RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 PSCAO43653 123 aa11.28□□□□□ -0.6
SQSTM1-202ENST00000389805 HCG22E2RYF7 251 aa11.28□□□□□ -0.6
SQSTM1-202ENST00000389805 TNP2Q05952 138 aa11.28□□□□□ -0.6
SQSTM1-202ENST00000389805 CSMD3Q7Z407 3707 aa11.27□□□□□ -0.6
SQSTM1-202ENST00000389805 DHRS4-AS1Q9P1J3 65 aa11.26□□□□□ -0.61
SQSTM1-202ENST00000389805 DNAH10Q8IVF4 4471 aa11.26□□□□□ -0.61
SQSTM1-202ENST00000389805 KRTAP7-1Q8IUC3 87 aa11.25□□□□□ -0.61
SQSTM1-202ENST00000389805 UBE2BP63146 152 aa11.24□□□□□ -0.61
SQSTM1-202ENST00000389805 LINC00208Q96KT6 92 aa11.24□□□□□ -0.61
SQSTM1-202ENST00000389805 SPRR4Q96PI1 79 aa11.24□□□□□ -0.61
SQSTM1-202ENST00000389805 CYP4F30PQ9H0H9 118 aa11.23□□□□□ -0.61
SQSTM1-202ENST00000389805 RPL37AP61513 92 aaKnown RBP11.22□□□□□ -0.61
SQSTM1-202ENST00000389805 KRTAP1-5Q9BYS1 174 aa11.21□□□□□ -0.62
SQSTM1-202ENST00000389805 KRTAP4-16G5E9R7 235 aaPredicted RBP11.2□□□□□ -0.62
SQSTM1-202ENST00000389805 TLX1NBP0CAT3 122 aa11.2□□□□□ -0.62
SQSTM1-202ENST00000389805 LINC00476Q8WZB0 136 aa11.19□□□□□ -0.62
SQSTM1-202ENST00000389805 IGLV1-50A0A075B6I6 118 aa11.19□□□□□ -0.62
SQSTM1-202ENST00000389805 A0A1B0GW54 56 aa11.19□□□□□ -0.62
SQSTM1-202ENST00000389805 Q5VV11 94 aa11.19□□□□□ -0.62
SQSTM1-202ENST00000389805 MP68P56378 58 aa11.19□□□□□ -0.62
SQSTM1-202ENST00000389805 B9D2Q9BPU9 175 aa11.19□□□□□ -0.62
SQSTM1-202ENST00000389805 CHKB-CPT1BH3BT56 60 aa11.17□□□□□ -0.62
SQSTM1-202ENST00000389805 DNAH9Q9NYC9 4486 aa11.17□□□□□ -0.62
SQSTM1-202ENST00000389805 A0A087WSZ3 146 aa11.16□□□□□ -0.62
SQSTM1-202ENST00000389805 NDUFB1O75438 58 aa11.15□□□□□ -0.62
SQSTM1-202ENST00000389805 DNAH7Q8WXX0 4024 aa11.15□□□□□ -0.62
SQSTM1-202ENST00000389805 SPTSSBQ8NFR3 76 aa11.14□□□□□ -0.63
SQSTM1-202ENST00000389805 IGFL1Q6UW32 110 aa11.13□□□□□ -0.63
SQSTM1-202ENST00000389805 PLA2G2DQ9UNK4 145 aa11.13□□□□□ -0.63
SQSTM1-202ENST00000389805 SRRM2Q9UQ35 2752 aaKnown RBP11.13□□□□□ -0.63
SQSTM1-202ENST00000389805 SPRR1AP35321 89 aa11.13□□□□□ -0.63
SQSTM1-202ENST00000389805 PRR15LQ9BU68 103 aa11.13□□□□□ -0.63
SQSTM1-202ENST00000389805 MRPL55Q7Z7F7 128 aaKnown RBP11.12□□□□□ -0.63
SQSTM1-202ENST00000389805 IGKV2-24A0A0C4DH68 120 aa11.12□□□□□ -0.63
SQSTM1-202ENST00000389805 H0Y9P7 68 aa11.1□□□□□ -0.63
SQSTM1-202ENST00000389805 MDFIQ99750 246 aa11.1□□□□□ -0.63
SQSTM1-202ENST00000389805 Q8N9P0 234 aaPredicted RBP11.1□□□□□ -0.63
SQSTM1-202ENST00000389805 IGLV5-37A0A075B6J1 123 aa11.1□□□□□ -0.63
SQSTM1-202ENST00000389805 C16orf90A8MZG2 172 aa11.09□□□□□ -0.63
SQSTM1-202ENST00000389805 PRLHP81277 87 aa11.08□□□□□ -0.64
SQSTM1-202ENST00000389805 A0A096LNI7 61 aa11.07□□□□□ -0.64
SQSTM1-202ENST00000389805 UBE2DNLQ8IWF7 75 aa11.07□□□□□ -0.64
SQSTM1-202ENST00000389805 UBE2AP49459 152 aa11.04□□□□□ -0.64
SQSTM1-202ENST00000389805 REG3GQ6UW15 175 aa11.04□□□□□ -0.64
SQSTM1-202ENST00000389805 CASC2Q6XLA1 102 aa11.04□□□□□ -0.64
SQSTM1-202ENST00000389805 APLNQ9ULZ1 77 aa11.04□□□□□ -0.64
SQSTM1-202ENST00000389805 CHTF8P0CG12 524 aa11.02□□□□□ -0.64
SQSTM1-202ENST00000389805 KRTAP29-1A8MX34 341 aaPredicted RBP11.02□□□□□ -0.65
SQSTM1-202ENST00000389805 CD164Q04900 197 aa11.01□□□□□ -0.65
SQSTM1-202ENST00000389805 A6NED7 52 aa11.01□□□□□ -0.65
SQSTM1-202ENST00000389805 LIMD2Q9BT23 127 aa11.01□□□□□ -0.65
SQSTM1-202ENST00000389805 LCA10Q71F78 164 aa11.01□□□□□ -0.65
SQSTM1-202ENST00000389805 PLECQ15149 4684 aaKnown RBP11□□□□□ -0.65
SQSTM1-202ENST00000389805 CNBPP62633 177 aaKnown RBP10.99□□□□□ -0.65
SQSTM1-202ENST00000389805 KRTAP11-1Q8IUC1 163 aa10.98□□□□□ -0.65
SQSTM1-202ENST00000389805 SPANXA2-OT1Q8N9U9 137 aa10.97□□□□□ -0.65
SQSTM1-202ENST00000389805 PCOTHQ58A44 107 aa10.97□□□□□ -0.65
SQSTM1-202ENST00000389805 COA5Q86WW8 74 aa10.96□□□□□ -0.66
SQSTM1-202ENST00000389805 PHF5AQ7RTV0 110 aaKnown RBP10.95□□□□□ -0.66
SQSTM1-202ENST00000389805 KTN1-AS1Q86SY8 53 aa10.95□□□□□ -0.66
SQSTM1-202ENST00000389805 H0Y9J4 135 aa10.93□□□□□ -0.66
SQSTM1-202ENST00000389805 C9orf163Q8N9P6 203 aa10.93□□□□□ -0.66
SQSTM1-202ENST00000389805 RBM12B-AS1Q9P1G2 102 aa10.93□□□□□ -0.66
SQSTM1-202ENST00000389805 DYNC2H1Q8NCM8 4307 aaKnown RBP10.91□□□□□ -0.66
SQSTM1-202ENST00000389805 SPAG11AQ6PDA7 123 aa10.9□□□□□ -0.66
SQSTM1-202ENST00000389805 PRKDCP78527 4128 aaKnown RBP10.89□□□□□ -0.67
SQSTM1-202ENST00000389805 A8MWP4 228 aa10.89□□□□□ -0.67
SQSTM1-202ENST00000389805 PANO1I0J062 215 aa10.89□□□□□ -0.67
SQSTM1-202ENST00000389805 Q75L30 129 aa10.89□□□□□ -0.67
SQSTM1-202ENST00000389805 H3BPC8 53 aa10.88□□□□□ -0.67
SQSTM1-202ENST00000389805 STARD9Q9P2P6 4700 aa10.88□□□□□ -0.67
SQSTM1-202ENST00000389805 ATP11AUNQ6ZP68 121 aa10.88□□□□□ -0.67
SQSTM1-202ENST00000389805 NBDYA0A0U1RRE5 68 aa10.87□□□□□ -0.67
SQSTM1-202ENST00000389805 IGLV8-61A0A075B6I0 122 aa10.86□□□□□ -0.67
SQSTM1-202ENST00000389805 LINC00472Q9H8W2 130 aa10.85□□□□□ -0.67
SQSTM1-202ENST00000389805 C14orf177Q52M58 125 aa10.84□□□□□ -0.67
SQSTM1-202ENST00000389805 IGLV7-46A0A075B6I9 117 aa10.83□□□□□ -0.68
SQSTM1-202ENST00000389805 LOC101927531A0A1B0GV80 90 aa10.83□□□□□ -0.68
SQSTM1-202ENST00000389805 A6NN06 94 aa10.83□□□□□ -0.68
SQSTM1-202ENST00000389805 Q6ZRN7 208 aaPredicted RBP10.82□□□□□ -0.68
SQSTM1-202ENST00000389805 MMP24-AS1A0A0U1RRL7 71 aa10.82□□□□□ -0.68
SQSTM1-202ENST00000389805 KMT2AQ03164 3969 aa10.81□□□□□ -0.68
SQSTM1-202ENST00000389805 TGP01266 2768 aa10.8□□□□□ -0.68
SQSTM1-202ENST00000389805 CDC42SE1Q9NRR8 79 aa10.79□□□□□ -0.68
SQSTM1-202ENST00000389805 NUPR2A6NF83 97 aa10.79□□□□□ -0.68
SQSTM1-202ENST00000389805 MEGF8Q7Z7M0 2845 aa10.78□□□□□ -0.68
SQSTM1-202ENST00000389805 SPINK7P58062 85 aa10.77□□□□□ -0.68
SQSTM1-202ENST00000389805 MOBPQ13875 183 aa10.77□□□□□ -0.69
SQSTM1-202ENST00000389805 NDUFS5O43920 106 aa10.77□□□□□ -0.69
SQSTM1-202ENST00000389805 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.76□□□□□ -0.69
SQSTM1-202ENST00000389805 VPS13DQ5THJ4 4388 aa10.74□□□□□ -0.69
SQSTM1-202ENST00000389805 LINC01558Q9Y6Z2 57 aa10.72□□□□□ -0.69
SQSTM1-202ENST00000389805 DNHD1Q96M86 4753 aa10.71□□□□□ -0.69
SQSTM1-202ENST00000389805 IGLV9-49A0A0B4J1Y8 123 aa10.69□□□□□ -0.7
SQSTM1-202ENST00000389805 HRES1P13985 223 aa10.69□□□□□ -0.7
SQSTM1-202ENST00000389805 C7orf65Q6ZTY9 151 aa10.69□□□□□ -0.7
SQSTM1-202ENST00000389805 HECTD4Q9Y4D8 3996 aa10.69□□□□□ -0.7
SQSTM1-202ENST00000389805 A0A087WTM6 91 aa10.68□□□□□ -0.7
SQSTM1-202ENST00000389805 FRAS1Q86XX4 4008 aa10.67□□□□□ -0.7
SQSTM1-202ENST00000389805 IGHV6-1A0A0B4J1U7 121 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms