RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 Q8NBF4 154 aa12.16□□□□□ -0.46
COL9A3-201ENST00000343916 NBDYA0A0U1RRE5 68 aa12.16□□□□□ -0.46
COL9A3-201ENST00000343916 MEGF8Q7Z7M0 2845 aa12.15□□□□□ -0.46
COL9A3-201ENST00000343916 LRCOL1A6NCL2 159 aa12.15□□□□□ -0.46
COL9A3-201ENST00000343916 SRRM2Q9UQ35 2752 aaKnown RBP12.15□□□□□ -0.46
COL9A3-201ENST00000343916 LINC00476Q8WZB0 136 aa12.13□□□□□ -0.47
COL9A3-201ENST00000343916 NDUFC1O43677 76 aa12.13□□□□□ -0.47
COL9A3-201ENST00000343916 NUPR2A6NF83 97 aa12.12□□□□□ -0.47
COL9A3-201ENST00000343916 C9orf163Q8N9P6 203 aa12.12□□□□□ -0.47
COL9A3-201ENST00000343916 SPRR4Q96PI1 79 aa12.11□□□□□ -0.47
COL9A3-201ENST00000343916 FP248Q71RG6 208 aaPredicted RBP12.11□□□□□ -0.47
COL9A3-201ENST00000343916 STARD9Q9P2P6 4700 aa12.1□□□□□ -0.47
COL9A3-201ENST00000343916 Q6ZRN7 208 aaPredicted RBP12.1□□□□□ -0.47
COL9A3-201ENST00000343916 OCR1Q9BZK8 76 aa12.1□□□□□ -0.47
COL9A3-201ENST00000343916 PANO1I0J062 215 aa12.1□□□□□ -0.47
COL9A3-201ENST00000343916 A0A1B0GW54 56 aa12.08□□□□□ -0.48
COL9A3-201ENST00000343916 LINC00474Q9P2X8 69 aa12.08□□□□□ -0.48
COL9A3-201ENST00000343916 IGFL1Q6UW32 110 aa12.08□□□□□ -0.48
COL9A3-201ENST00000343916 SMIM26A0A096LP01 95 aa12.07□□□□□ -0.48
COL9A3-201ENST00000343916 A0A0U1RQV1 116 aa12.05□□□□□ -0.48
COL9A3-201ENST00000343916 LINC00336Q6ZUF6 198 aa12.03□□□□□ -0.48
COL9A3-201ENST00000343916 ATP5EP56381 51 aaPredicted RBP12.03□□□□□ -0.48
COL9A3-201ENST00000343916 FAM30AQ9NZY2 134 aa12.03□□□□□ -0.48
COL9A3-201ENST00000343916 UBE2AP49459 152 aa12.02□□□□□ -0.49
COL9A3-201ENST00000343916 DSCR10P59022 87 aa12.01□□□□□ -0.49
COL9A3-201ENST00000343916 FAM229BQ4G0N7 80 aa12□□□□□ -0.49
COL9A3-201ENST00000343916 DEFB116Q30KQ4 102 aa12□□□□□ -0.49
COL9A3-201ENST00000343916 K7EQZ3 153 aa11.99□□□□□ -0.49
COL9A3-201ENST00000343916 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.99□□□□□ -0.49
COL9A3-201ENST00000343916 A0A087WSZ3 146 aa11.98□□□□□ -0.49
COL9A3-201ENST00000343916 IGLV8-61A0A075B6I0 122 aa11.97□□□□□ -0.49
COL9A3-201ENST00000343916 KRTAP21-3Q3LHN1 58 aa11.97□□□□□ -0.49
COL9A3-201ENST00000343916 KMT2AQ03164 3969 aa11.97□□□□□ -0.49
COL9A3-201ENST00000343916 H0Y9J4 135 aa11.96□□□□□ -0.49
COL9A3-201ENST00000343916 VPS13DQ5THJ4 4388 aa11.95□□□□□ -0.5
COL9A3-201ENST00000343916 MPLKIPQ8TAP9 179 aa11.94□□□□□ -0.5
COL9A3-201ENST00000343916 A0A087WTM6 91 aa11.93□□□□□ -0.5
COL9A3-201ENST00000343916 SPACA4Q8TDM5 124 aa11.93□□□□□ -0.5
COL9A3-201ENST00000343916 PKIGQ9Y2B9 76 aa11.93□□□□□ -0.5
COL9A3-201ENST00000343916 FBN3Q75N90 2809 aa11.92□□□□□ -0.5
COL9A3-201ENST00000343916 SPRR1BP22528 89 aa11.91□□□□□ -0.5
COL9A3-201ENST00000343916 PRO0628Q9UI54 55 aa11.9□□□□□ -0.5
COL9A3-201ENST00000343916 KRTAP13-1Q8IUC0 172 aa11.89□□□□□ -0.51
COL9A3-201ENST00000343916 RPL37AP61513 92 aaKnown RBP11.86□□□□□ -0.51
COL9A3-201ENST00000343916 TGP01266 2768 aa11.86□□□□□ -0.51
COL9A3-201ENST00000343916 RTL8CO15255 209 aa11.85□□□□□ -0.51
COL9A3-201ENST00000343916 DNAH2Q9P225 4427 aa11.85□□□□□ -0.51
COL9A3-201ENST00000343916 LCE6AA0A183 80 aa11.84□□□□□ -0.51
COL9A3-201ENST00000343916 HCG22E2RYF7 251 aa11.84□□□□□ -0.51
COL9A3-201ENST00000343916 HECTD4Q9Y4D8 3996 aa11.84□□□□□ -0.51
COL9A3-201ENST00000343916 Q6ZR54 194 aa11.83□□□□□ -0.52
COL9A3-201ENST00000343916 BRK1Q8WUW1 75 aa11.82□□□□□ -0.52
COL9A3-201ENST00000343916 WFDC13Q8IUB5 93 aa11.81□□□□□ -0.52
COL9A3-201ENST00000343916 FRAS1Q86XX4 4008 aa11.81□□□□□ -0.52
COL9A3-201ENST00000343916 IGLV9-49A0A0B4J1Y8 123 aa11.8□□□□□ -0.52
COL9A3-201ENST00000343916 ZCCHC13Q8WW36 166 aaKnown RBP11.78□□□□□ -0.52
COL9A3-201ENST00000343916 PSORS1C2Q9UIG4 136 aa11.77□□□□□ -0.53
COL9A3-201ENST00000343916 hDV103S1A0JD37 113 aa11.76□□□□□ -0.53
COL9A3-201ENST00000343916 PRR4Q16378 134 aa11.76□□□□□ -0.53
COL9A3-201ENST00000343916 LINC00472Q9H8W2 130 aa11.75□□□□□ -0.53
COL9A3-201ENST00000343916 C1orf64Q8NEQ6 169 aa11.75□□□□□ -0.53
COL9A3-201ENST00000343916 IGLV5-52A0A0A0MRZ9 124 aa11.73□□□□□ -0.53
COL9A3-201ENST00000343916 C1orf134Q5TEV5 83 aa11.73□□□□□ -0.53
COL9A3-201ENST00000343916 LY6G6CO95867 125 aa11.72□□□□□ -0.53
COL9A3-201ENST00000343916 ANAPC11Q9NYG5 84 aa11.72□□□□□ -0.53
COL9A3-201ENST00000343916 DNAH17Q9UFH2 4485 aa11.71□□□□□ -0.53
COL9A3-201ENST00000343916 PLAC8Q9NZF1 115 aa11.71□□□□□ -0.53
COL9A3-201ENST00000343916 PRR15Q8IV56 129 aa11.7□□□□□ -0.54
COL9A3-201ENST00000343916 DNAH8Q96JB1 4490 aa11.7□□□□□ -0.54
COL9A3-201ENST00000343916 A8MWP4 228 aa11.69□□□□□ -0.54
COL9A3-201ENST00000343916 KRTAP29-1A8MX34 341 aaPredicted RBP11.68□□□□□ -0.54
COL9A3-201ENST00000343916 LINC00483Q53H64 154 aa11.68□□□□□ -0.54
COL9A3-201ENST00000343916 CASC2Q6XLA1 102 aa11.66□□□□□ -0.54
COL9A3-201ENST00000343916 WWC2-AS2Q96NR7 200 aa11.66□□□□□ -0.54
COL9A3-201ENST00000343916 ZNF861PO60384 105 aa11.65□□□□□ -0.54
COL9A3-201ENST00000343916 MOBPQ13875 183 aa11.64□□□□□ -0.55
COL9A3-201ENST00000343916 DNAH6Q9C0G6 4158 aa11.64□□□□□ -0.55
COL9A3-201ENST00000343916 Q96NJ1 140 aa11.62□□□□□ -0.55
COL9A3-201ENST00000343916 ZNF706Q9Y5V0 76 aaPredicted RBP11.62□□□□□ -0.55
COL9A3-201ENST00000343916 LINC00208Q96KT6 92 aa11.61□□□□□ -0.55
COL9A3-201ENST00000343916 MP68P56378 58 aa11.61□□□□□ -0.55
COL9A3-201ENST00000343916 CYP4F30PQ9H0H9 118 aa11.6□□□□□ -0.55
COL9A3-201ENST00000343916 Q1T7F1 81 aa11.59□□□□□ -0.55
COL9A3-201ENST00000343916 TRAV22A0A0B4J277 110 aa11.58□□□□□ -0.56
COL9A3-201ENST00000343916 PSPHP1O15172 72 aa11.58□□□□□ -0.56
COL9A3-201ENST00000343916 KRTAP10-2P60368 255 aa11.58□□□□□ -0.56
COL9A3-201ENST00000343916 MMP24-AS1A0A0U1RRL7 71 aa11.57□□□□□ -0.56
COL9A3-201ENST00000343916 NDUFB1O75438 58 aa11.57□□□□□ -0.56
COL9A3-201ENST00000343916 H0Y9P7 68 aa11.54□□□□□ -0.56
COL9A3-201ENST00000343916 IGLV7-43P04211 117 aa11.54□□□□□ -0.56
COL9A3-201ENST00000343916 CIRBP-AS1Q8TBR5 109 aa11.52□□□□□ -0.56
COL9A3-201ENST00000343916 DNAH11Q96DT5 4516 aa11.52□□□□□ -0.57
COL9A3-201ENST00000343916 DNAH5Q8TE73 4624 aa11.52□□□□□ -0.57
COL9A3-201ENST00000343916 C1orf195Q5TG92 126 aa11.51□□□□□ -0.57
COL9A3-201ENST00000343916 ALMS1Q8TCU4 4167 aa11.49□□□□□ -0.57
COL9A3-201ENST00000343916 IGHV6-1A0A0B4J1U7 121 aa11.47□□□□□ -0.57
COL9A3-201ENST00000343916 HYDINQ4G0P3 5121 aa11.46□□□□□ -0.57
COL9A3-201ENST00000343916 A8MUN3 132 aa11.45□□□□□ -0.58
COL9A3-201ENST00000343916 C8orf17Q9NRJ1 99 aa11.45□□□□□ -0.58
COL9A3-201ENST00000343916 A0A1B0GVX0 72 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 130.6 ms