RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 SCXQ7RTU7 201 aa13.91□□□□□ -0.18
PDLIM2-202ENST00000308354 SMIM29Q86T20 159 aa13.9□□□□□ -0.18
PDLIM2-202ENST00000308354 UBE2AP49459 152 aa13.89□□□□□ -0.19
PDLIM2-202ENST00000308354 A0A1W2PNM2 257 aa13.88□□□□□ -0.19
PDLIM2-202ENST00000308354 DNAH11Q96DT5 4516 aa13.86□□□□□ -0.19
PDLIM2-202ENST00000308354 BCE1O60756 84 aa13.86□□□□□ -0.19
PDLIM2-202ENST00000308354 PLAC8Q9NZF1 115 aa13.86□□□□□ -0.19
PDLIM2-202ENST00000308354 UQCRQO14949 82 aa13.86□□□□□ -0.19
PDLIM2-202ENST00000308354 COX7CP15954 63 aa13.85□□□□□ -0.19
PDLIM2-202ENST00000308354 NREPQ16612 68 aa13.84□□□□□ -0.19
PDLIM2-202ENST00000308354 H0Y9J4 135 aa13.84□□□□□ -0.19
PDLIM2-202ENST00000308354 DNAH8Q96JB1 4490 aa13.83□□□□□ -0.2
PDLIM2-202ENST00000308354 DNAH5Q8TE73 4624 aa13.83□□□□□ -0.2
PDLIM2-202ENST00000308354 FAT2Q9NYQ8 4349 aa13.83□□□□□ -0.2
PDLIM2-202ENST00000308354 Q8NBF4 154 aa13.83□□□□□ -0.2
PDLIM2-202ENST00000308354 FAM30AQ9NZY2 134 aa13.82□□□□□ -0.2
PDLIM2-202ENST00000308354 F8WEM9 126 aa13.81□□□□□ -0.2
PDLIM2-202ENST00000308354 C9orf153Q5TBE3 101 aa13.8□□□□□ -0.2
PDLIM2-202ENST00000308354 KRTAP13-1Q8IUC0 172 aa13.8□□□□□ -0.2
PDLIM2-202ENST00000308354 PSORS1C2Q9UIG4 136 aa13.8□□□□□ -0.2
PDLIM2-202ENST00000308354 SMIM20Q8N5G0 67 aa13.8□□□□□ -0.2
PDLIM2-202ENST00000308354 SERP2Q8N6R1 65 aa13.8□□□□□ -0.2
PDLIM2-202ENST00000308354 A0A0G2JQZ4 141 aa13.79□□□□□ -0.2
PDLIM2-202ENST00000308354 PKD1P98161 4303 aa13.79□□□□□ -0.2
PDLIM2-202ENST00000308354 SACSQ9NZJ4 4579 aa13.78□□□□□ -0.2
PDLIM2-202ENST00000308354 SPRR4Q96PI1 79 aa13.78□□□□□ -0.2
PDLIM2-202ENST00000308354 Q8N9L7 120 aa13.77□□□□□ -0.21
PDLIM2-202ENST00000308354 A0A1B0GW54 56 aa13.76□□□□□ -0.21
PDLIM2-202ENST00000308354 IGFL1Q6UW32 110 aa13.75□□□□□ -0.21
PDLIM2-202ENST00000308354 BPY2O14599 106 aa13.74□□□□□ -0.21
PDLIM2-202ENST00000308354 KRTAP10-1P60331 282 aa13.74□□□□□ -0.21
PDLIM2-202ENST00000308354 CIRBP-AS1Q8TBR5 109 aa13.74□□□□□ -0.21
PDLIM2-202ENST00000308354 CRYGAP11844 174 aa13.71□□□□□ -0.21
PDLIM2-202ENST00000308354 IGLV8-61A0A075B6I0 122 aa13.71□□□□□ -0.22
PDLIM2-202ENST00000308354 IGKV4-1P06312 121 aa13.7□□□□□ -0.22
PDLIM2-202ENST00000308354 LCE6AA0A183 80 aa13.69□□□□□ -0.22
PDLIM2-202ENST00000308354 SPRR1BP22528 89 aa13.69□□□□□ -0.22
PDLIM2-202ENST00000308354 CYSTM1Q9H1C7 97 aa13.67□□□□□ -0.22
PDLIM2-202ENST00000308354 Q6ZSA8 131 aa13.63□□□□□ -0.23
PDLIM2-202ENST00000308354 ZNF861PO60384 105 aa13.63□□□□□ -0.23
PDLIM2-202ENST00000308354 TRAV7A0A075B6U4 112 aa13.6□□□□□ -0.23
PDLIM2-202ENST00000308354 A0A087WSZ3 146 aa13.6□□□□□ -0.23
PDLIM2-202ENST00000308354 C5orf47Q569G3 176 aa13.59□□□□□ -0.23
PDLIM2-202ENST00000308354 ANAPC11Q9NYG5 84 aa13.59□□□□□ -0.23
PDLIM2-202ENST00000308354 IGLV7-43P04211 117 aa13.58□□□□□ -0.24
PDLIM2-202ENST00000308354 IGLV9-49A0A0B4J1Y8 123 aa13.57□□□□□ -0.24
PDLIM2-202ENST00000308354 DSCR10P59022 87 aa13.57□□□□□ -0.24
PDLIM2-202ENST00000308354 PKHD1P08F94 4074 aa13.57□□□□□ -0.24
PDLIM2-202ENST00000308354 LRP1BQ9NZR2 4599 aa13.56□□□□□ -0.24
PDLIM2-202ENST00000308354 C20orf197Q8N268 126 aa13.55□□□□□ -0.24
PDLIM2-202ENST00000308354 KMT2CQ8NEZ4 4911 aaKnown RBP13.53□□□□□ -0.24
PDLIM2-202ENST00000308354 DEFB116Q30KQ4 102 aa13.53□□□□□ -0.24
PDLIM2-202ENST00000308354 K7EQZ3 153 aa13.52□□□□□ -0.24
PDLIM2-202ENST00000308354 LINC00483Q53H64 154 aa13.52□□□□□ -0.24
PDLIM2-202ENST00000308354 ZNF706Q9Y5V0 76 aaPredicted RBP13.51□□□□□ -0.25
PDLIM2-202ENST00000308354 LINC00336Q6ZUF6 198 aa13.49□□□□□ -0.25
PDLIM2-202ENST00000308354 RYR2Q92736 4967 aa13.48□□□□□ -0.25
PDLIM2-202ENST00000308354 TMEM258P61165 79 aa13.47□□□□□ -0.25
PDLIM2-202ENST00000308354 RPS28P62857 69 aaKnown RBP13.46□□□□□ -0.25
PDLIM2-202ENST00000308354 J3KT08 172 aa13.45□□□□□ -0.26
PDLIM2-202ENST00000308354 OCR1Q9BZK8 76 aa13.44□□□□□ -0.26
PDLIM2-202ENST00000308354 MOBPQ13875 183 aa13.43□□□□□ -0.26
PDLIM2-202ENST00000308354 A0A1B0GVY2 172 aa13.42□□□□□ -0.26
PDLIM2-202ENST00000308354 SNURFQ9Y675 71 aa13.42□□□□□ -0.26
PDLIM2-202ENST00000308354 HRCT1Q6UXD1 115 aa13.41□□□□□ -0.26
PDLIM2-202ENST00000308354 RPL37AP61513 92 aaKnown RBP13.4□□□□□ -0.26
PDLIM2-202ENST00000308354 KLKP1Q107X0 134 aa13.39□□□□□ -0.27
PDLIM2-202ENST00000308354 LINC00472Q9H8W2 130 aa13.37□□□□□ -0.27
PDLIM2-202ENST00000308354 VPS13BQ7Z7G8 4022 aa13.37□□□□□ -0.27
PDLIM2-202ENST00000308354 DYNC1H1Q14204 4646 aaKnown RBP13.36□□□□□ -0.27
PDLIM2-202ENST00000308354 HCG22E2RYF7 251 aa13.36□□□□□ -0.27
PDLIM2-202ENST00000308354 H7BZZ5 65 aa13.33□□□□□ -0.27
PDLIM2-202ENST00000308354 TMEM254Q8TBM7 123 aa13.33□□□□□ -0.27
PDLIM2-202ENST00000308354 SMR3BP02814 79 aaPredicted RBP13.31□□□□□ -0.28
PDLIM2-202ENST00000308354 WFDC13Q8IUB5 93 aa13.3□□□□□ -0.28
PDLIM2-202ENST00000308354 A8MWP4 228 aa13.28□□□□□ -0.28
PDLIM2-202ENST00000308354 PRR15Q8IV56 129 aa13.28□□□□□ -0.28
PDLIM2-202ENST00000308354 A0A087X002 238 aa13.27□□□□□ -0.28
PDLIM2-202ENST00000308354 Q96NJ1 140 aa13.25□□□□□ -0.29
PDLIM2-202ENST00000308354 A0A0U1RQV1 116 aa13.24□□□□□ -0.29
PDLIM2-202ENST00000308354 KRTAP29-1A8MX34 341 aaPredicted RBP13.21□□□□□ -0.29
PDLIM2-202ENST00000308354 FAM236DA0A1B0GTK5 79 aa13.21□□□□□ -0.29
PDLIM2-202ENST00000308354 FAM236CP0DP71 79 aa13.21□□□□□ -0.29
PDLIM2-202ENST00000308354 KRTAP13-2Q52LG2 175 aa13.2□□□□□ -0.3
PDLIM2-202ENST00000308354 NDUFC1O43677 76 aa13.2□□□□□ -0.3
PDLIM2-202ENST00000308354 OXTP01178 125 aa13.2□□□□□ -0.3
PDLIM2-202ENST00000308354 KRTAP1-4P0C5Y4 121 aa13.2□□□□□ -0.3
PDLIM2-202ENST00000308354 APOBP04114 4563 aaKnown RBP13.19□□□□□ -0.3
PDLIM2-202ENST00000308354 RYR3Q15413 4870 aa13.19□□□□□ -0.3
PDLIM2-202ENST00000308354 CASC2Q6XLA1 102 aa13.19□□□□□ -0.3
PDLIM2-202ENST00000308354 SSBP3-AS1Q7Z2R9 100 aa13.15□□□□□ -0.3
PDLIM2-202ENST00000308354 FAT1Q14517 4588 aa13.15□□□□□ -0.3
PDLIM2-202ENST00000308354 NDUFB1O75438 58 aa13.14□□□□□ -0.31
PDLIM2-202ENST00000308354 MMP24-AS1A0A0U1RRL7 71 aa13.13□□□□□ -0.31
PDLIM2-202ENST00000308354 PLA2G1BP04054 148 aaKnown RBP13.12□□□□□ -0.31
PDLIM2-202ENST00000308354 FAM229BQ4G0N7 80 aa13.12□□□□□ -0.31
PDLIM2-202ENST00000308354 SPINK6Q6UWN8 80 aa13.08□□□□□ -0.32
PDLIM2-202ENST00000308354 ZCCHC13Q8WW36 166 aaKnown RBP13.06□□□□□ -0.32
PDLIM2-202ENST00000308354 SERP1Q9Y6X1 66 aa13.06□□□□□ -0.32
PDLIM2-202ENST00000308354 hDV103S1A0JD37 113 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms