RNA–Protein interactions for RNA: ENST00000331462.5

HOXD1-201, Transcript of homeobox D1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD1, Length 1,975 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD1-201ENST00000331462 LINC00474Q9P2X8 69 aa14.07□□□□□ -0.16
HOXD1-201ENST00000331462 A0A087WSZ3 146 aa14.06□□□□□ -0.16
HOXD1-201ENST00000331462 UBE2AP49459 152 aa14.05□□□□□ -0.16
HOXD1-201ENST00000331462 APLNQ9ULZ1 77 aa14.05□□□□□ -0.16
HOXD1-201ENST00000331462 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.04□□□□□ -0.16
HOXD1-201ENST00000331462 KRTAP11-1Q8IUC1 163 aa14.03□□□□□ -0.16
HOXD1-201ENST00000331462 UBE2DNLQ8IWF7 75 aa14.03□□□□□ -0.16
HOXD1-201ENST00000331462 FAM229BQ4G0N7 80 aa14.02□□□□□ -0.16
HOXD1-201ENST00000331462 PHF5AQ7RTV0 110 aaKnown RBP14.02□□□□□ -0.16
HOXD1-201ENST00000331462 KRTAP21-3Q3LHN1 58 aa14.02□□□□□ -0.17
HOXD1-201ENST00000331462 PKIGQ9Y2B9 76 aa14.02□□□□□ -0.17
HOXD1-201ENST00000331462 DNAH10Q8IVF4 4471 aa14□□□□□ -0.17
HOXD1-201ENST00000331462 CHTF8P0CG12 524 aa14□□□□□ -0.17
HOXD1-201ENST00000331462 C9orf163Q8N9P6 203 aa13.99□□□□□ -0.17
HOXD1-201ENST00000331462 KRTAP29-1A8MX34 341 aaPredicted RBP13.98□□□□□ -0.17
HOXD1-201ENST00000331462 DEFB116Q30KQ4 102 aa13.97□□□□□ -0.17
HOXD1-201ENST00000331462 LINC00336Q6ZUF6 198 aa13.97□□□□□ -0.17
HOXD1-201ENST00000331462 hDV103S1A0JD37 113 aa13.96□□□□□ -0.17
HOXD1-201ENST00000331462 DNHD1Q96M86 4753 aa13.96□□□□□ -0.18
HOXD1-201ENST00000331462 LRCOL1A6NCL2 159 aa13.95□□□□□ -0.18
HOXD1-201ENST00000331462 DNAH9Q9NYC9 4486 aa13.95□□□□□ -0.18
HOXD1-201ENST00000331462 STAB2Q8WWQ8 2551 aa13.93□□□□□ -0.18
HOXD1-201ENST00000331462 WFDC13Q8IUB5 93 aa13.93□□□□□ -0.18
HOXD1-201ENST00000331462 PRO0628Q9UI54 55 aa13.93□□□□□ -0.18
HOXD1-201ENST00000331462 DYNC2H1Q8NCM8 4307 aaKnown RBP13.93□□□□□ -0.18
HOXD1-201ENST00000331462 CYP4F30PQ9H0H9 118 aa13.92□□□□□ -0.18
HOXD1-201ENST00000331462 LINC00472Q9H8W2 130 aa13.92□□□□□ -0.18
HOXD1-201ENST00000331462 NDUFB1O75438 58 aa13.91□□□□□ -0.18
HOXD1-201ENST00000331462 PRR15Q8IV56 129 aa13.91□□□□□ -0.18
HOXD1-201ENST00000331462 B9D2Q9BPU9 175 aa13.91□□□□□ -0.18
HOXD1-201ENST00000331462 KRTAP13-1Q8IUC0 172 aa13.91□□□□□ -0.18
HOXD1-201ENST00000331462 A8MWP4 228 aa13.89□□□□□ -0.19
HOXD1-201ENST00000331462 RPL37AP61513 92 aaKnown RBP13.89□□□□□ -0.19
HOXD1-201ENST00000331462 MP68P56378 58 aa13.89□□□□□ -0.19
HOXD1-201ENST00000331462 C1orf64Q8NEQ6 169 aa13.87□□□□□ -0.19
HOXD1-201ENST00000331462 NBDYA0A0U1RRE5 68 aa13.87□□□□□ -0.19
HOXD1-201ENST00000331462 Q6ZRN7 208 aaPredicted RBP13.86□□□□□ -0.19
HOXD1-201ENST00000331462 CASC2Q6XLA1 102 aa13.85□□□□□ -0.19
HOXD1-201ENST00000331462 MPLKIPQ8TAP9 179 aa13.85□□□□□ -0.19
HOXD1-201ENST00000331462 H3BPC8 53 aa13.85□□□□□ -0.19
HOXD1-201ENST00000331462 LYSTQ99698 3801 aa13.85□□□□□ -0.19
HOXD1-201ENST00000331462 MGAM2Q2M2H8 2515 aa13.84□□□□□ -0.19
HOXD1-201ENST00000331462 TRAV22A0A0B4J277 110 aa13.84□□□□□ -0.19
HOXD1-201ENST00000331462 COL7A1Q02388 2944 aa13.83□□□□□ -0.2
HOXD1-201ENST00000331462 PANO1I0J062 215 aa13.81□□□□□ -0.2
HOXD1-201ENST00000331462 Q1T7F1 81 aa13.78□□□□□ -0.2
HOXD1-201ENST00000331462 LINC00208Q96KT6 92 aa13.78□□□□□ -0.2
HOXD1-201ENST00000331462 NUPR2A6NF83 97 aa13.77□□□□□ -0.21
HOXD1-201ENST00000331462 SPACA4Q8TDM5 124 aa13.77□□□□□ -0.21
HOXD1-201ENST00000331462 H0Y9P7 68 aa13.76□□□□□ -0.21
HOXD1-201ENST00000331462 SPANXA2-OT1Q8N9U9 137 aa13.76□□□□□ -0.21
HOXD1-201ENST00000331462 MMP24-AS1A0A0U1RRL7 71 aa13.74□□□□□ -0.21
HOXD1-201ENST00000331462 LINC00483Q53H64 154 aa13.73□□□□□ -0.21
HOXD1-201ENST00000331462 SRRM2Q9UQ35 2752 aaKnown RBP13.73□□□□□ -0.21
HOXD1-201ENST00000331462 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.71□□□□□ -0.21
HOXD1-201ENST00000331462 Q96NJ1 140 aa13.69□□□□□ -0.22
HOXD1-201ENST00000331462 PRR4Q16378 134 aa13.69□□□□□ -0.22
HOXD1-201ENST00000331462 BRK1Q8WUW1 75 aa13.69□□□□□ -0.22
HOXD1-201ENST00000331462 ASB16-AS1Q495Z4 193 aa13.68□□□□□ -0.22
HOXD1-201ENST00000331462 PLECQ15149 4684 aaKnown RBP13.66□□□□□ -0.22
HOXD1-201ENST00000331462 DNAH7Q8WXX0 4024 aa13.65□□□□□ -0.22
HOXD1-201ENST00000331462 CSMD3Q7Z407 3707 aa13.65□□□□□ -0.22
HOXD1-201ENST00000331462 ZNF706Q9Y5V0 76 aaPredicted RBP13.63□□□□□ -0.23
HOXD1-201ENST00000331462 MOBPQ13875 183 aa13.63□□□□□ -0.23
HOXD1-201ENST00000331462 A0A087WTM6 91 aa13.62□□□□□ -0.23
HOXD1-201ENST00000331462 IGLV9-49A0A0B4J1Y8 123 aa13.62□□□□□ -0.23
HOXD1-201ENST00000331462 TENM2Q9NT68 2774 aa13.61□□□□□ -0.23
HOXD1-201ENST00000331462 TP53AIP1Q9HCN2 124 aa13.59□□□□□ -0.23
HOXD1-201ENST00000331462 WWC2-AS2Q96NR7 200 aa13.58□□□□□ -0.24
HOXD1-201ENST00000331462 V9GYY9 64 aa13.58□□□□□ -0.24
HOXD1-201ENST00000331462 VPS13DQ5THJ4 4388 aa13.58□□□□□ -0.24
HOXD1-201ENST00000331462 IGLV5-52A0A0A0MRZ9 124 aa13.56□□□□□ -0.24
HOXD1-201ENST00000331462 C8orf17Q9NRJ1 99 aa13.55□□□□□ -0.24
HOXD1-201ENST00000331462 PLAC8Q9NZF1 115 aa13.54□□□□□ -0.24
HOXD1-201ENST00000331462 PSORS1C2Q9UIG4 136 aa13.54□□□□□ -0.24
HOXD1-201ENST00000331462 RTL8CO15255 209 aa13.53□□□□□ -0.24
HOXD1-201ENST00000331462 A0A1B0GVX0 72 aa13.51□□□□□ -0.25
HOXD1-201ENST00000331462 Q6ZR54 194 aa13.51□□□□□ -0.25
HOXD1-201ENST00000331462 IGLV7-46A0A075B6I9 117 aa13.5□□□□□ -0.25
HOXD1-201ENST00000331462 ZNF861PO60384 105 aa13.5□□□□□ -0.25
HOXD1-201ENST00000331462 PSPHP1O15172 72 aa13.47□□□□□ -0.25
HOXD1-201ENST00000331462 C1orf195Q5TG92 126 aa13.46□□□□□ -0.25
HOXD1-201ENST00000331462 STARD9Q9P2P6 4700 aa13.42□□□□□ -0.26
HOXD1-201ENST00000331462 IGHV6-1A0A0B4J1U7 121 aa13.42□□□□□ -0.26
HOXD1-201ENST00000331462 Q8N9P0 234 aaPredicted RBP13.42□□□□□ -0.26
HOXD1-201ENST00000331462 CDK2AP2O75956 126 aa13.41□□□□□ -0.26
HOXD1-201ENST00000331462 DNAH17Q9UFH2 4485 aa13.41□□□□□ -0.26
HOXD1-201ENST00000331462 A8MUN3 132 aa13.41□□□□□ -0.26
HOXD1-201ENST00000331462 MRPL34Q9BQ48 92 aaKnown RBP13.41□□□□□ -0.26
HOXD1-201ENST00000331462 LIMD2Q9BT23 127 aa13.41□□□□□ -0.26
HOXD1-201ENST00000331462 PRKDCP78527 4128 aaKnown RBP13.4□□□□□ -0.26
HOXD1-201ENST00000331462 CD164Q04900 197 aa13.4□□□□□ -0.27
HOXD1-201ENST00000331462 DNAH8Q96JB1 4490 aa13.39□□□□□ -0.27
HOXD1-201ENST00000331462 COA5Q86WW8 74 aa13.39□□□□□ -0.27
HOXD1-201ENST00000331462 HECTD4Q9Y4D8 3996 aa13.38□□□□□ -0.27
HOXD1-201ENST00000331462 Q5VV11 94 aa13.38□□□□□ -0.27
HOXD1-201ENST00000331462 ANAPC11Q9NYG5 84 aa13.38□□□□□ -0.27
HOXD1-201ENST00000331462 MEGF8Q7Z7M0 2845 aa13.35□□□□□ -0.27
HOXD1-201ENST00000331462 PCOTHQ58A44 107 aa13.34□□□□□ -0.27
HOXD1-201ENST00000331462 NDUFS5O43920 106 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms