RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TCL1BO95988 128 aa10.54□□□□□ -0.72
LIME1-201ENST00000309546 HIST1H4GQ99525 98 aa10.52□□□□□ -0.73
LIME1-201ENST00000309546 PYY3Q5JQD4 70 aa10.5□□□□□ -0.73
LIME1-201ENST00000309546 LCE2CQ5TA81 110 aa10.5□□□□□ -0.73
LIME1-201ENST00000309546 Q6JHZ5 121 aa10.48□□□□□ -0.73
LIME1-201ENST00000309546 CLEC2BQ92478 149 aa10.48□□□□□ -0.73
LIME1-201ENST00000309546 VAMP8Q9BV40 100 aa10.48□□□□□ -0.73
LIME1-201ENST00000309546 RPL37P61927 97 aaKnown RBP10.47□□□□□ -0.73
LIME1-201ENST00000309546 KRTAP19-2Q3LHN2 52 aa10.47□□□□□ -0.73
LIME1-201ENST00000309546 COX8AP10176 69 aa10.46□□□□□ -0.73
LIME1-201ENST00000309546 BVES-AS1Q5T3Y7 98 aa10.46□□□□□ -0.73
LIME1-201ENST00000309546 IGFL1Q6UW32 110 aa10.46□□□□□ -0.73
LIME1-201ENST00000309546 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.46□□□□□ -0.73
LIME1-201ENST00000309546 TRBV7-7A0A0K0K1E9 115 aa10.45□□□□□ -0.74
LIME1-201ENST00000309546 SPATA45Q537H7 98 aa10.45□□□□□ -0.74
LIME1-201ENST00000309546 OCIAD2Q56VL3 154 aa10.45□□□□□ -0.74
LIME1-201ENST00000309546 PAM16Q9Y3D7 125 aa10.45□□□□□ -0.74
LIME1-201ENST00000309546 MT1HP80294 61 aa10.42□□□□□ -0.74
LIME1-201ENST00000309546 SNHG12Q9BXW3 62 aa10.42□□□□□ -0.74
LIME1-201ENST00000309546 DLEU1O43261 78 aa10.41□□□□□ -0.74
LIME1-201ENST00000309546 PPDPFLQ8WWR9 84 aa10.4□□□□□ -0.74
LIME1-201ENST00000309546 RAB37Q96AX2 223 aa10.4□□□□□ -0.74
LIME1-201ENST00000309546 LOC105371267A0A1B0GV96 52 aa10.39□□□□□ -0.75
LIME1-201ENST00000309546 H3BUT2 72 aa10.39□□□□□ -0.75
LIME1-201ENST00000309546 C14orf144Q96I85 54 aa10.39□□□□□ -0.75
LIME1-201ENST00000309546 CFC1BP0CG36 223 aa10.37□□□□□ -0.75
LIME1-201ENST00000309546 CFC1P0CG37 223 aa10.37□□□□□ -0.75
LIME1-201ENST00000309546 LCE2DQ5TA82 110 aaPredicted RBP10.37□□□□□ -0.75
LIME1-201ENST00000309546 SMIM6P0DI80 62 aa10.35□□□□□ -0.75
LIME1-201ENST00000309546 SNCGO76070 127 aa10.33□□□□□ -0.76
LIME1-201ENST00000309546 COX6B2Q6YFQ2 88 aa10.33□□□□□ -0.76
LIME1-201ENST00000309546 OBSCN-AS1Q96MR7 158 aa10.33□□□□□ -0.76
LIME1-201ENST00000309546 HIGD1BQ9P298 99 aa10.33□□□□□ -0.76
LIME1-201ENST00000309546 A0A0B4J2C4 111 aa10.32□□□□□ -0.76
LIME1-201ENST00000309546 LST1O00453 97 aa10.32□□□□□ -0.76
LIME1-201ENST00000309546 FAM218AQ96MZ4 157 aa10.31□□□□□ -0.76
LIME1-201ENST00000309546 H0YGX0 51 aa10.3□□□□□ -0.76
LIME1-201ENST00000309546 C2orf91Q6ZV80 131 aa10.3□□□□□ -0.76
LIME1-201ENST00000309546 M0R2T5 61 aa10.28□□□□□ -0.76
LIME1-201ENST00000309546 NDUFV3P56181 108 aaKnown RBP10.28□□□□□ -0.76
LIME1-201ENST00000309546 UQCR10Q9UDW1 63 aa10.28□□□□□ -0.76
LIME1-201ENST00000309546 FSIP2Q5CZC0 6907 aa10.28□□□□□ -0.76
LIME1-201ENST00000309546 SS18L2Q9UHA2 77 aa10.27□□□□□ -0.77
LIME1-201ENST00000309546 ATP11AUNQ6ZP68 121 aa10.26□□□□□ -0.77
LIME1-201ENST00000309546 CEND1Q8N111 149 aa10.26□□□□□ -0.77
LIME1-201ENST00000309546 Q6Q795 121 aa10.25□□□□□ -0.77
LIME1-201ENST00000309546 Q75L30 129 aa10.25□□□□□ -0.77
LIME1-201ENST00000309546 TMEM238LA0A1B0GVL6 79 aa10.24□□□□□ -0.77
LIME1-201ENST00000309546 A6NJY4 79 aa10.24□□□□□ -0.77
LIME1-201ENST00000309546 PRO1854Q9UHT4 67 aa10.24□□□□□ -0.77
LIME1-201ENST00000309546 FABP2P12104 132 aa10.23□□□□□ -0.77
LIME1-201ENST00000309546 KRTAP10-6P60371 365 aaPredicted RBP10.23□□□□□ -0.77
LIME1-201ENST00000309546 TEN1Q86WV5 123 aa10.23□□□□□ -0.77
LIME1-201ENST00000309546 Q96NJ1 140 aa10.23□□□□□ -0.77
LIME1-201ENST00000309546 A0A087WSZ3 146 aa10.22□□□□□ -0.77
LIME1-201ENST00000309546 FLGP20930 4061 aaPredicted RBP10.21□□□□□ -0.77
LIME1-201ENST00000309546 H3BMG7 143 aa10.21□□□□□ -0.77
LIME1-201ENST00000309546 LORP23490 312 aaPredicted RBP10.21□□□□□ -0.77
LIME1-201ENST00000309546 FXYD2P54710 66 aa10.21□□□□□ -0.77
LIME1-201ENST00000309546 A0A1B0GX51 115 aa10.2□□□□□ -0.78
LIME1-201ENST00000309546 GHRHP01286 108 aa10.19□□□□□ -0.78
LIME1-201ENST00000309546 TRIAP1O43715 76 aa10.18□□□□□ -0.78
LIME1-201ENST00000309546 HSD52Q0P140 79 aa10.17□□□□□ -0.78
LIME1-201ENST00000309546 CRCT1Q9UGL9 99 aa10.17□□□□□ -0.78
LIME1-201ENST00000309546 A0A1B0GV72 72 aa10.14□□□□□ -0.79
LIME1-201ENST00000309546 TSTD3H0UI37 97 aa10.14□□□□□ -0.79
LIME1-201ENST00000309546 DNAL4O96015 105 aa10.13□□□□□ -0.79
LIME1-201ENST00000309546 SIGMAR1Q99720 223 aa10.13□□□□□ -0.79
LIME1-201ENST00000309546 A0A1W2PNM2 257 aa10.12□□□□□ -0.79
LIME1-201ENST00000309546 PSMB2P49721 201 aa10.12□□□□□ -0.79
LIME1-201ENST00000309546 C20orf166-AS1Q96NR2 134 aa10.12□□□□□ -0.79
LIME1-201ENST00000309546 K7ERJ3 54 aa10.11□□□□□ -0.79
LIME1-201ENST00000309546 DSCR10P59022 87 aa10.11□□□□□ -0.79
LIME1-201ENST00000309546 A8MUU9 505 aa10.1□□□□□ -0.79
LIME1-201ENST00000309546 ORMDL1Q9P0S3 153 aa10.1□□□□□ -0.79
LIME1-201ENST00000309546 ANKRD29Q8N6D5 301 aa10.08□□□□□ -0.8
LIME1-201ENST00000309546 IGKV4-1P06312 121 aa10.04□□□□□ -0.8
LIME1-201ENST00000309546 COX6CP09669 75 aa10.04□□□□□ -0.8
LIME1-201ENST00000309546 TRBV7-4A0A0J9YYF1 115 aa10.03□□□□□ -0.8
LIME1-201ENST00000309546 H3BQ85 93 aa10.03□□□□□ -0.8
LIME1-201ENST00000309546 M0R143 59 aa10.03□□□□□ -0.8
LIME1-201ENST00000309546 TMEM256-PLSCR3K7ERE1 68 aa10.02□□□□□ -0.81
LIME1-201ENST00000309546 TRBV20-1A0A075B6N2 111 aa10.01□□□□□ -0.81
LIME1-201ENST00000309546 LINC00313P59037 77 aa10.01□□□□□ -0.81
LIME1-201ENST00000309546 CCKP06307 115 aa10□□□□□ -0.81
LIME1-201ENST00000309546 TRACP01848 142 aa9.99□□□□□ -0.81
LIME1-201ENST00000309546 DEFB116Q30KQ4 102 aa9.99□□□□□ -0.81
LIME1-201ENST00000309546 KRTAP16-1A8MUX0 517 aa9.95□□□□□ -0.82
LIME1-201ENST00000309546 VPS25Q9BRG1 176 aa9.95□□□□□ -0.82
LIME1-201ENST00000309546 UBE2V1Q13404 147 aa9.94□□□□□ -0.82
LIME1-201ENST00000309546 NOTCH2NLQ7Z3S9 236 aa9.94□□□□□ -0.82
LIME1-201ENST00000309546 IGHV6-1A0A0B4J1U7 121 aa9.93□□□□□ -0.82
LIME1-201ENST00000309546 SCGB1C2P0DMR2 95 aa9.93□□□□□ -0.82
LIME1-201ENST00000309546 LINC00472Q9H8W2 130 aa9.93□□□□□ -0.82
LIME1-201ENST00000309546 BATFQ16520 125 aa9.9□□□□□ -0.82
LIME1-201ENST00000309546 FAM236DA0A1B0GTK5 79 aa9.89□□□□□ -0.83
LIME1-201ENST00000309546 FAM236CP0DP71 79 aa9.89□□□□□ -0.83
LIME1-201ENST00000309546 RBM3P98179 157 aaKnown RBP9.88□□□□□ -0.83
LIME1-201ENST00000309546 DSCR8Q96T75 97 aa9.88□□□□□ -0.83
LIME1-201ENST00000309546 A0A1B0GVX0 72 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms