RNA–Protein interactions for RNA: ENST00000382004.7

RFX3-204, Transcript of regulatory factor X3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFX3, Length 9,307 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-204ENST00000382004 LINC00472Q9H8W2 130 aa3.53□□□□□ -1.84
RFX3-204ENST00000382004 DMBT1Q9UGM3 2413 aaPredicted RBP3.52□□□□□ -1.85
RFX3-204ENST00000382004 PRRC2CQ9Y520 2896 aaKnown RBP3.5□□□□□ -1.85
RFX3-204ENST00000382004 HECTD1Q9ULT8 2610 aa3.5□□□□□ -1.85
RFX3-204ENST00000382004 KRTAP26-1Q6PEX3 210 aa3.49□□□□□ -1.85
RFX3-204ENST00000382004 SPRR1AP35321 89 aa3.49□□□□□ -1.85
RFX3-204ENST00000382004 ATRQ13535 2644 aa3.49□□□□□ -1.85
RFX3-204ENST00000382004 KRTAP1-3Q8IUG1 177 aa3.48□□□□□ -1.85
RFX3-204ENST00000382004 Q6ZR54 194 aa3.48□□□□□ -1.85
RFX3-204ENST00000382004 OXTP01178 125 aa3.46□□□□□ -1.85
RFX3-204ENST00000382004 KRTAP1-1Q07627 177 aa3.46□□□□□ -1.85
RFX3-204ENST00000382004 NDUFAF8A1L188 74 aa3.46□□□□□ -1.86
RFX3-204ENST00000382004 PANO1I0J062 215 aa3.46□□□□□ -1.86
RFX3-204ENST00000382004 MAST4O15021 2626 aa3.46□□□□□ -1.86
RFX3-204ENST00000382004 SPRR1BP22528 89 aa3.46□□□□□ -1.86
RFX3-204ENST00000382004 KRTAP10-1P60331 282 aa3.46□□□□□ -1.86
RFX3-204ENST00000382004 AKAP13Q12802 2813 aa3.45□□□□□ -1.86
RFX3-204ENST00000382004 A8MU10 97 aa3.45□□□□□ -1.86
RFX3-204ENST00000382004 KRTAP25-1Q3LHN0 102 aa3.45□□□□□ -1.86
RFX3-204ENST00000382004 CFAP46Q8IYW2 2715 aa3.45□□□□□ -1.86
RFX3-204ENST00000382004 ASB16-AS1Q495Z4 193 aa3.44□□□□□ -1.86
RFX3-204ENST00000382004 A8MUU9 505 aa3.44□□□□□ -1.86
RFX3-204ENST00000382004 KRTAP10-2P60368 255 aa3.44□□□□□ -1.86
RFX3-204ENST00000382004 C10orf95Q9H7T3 257 aa3.43□□□□□ -1.86
RFX3-204ENST00000382004 STAB1Q9NY15 2570 aa3.43□□□□□ -1.86
RFX3-204ENST00000382004 KRTAP1-5Q9BYS1 174 aa3.42□□□□□ -1.86
RFX3-204ENST00000382004 NBEAL1Q6ZS30 2694 aa3.42□□□□□ -1.86
RFX3-204ENST00000382004 FLNBO75369 2602 aaKnown RBP3.4□□□□□ -1.86
RFX3-204ENST00000382004 STAB2Q8WWQ8 2551 aa3.4□□□□□ -1.87
RFX3-204ENST00000382004 ITPR3Q14573 2671 aa3.39□□□□□ -1.87
RFX3-204ENST00000382004 CEP350Q5VT06 3117 aa3.39□□□□□ -1.87
RFX3-204ENST00000382004 A0A087X002 238 aa3.39□□□□□ -1.87
RFX3-204ENST00000382004 FLNAP21333 2647 aaKnown RBP3.39□□□□□ -1.87
RFX3-204ENST00000382004 LCE6AA0A183 80 aa3.39□□□□□ -1.87
RFX3-204ENST00000382004 NOTCH2NLQ7Z3S9 236 aa3.38□□□□□ -1.87
RFX3-204ENST00000382004 TNP1P09430 55 aa3.38□□□□□ -1.87
RFX3-204ENST00000382004 A6NN06 94 aa3.36□□□□□ -1.87
RFX3-204ENST00000382004 EP400Q96L91 3159 aa3.36□□□□□ -1.87
RFX3-204ENST00000382004 KRTAP29-1A8MX34 341 aaPredicted RBP3.36□□□□□ -1.87
RFX3-204ENST00000382004 C5orf42Q9H799 3197 aa3.36□□□□□ -1.87
RFX3-204ENST00000382004 CHD6Q8TD26 2715 aa3.35□□□□□ -1.87
RFX3-204ENST00000382004 CENPEQ02224 2701 aa3.35□□□□□ -1.87
RFX3-204ENST00000382004 KRTAP4-16G5E9R7 235 aaPredicted RBP3.31□□□□□ -1.88
RFX3-204ENST00000382004 TEX15Q9BXT5 2789 aa3.31□□□□□ -1.88
RFX3-204ENST00000382004 HELZ2Q9BYK8 2649 aaKnown RBP3.29□□□□□ -1.88
RFX3-204ENST00000382004 KRTAP10-8P60410 259 aa3.29□□□□□ -1.88
RFX3-204ENST00000382004 GOLGB1Q14789 3259 aaKnown RBP3.28□□□□□ -1.88
RFX3-204ENST00000382004 UNC79Q9P2D8 2635 aa3.28□□□□□ -1.88
RFX3-204ENST00000382004 COL6A5A8TX70 2615 aa3.27□□□□□ -1.89
RFX3-204ENST00000382004 KRTAP11-1Q8IUC1 163 aa3.27□□□□□ -1.89
RFX3-204ENST00000382004 NOTCH1P46531 2555 aa3.27□□□□□ -1.89
RFX3-204ENST00000382004 DNAH12Q6ZR08 3092 aa3.27□□□□□ -1.89
RFX3-204ENST00000382004 RPS29P62273 56 aaKnown RBP3.25□□□□□ -1.89
RFX3-204ENST00000382004 CFAP54Q96N23 3096 aa3.25□□□□□ -1.89
RFX3-204ENST00000382004 A0A0C4DFX4 3053 aa3.25□□□□□ -1.89
RFX3-204ENST00000382004 A0A1B0GVY2 172 aa3.24□□□□□ -1.89
RFX3-204ENST00000382004 PCNTO95613 3336 aa3.23□□□□□ -1.89
RFX3-204ENST00000382004 TEP1Q99973 2627 aaKnown RBP3.23□□□□□ -1.89
RFX3-204ENST00000382004 KRTAP13-2Q52LG2 175 aa3.22□□□□□ -1.89
RFX3-204ENST00000382004 PP632Q6XCG6 107 aa3.22□□□□□ -1.89
RFX3-204ENST00000382004 P0C880 135 aa3.22□□□□□ -1.89
RFX3-204ENST00000382004 GCN1Q92616 2671 aaKnown RBP3.21□□□□□ -1.9
RFX3-204ENST00000382004 Q6ZRN7 208 aaPredicted RBP3.2□□□□□ -1.9
RFX3-204ENST00000382004 BAHCC1Q9P281 2608 aa3.2□□□□□ -1.9
RFX3-204ENST00000382004 SETXQ7Z333 2677 aaKnown RBP3.19□□□□□ -1.9
RFX3-204ENST00000382004 KRTAP7-1Q8IUC3 87 aa3.16□□□□□ -1.9
RFX3-204ENST00000382004 NBEAL2Q6ZNJ1 2754 aa3.16□□□□□ -1.9
RFX3-204ENST00000382004 UTRNP46939 3433 aa3.16□□□□□ -1.9
RFX3-204ENST00000382004 NSD1Q96L73 2696 aaPredicted RBP3.16□□□□□ -1.9
RFX3-204ENST00000382004 IGSF10Q6WRI0 2623 aa3.16□□□□□ -1.9
RFX3-204ENST00000382004 FREM2Q5SZK8 3169 aa3.15□□□□□ -1.9
RFX3-204ENST00000382004 LAMA2P24043 3122 aaKnown RBP3.15□□□□□ -1.91
RFX3-204ENST00000382004 KRTAP10-10P60014 251 aa3.15□□□□□ -1.91
RFX3-204ENST00000382004 PRO2289Q9P1D8 64 aa3.13□□□□□ -1.91
RFX3-204ENST00000382004 KRTAP13-1Q8IUC0 172 aa3.13□□□□□ -1.91
RFX3-204ENST00000382004 H0YAA0 97 aa3.12□□□□□ -1.91
RFX3-204ENST00000382004 APCP25054 2843 aa3.12□□□□□ -1.91
RFX3-204ENST00000382004 KMT2BQ9UMN6 2715 aaPredicted RBP3.11□□□□□ -1.91
RFX3-204ENST00000382004 FRYQ5TBA9 3013 aa3.11□□□□□ -1.91
RFX3-204ENST00000382004 XP32Q5T750 250 aa3.09□□□□□ -1.91
RFX3-204ENST00000382004 ITPR2Q14571 2701 aa3.09□□□□□ -1.91
RFX3-204ENST00000382004 MGAQ8IWI9 3026 aa3.09□□□□□ -1.91
RFX3-204ENST00000382004 ZNF292O60281 2723 aa3.08□□□□□ -1.92
RFX3-204ENST00000382004 UBR5O95071 2799 aaPredicted RBP3.06□□□□□ -1.92
RFX3-204ENST00000382004 CRYBG3Q68DQ2 2970 aa3.05□□□□□ -1.92
RFX3-204ENST00000382004 TRIOO75962 3097 aa3.05□□□□□ -1.92
RFX3-204ENST00000382004 TRANK1O15050 2925 aa3.04□□□□□ -1.92
RFX3-204ENST00000382004 MAP1AP78559 2803 aaPredicted RBP3.04□□□□□ -1.92
RFX3-204ENST00000382004 REV3LO60673 3130 aa3.03□□□□□ -1.92
RFX3-204ENST00000382004 CELSR3Q9NYQ7 3312 aa3.01□□□□□ -1.93
RFX3-204ENST00000382004 UTP20O75691 2785 aaKnown RBP3.01□□□□□ -1.93
RFX3-204ENST00000382004 KALRNO60229 2985 aa3.01□□□□□ -1.93
RFX3-204ENST00000382004 ITPR1Q14643 2758 aa3.01□□□□□ -1.93
RFX3-204ENST00000382004 DSPP15924 2871 aaKnown RBP3□□□□□ -1.93
RFX3-204ENST00000382004 ASH1LQ9NR48 2969 aaKnown RBP3□□□□□ -1.93
RFX3-204ENST00000382004 TPRXLQ17RH7 258 aa3□□□□□ -1.93
RFX3-204ENST00000382004 WDFY4Q6ZS81 3184 aa3□□□□□ -1.93
RFX3-204ENST00000382004 KRTAP12-2P59991 146 aa2.99□□□□□ -1.93
RFX3-204ENST00000382004 PRUNE2Q8WUY3 3088 aa2.99□□□□□ -1.93
RFX3-204ENST00000382004 CHD7Q9P2D1 2997 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms