RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 PRLHP81277 87 aa11.69□□□□□ -0.54
CCDC3-201ENST00000378825 LINC00588Q9Y4M8 146 aa11.69□□□□□ -0.54
CCDC3-201ENST00000378825 HCG22E2RYF7 251 aa11.69□□□□□ -0.54
CCDC3-201ENST00000378825 F8WDY8 70 aa11.68□□□□□ -0.54
CCDC3-201ENST00000378825 IGFL1Q6UW32 110 aa11.68□□□□□ -0.54
CCDC3-201ENST00000378825 IGLV5-37A0A075B6J1 123 aa11.68□□□□□ -0.54
CCDC3-201ENST00000378825 HUWE1Q7Z6Z7 4374 aaKnown RBP11.67□□□□□ -0.54
CCDC3-201ENST00000378825 PSPHP1O15172 72 aa11.67□□□□□ -0.54
CCDC3-201ENST00000378825 A0A087WSZ3 146 aa11.66□□□□□ -0.54
CCDC3-201ENST00000378825 A0A1B0GW54 56 aa11.66□□□□□ -0.54
CCDC3-201ENST00000378825 STAB2Q8WWQ8 2551 aa11.65□□□□□ -0.54
CCDC3-201ENST00000378825 REG3GQ6UW15 175 aa11.65□□□□□ -0.54
CCDC3-201ENST00000378825 COL7A1Q02388 2944 aa11.64□□□□□ -0.55
CCDC3-201ENST00000378825 IGKV2-24A0A0C4DH68 120 aa11.64□□□□□ -0.55
CCDC3-201ENST00000378825 C1orf195Q5TG92 126 aa11.62□□□□□ -0.55
CCDC3-201ENST00000378825 DNAH9Q9NYC9 4486 aa11.6□□□□□ -0.55
CCDC3-201ENST00000378825 TENM2Q9NT68 2774 aa11.59□□□□□ -0.55
CCDC3-201ENST00000378825 K7EIL1 84 aa11.58□□□□□ -0.56
CCDC3-201ENST00000378825 A0A096LNI7 61 aa11.58□□□□□ -0.56
CCDC3-201ENST00000378825 TRAV22A0A0B4J277 110 aa11.58□□□□□ -0.56
CCDC3-201ENST00000378825 LINC00208Q96KT6 92 aa11.58□□□□□ -0.56
CCDC3-201ENST00000378825 A8MU10 97 aa11.57□□□□□ -0.56
CCDC3-201ENST00000378825 Q1T7F1 81 aa11.57□□□□□ -0.56
CCDC3-201ENST00000378825 KRTAP11-1Q8IUC1 163 aa11.57□□□□□ -0.56
CCDC3-201ENST00000378825 A8MUN3 132 aa11.52□□□□□ -0.56
CCDC3-201ENST00000378825 CYP4F30PQ9H0H9 118 aa11.52□□□□□ -0.56
CCDC3-201ENST00000378825 KRTAP29-1A8MX34 341 aaPredicted RBP11.51□□□□□ -0.57
CCDC3-201ENST00000378825 CHTF8P0CG12 524 aa11.51□□□□□ -0.57
CCDC3-201ENST00000378825 KRTAP1-5Q9BYS1 174 aa11.51□□□□□ -0.57
CCDC3-201ENST00000378825 UBE2AP49459 152 aa11.49□□□□□ -0.57
CCDC3-201ENST00000378825 MP68P56378 58 aa11.49□□□□□ -0.57
CCDC3-201ENST00000378825 CNBPP62633 177 aaKnown RBP11.48□□□□□ -0.57
CCDC3-201ENST00000378825 H0Y9P7 68 aa11.47□□□□□ -0.57
CCDC3-201ENST00000378825 PHF5AQ7RTV0 110 aaKnown RBP11.47□□□□□ -0.57
CCDC3-201ENST00000378825 CASC2Q6XLA1 102 aa11.46□□□□□ -0.58
CCDC3-201ENST00000378825 B9D2Q9BPU9 175 aa11.46□□□□□ -0.58
CCDC3-201ENST00000378825 IGLV8-61A0A075B6I0 122 aa11.44□□□□□ -0.58
CCDC3-201ENST00000378825 PRR15Q8IV56 129 aa11.44□□□□□ -0.58
CCDC3-201ENST00000378825 DNAH7Q8WXX0 4024 aa11.44□□□□□ -0.58
CCDC3-201ENST00000378825 V9GYY9 64 aa11.43□□□□□ -0.58
CCDC3-201ENST00000378825 C16orf90A8MZG2 172 aa11.42□□□□□ -0.58
CCDC3-201ENST00000378825 NDUFB1O75438 58 aa11.42□□□□□ -0.58
CCDC3-201ENST00000378825 Q5VV11 94 aa11.4□□□□□ -0.58
CCDC3-201ENST00000378825 LINC00472Q9H8W2 130 aa11.39□□□□□ -0.59
CCDC3-201ENST00000378825 H0Y9J4 135 aa11.37□□□□□ -0.59
CCDC3-201ENST00000378825 A8MWP4 228 aa11.36□□□□□ -0.59
CCDC3-201ENST00000378825 Q8N9P0 234 aaPredicted RBP11.35□□□□□ -0.59
CCDC3-201ENST00000378825 UBE2DNLQ8IWF7 75 aa11.33□□□□□ -0.6
CCDC3-201ENST00000378825 C9orf163Q8N9P6 203 aa11.32□□□□□ -0.6
CCDC3-201ENST00000378825 PLECQ15149 4684 aaKnown RBP11.32□□□□□ -0.6
CCDC3-201ENST00000378825 PANO1I0J062 215 aa11.32□□□□□ -0.6
CCDC3-201ENST00000378825 MMP24-AS1A0A0U1RRL7 71 aa11.31□□□□□ -0.6
CCDC3-201ENST00000378825 PMAIP1Q13794 54 aa11.31□□□□□ -0.6
CCDC3-201ENST00000378825 PCOTHQ58A44 107 aa11.31□□□□□ -0.6
CCDC3-201ENST00000378825 SEC61GP60059 68 aa11.3□□□□□ -0.6
CCDC3-201ENST00000378825 CHKB-CPT1BH3BT56 60 aa11.3□□□□□ -0.6
CCDC3-201ENST00000378825 PRR15LQ9BU68 103 aa11.3□□□□□ -0.6
CCDC3-201ENST00000378825 SPANXA2-OT1Q8N9U9 137 aa11.29□□□□□ -0.6
CCDC3-201ENST00000378825 SPRR1BP22528 89 aa11.27□□□□□ -0.61
CCDC3-201ENST00000378825 MDFIQ99750 246 aa11.26□□□□□ -0.61
CCDC3-201ENST00000378825 FRAS1Q86XX4 4008 aa11.25□□□□□ -0.61
CCDC3-201ENST00000378825 IGLV9-49A0A0B4J1Y8 123 aa11.25□□□□□ -0.61
CCDC3-201ENST00000378825 COA5Q86WW8 74 aa11.25□□□□□ -0.61
CCDC3-201ENST00000378825 APLNQ9ULZ1 77 aa11.25□□□□□ -0.61
CCDC3-201ENST00000378825 H3BPC8 53 aa11.22□□□□□ -0.61
CCDC3-201ENST00000378825 CD164Q04900 197 aa11.22□□□□□ -0.61
CCDC3-201ENST00000378825 Q96NJ1 140 aa11.22□□□□□ -0.61
CCDC3-201ENST00000378825 LCA10Q71F78 164 aa11.19□□□□□ -0.62
CCDC3-201ENST00000378825 DYNC2H1Q8NCM8 4307 aaKnown RBP11.19□□□□□ -0.62
CCDC3-201ENST00000378825 SPTSSBQ8NFR3 76 aa11.19□□□□□ -0.62
CCDC3-201ENST00000378825 LIMD2Q9BT23 127 aa11.18□□□□□ -0.62
CCDC3-201ENST00000378825 IGLV7-46A0A075B6I9 117 aa11.17□□□□□ -0.62
CCDC3-201ENST00000378825 STARD9Q9P2P6 4700 aa11.17□□□□□ -0.62
CCDC3-201ENST00000378825 KRTAP13-1Q8IUC0 172 aa11.15□□□□□ -0.62
CCDC3-201ENST00000378825 ANAPC11Q9NYG5 84 aa11.15□□□□□ -0.62
CCDC3-201ENST00000378825 MOBPQ13875 183 aa11.15□□□□□ -0.62
CCDC3-201ENST00000378825 A0A087X002 238 aa11.15□□□□□ -0.63
CCDC3-201ENST00000378825 SPAG11AQ6PDA7 123 aa11.15□□□□□ -0.63
CCDC3-201ENST00000378825 NOTCH2NLQ7Z3S9 236 aa11.15□□□□□ -0.63
CCDC3-201ENST00000378825 PRKDCP78527 4128 aaKnown RBP11.14□□□□□ -0.63
CCDC3-201ENST00000378825 IGHV6-1A0A0B4J1U7 121 aa11.14□□□□□ -0.63
CCDC3-201ENST00000378825 NDUFS5O43920 106 aa11.14□□□□□ -0.63
CCDC3-201ENST00000378825 A6NED7 52 aa11.13□□□□□ -0.63
CCDC3-201ENST00000378825 DNAH8Q96JB1 4490 aa11.13□□□□□ -0.63
CCDC3-201ENST00000378825 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.12□□□□□ -0.63
CCDC3-201ENST00000378825 C8orf17Q9NRJ1 99 aa11.12□□□□□ -0.63
CCDC3-201ENST00000378825 NBDYA0A0U1RRE5 68 aa11.1□□□□□ -0.63
CCDC3-201ENST00000378825 ASB16-AS1Q495Z4 193 aa11.1□□□□□ -0.63
CCDC3-201ENST00000378825 Q75L30 129 aa11.08□□□□□ -0.64
CCDC3-201ENST00000378825 C14orf177Q52M58 125 aa11.08□□□□□ -0.64
CCDC3-201ENST00000378825 LOC101927531A0A1B0GV80 90 aa11.07□□□□□ -0.64
CCDC3-201ENST00000378825 KMT2AQ03164 3969 aa11.06□□□□□ -0.64
CCDC3-201ENST00000378825 HRES1P13985 223 aa11.04□□□□□ -0.64
CCDC3-201ENST00000378825 MEGF8Q7Z7M0 2845 aa11.04□□□□□ -0.64
CCDC3-201ENST00000378825 Q6ZR54 194 aa11.04□□□□□ -0.64
CCDC3-201ENST00000378825 Q6ZRN7 208 aaPredicted RBP11.03□□□□□ -0.64
CCDC3-201ENST00000378825 A0A1B0GVX0 72 aa11.02□□□□□ -0.64
CCDC3-201ENST00000378825 HECTD4Q9Y4D8 3996 aa11.02□□□□□ -0.65
CCDC3-201ENST00000378825 VPS13DQ5THJ4 4388 aa11.01□□□□□ -0.65
CCDC3-201ENST00000378825 TGP01266 2768 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms