□□□□ -0.7
CCDC88C-203ENST00000389856 WFDC13Q8IUB5 93 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms