RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 TYMSOSQ8TAI1 123 aa4.12□□□□□ -1.75
VCAN-203ENST00000343200 SEC61BP60468 96 aaKnown RBP4.12□□□□□ -1.75
VCAN-203ENST00000343200 Q5VV11 94 aa4.12□□□□□ -1.75
VCAN-203ENST00000343200 FP248Q71RG6 208 aaPredicted RBP4.12□□□□□ -1.75
VCAN-203ENST00000343200 H3BNG1 76 aa4.12□□□□□ -1.75
VCAN-203ENST00000343200 LINC00315P59091 139 aa4.11□□□□□ -1.75
VCAN-203ENST00000343200 LINC00528Q8N1L1 170 aa4.11□□□□□ -1.75
VCAN-203ENST00000343200 PHF5AQ7RTV0 110 aaKnown RBP4.11□□□□□ -1.75
VCAN-203ENST00000343200 IGLV7-46A0A075B6I9 117 aa4.11□□□□□ -1.75
VCAN-203ENST00000343200 Q8NA96 180 aa4.11□□□□□ -1.75
VCAN-203ENST00000343200 PRAC1Q96KF2 57 aa4.11□□□□□ -1.75
VCAN-203ENST00000343200 Q8N9P0 234 aaPredicted RBP4.1□□□□□ -1.75
VCAN-203ENST00000343200 BOD1L1Q8NFC6 3051 aa4.09□□□□□ -1.75
VCAN-203ENST00000343200 SPINK7P58062 85 aa4.09□□□□□ -1.75
VCAN-203ENST00000343200 DMXL1Q9Y485 3027 aa4.09□□□□□ -1.75
VCAN-203ENST00000343200 C15orf56Q8N910 161 aa4.09□□□□□ -1.76
VCAN-203ENST00000343200 FAM168BA1KXE4 195 aa4.08□□□□□ -1.76
VCAN-203ENST00000343200 IGLV5-48A0A075B6I7 105 aa4.08□□□□□ -1.76
VCAN-203ENST00000343200 ADGRG4Q8IZF6 3080 aa4.08□□□□□ -1.76
VCAN-203ENST00000343200 PKD1L1Q8TDX9 2849 aa4.07□□□□□ -1.76
VCAN-203ENST00000343200 DNAH14Q0VDD8 3507 aa4.07□□□□□ -1.76
VCAN-203ENST00000343200 DSCR10P59022 87 aa4.07□□□□□ -1.76
VCAN-203ENST00000343200 C9orf163Q8N9P6 203 aa4.06□□□□□ -1.76
VCAN-203ENST00000343200 WDFY4Q6ZS81 3184 aa4.06□□□□□ -1.76
VCAN-203ENST00000343200 Q8N377 158 aa4.06□□□□□ -1.76
VCAN-203ENST00000343200 INAFM1C9JVW0 142 aa4.06□□□□□ -1.76
VCAN-203ENST00000343200 VWFP04275 2813 aa4.06□□□□□ -1.76
VCAN-203ENST00000343200 DNAH10OSP0CZ25 163 aa4.05□□□□□ -1.76
VCAN-203ENST00000343200 MXRA5Q9NR99 2828 aa4.05□□□□□ -1.76
VCAN-203ENST00000343200 FBN2P35556 2912 aa4.05□□□□□ -1.76
VCAN-203ENST00000343200 USP34Q70CQ2 3546 aa4.05□□□□□ -1.76
VCAN-203ENST00000343200 ROMO1P60602 79 aa4.05□□□□□ -1.76
VCAN-203ENST00000343200 IGLV1-50A0A075B6I6 118 aa4.04□□□□□ -1.76
VCAN-203ENST00000343200 Q8N1X5 172 aa4.04□□□□□ -1.76
VCAN-203ENST00000343200 LINC00304Q8N9R0 145 aa4.04□□□□□ -1.76
VCAN-203ENST00000343200 Q8NAQ8 132 aa4.03□□□□□ -1.76
VCAN-203ENST00000343200 SPRR4Q96PI1 79 aa4.03□□□□□ -1.76
VCAN-203ENST00000343200 C16orf95Q9H693 158 aa4.02□□□□□ -1.77
VCAN-203ENST00000343200 ATMQ13315 3056 aa4.02□□□□□ -1.77
VCAN-203ENST00000343200 COX6B2Q6YFQ2 88 aa4.02□□□□□ -1.77
VCAN-203ENST00000343200 RTL8CO15255 209 aa4.02□□□□□ -1.77
VCAN-203ENST00000343200 PRR26Q8N8Z3 221 aa4.01□□□□□ -1.77
VCAN-203ENST00000343200 A0A1W2PNU3 283 aaPredicted RBP4.01□□□□□ -1.77
VCAN-203ENST00000343200 HTTP42858 3142 aa4□□□□□ -1.77
VCAN-203ENST00000343200 TNP2Q05952 138 aa4□□□□□ -1.77
VCAN-203ENST00000343200 ZNF575Q86XF7 245 aa4□□□□□ -1.77
VCAN-203ENST00000343200 CYSTM1Q9H1C7 97 aa4□□□□□ -1.77
VCAN-203ENST00000343200 HRNRQ86YZ3 2850 aaPredicted RBP4□□□□□ -1.77
VCAN-203ENST00000343200 ZNF861PO60384 105 aa3.99□□□□□ -1.77
VCAN-203ENST00000343200 IGLV5-37A0A075B6J1 123 aa3.99□□□□□ -1.77
VCAN-203ENST00000343200 HRES1P13985 223 aa3.99□□□□□ -1.77
VCAN-203ENST00000343200 C9orf92A6NGG3 77 aa3.98□□□□□ -1.77
VCAN-203ENST00000343200 C19orf73Q9NVV2 129 aa3.98□□□□□ -1.77
VCAN-203ENST00000343200 SPTBN5Q9NRC6 3674 aaKnown RBP3.96□□□□□ -1.78
VCAN-203ENST00000343200 NBDYA0A0U1RRE5 68 aa3.96□□□□□ -1.78
VCAN-203ENST00000343200 PRR34Q9NV39 138 aa3.96□□□□□ -1.78
VCAN-203ENST00000343200 CELSR3Q9NYQ7 3312 aa3.96□□□□□ -1.78
VCAN-203ENST00000343200 WISP2O76076 250 aa3.95□□□□□ -1.78
VCAN-203ENST00000343200 CELSR1Q9NYQ6 3014 aa3.95□□□□□ -1.78
VCAN-203ENST00000343200 A0A1W2PNM2 257 aa3.94□□□□□ -1.78
VCAN-203ENST00000343200 OXTP01178 125 aa3.94□□□□□ -1.78
VCAN-203ENST00000343200 RPL37P61927 97 aaKnown RBP3.94□□□□□ -1.78
VCAN-203ENST00000343200 NBPF19A0A087WUL8 3843 aa3.93□□□□□ -1.78
VCAN-203ENST00000343200 S4R3F8 94 aa3.93□□□□□ -1.78
VCAN-203ENST00000343200 WDFY3Q8IZQ1 3526 aa3.93□□□□□ -1.78
VCAN-203ENST00000343200 TENM2Q9NT68 2774 aa3.93□□□□□ -1.78
VCAN-203ENST00000343200 COL6A3P12111 3177 aa3.93□□□□□ -1.78
VCAN-203ENST00000343200 A6NN06 94 aa3.92□□□□□ -1.78
VCAN-203ENST00000343200 UNC80Q8N2C7 3258 aa3.92□□□□□ -1.78
VCAN-203ENST00000343200 NDUFAF8A1L188 74 aa3.92□□□□□ -1.78
VCAN-203ENST00000343200 KRTAP25-1Q3LHN0 102 aa3.91□□□□□ -1.78
VCAN-203ENST00000343200 CNBPP62633 177 aaKnown RBP3.91□□□□□ -1.78
VCAN-203ENST00000343200 A0A0G2JQZ4 141 aa3.9□□□□□ -1.78
VCAN-203ENST00000343200 A0A1W2PNN7 141 aa3.9□□□□□ -1.78
VCAN-203ENST00000343200 H1FX-AS1Q4G0G2 97 aa3.9□□□□□ -1.78
VCAN-203ENST00000343200 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.9□□□□□ -1.78
VCAN-203ENST00000343200 MKI67P46013 3256 aaKnown RBP3.89□□□□□ -1.79
VCAN-203ENST00000343200 COL7A1Q02388 2944 aa3.89□□□□□ -1.79
VCAN-203ENST00000343200 A0A087X002 238 aa3.89□□□□□ -1.79
VCAN-203ENST00000343200 DMDP11532 3685 aa3.89□□□□□ -1.79
VCAN-203ENST00000343200 PSORS1C2Q9UIG4 136 aa3.88□□□□□ -1.79
VCAN-203ENST00000343200 KLK9Q2XQG4 91 aa3.88□□□□□ -1.79
VCAN-203ENST00000343200 R4GN34 69 aa3.88□□□□□ -1.79
VCAN-203ENST00000343200 SPATA8Q6RVD6 105 aa3.87□□□□□ -1.79
VCAN-203ENST00000343200 MMP24-AS1A0A0U1RRL7 71 aa3.85□□□□□ -1.79
VCAN-203ENST00000343200 GIG44P09565 113 aaPredicted RBP3.85□□□□□ -1.79
VCAN-203ENST00000343200 Q5W150 140 aa3.85□□□□□ -1.79
VCAN-203ENST00000343200 ZCCHC13Q8WW36 166 aaKnown RBP3.85□□□□□ -1.79
VCAN-203ENST00000343200 LAMA3Q16787 3333 aa3.84□□□□□ -1.79
VCAN-203ENST00000343200 TENM4Q6N022 2769 aa3.84□□□□□ -1.79
VCAN-203ENST00000343200 Q6ZR54 194 aa3.84□□□□□ -1.79
VCAN-203ENST00000343200 VCANP13611 3396 aa3.84□□□□□ -1.8
VCAN-203ENST00000343200 PLAC4Q8WY50 150 aa3.84□□□□□ -1.8
VCAN-203ENST00000343200 SPENQ96T58 3664 aaKnown RBP3.83□□□□□ -1.8
VCAN-203ENST00000343200 ASPMQ8IZT6 3477 aa3.83□□□□□ -1.8
VCAN-203ENST00000343200 CFAP47Q6ZTR5 3102 aa3.83□□□□□ -1.8
VCAN-203ENST00000343200 BRCA2P51587 3418 aa3.83□□□□□ -1.8
VCAN-203ENST00000343200 ANAPC11Q9NYG5 84 aa3.82□□□□□ -1.8
VCAN-203ENST00000343200 J3QL48 77 aa3.82□□□□□ -1.8
VCAN-203ENST00000343200 A0A096LNT2 108 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms