RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 UBL5Q9BZL1 73 aa10.38□□□□□ -0.75
SDCBP-201ENST00000260130 FLG2Q5D862 2391 aaPredicted RBP10.38□□□□□ -0.75
SDCBP-201ENST00000260130 PKHD1L1Q86WI1 4243 aa10.37□□□□□ -0.75
SDCBP-201ENST00000260130 RBM3P98179 157 aaKnown RBP10.36□□□□□ -0.75
SDCBP-201ENST00000260130 PSORS1C2Q9UIG4 136 aa10.36□□□□□ -0.75
SDCBP-201ENST00000260130 PLA2G2DQ9UNK4 145 aa10.36□□□□□ -0.75
SDCBP-201ENST00000260130 LOC110117498A0A087WWA1 95 aa10.35□□□□□ -0.75
SDCBP-201ENST00000260130 TRBV10-3A0A0K0K1G6 114 aa10.35□□□□□ -0.75
SDCBP-201ENST00000260130 UBE2BP63146 152 aa10.34□□□□□ -0.75
SDCBP-201ENST00000260130 KRTAP11-1Q8IUC1 163 aa10.34□□□□□ -0.75
SDCBP-201ENST00000260130 LAMTOR3Q9UHA4 124 aa10.34□□□□□ -0.75
SDCBP-201ENST00000260130 Q6ZQT0 140 aa10.33□□□□□ -0.76
SDCBP-201ENST00000260130 TRAV23DV6A0A075B6W5 121 aa10.32□□□□□ -0.76
SDCBP-201ENST00000260130 PDE6GP18545 87 aa10.32□□□□□ -0.76
SDCBP-201ENST00000260130 C1orf137Q5JT78 98 aa10.32□□□□□ -0.76
SDCBP-201ENST00000260130 MRPL55Q7Z7F7 128 aaKnown RBP10.32□□□□□ -0.76
SDCBP-201ENST00000260130 DIRC1Q969H9 104 aa10.32□□□□□ -0.76
SDCBP-201ENST00000260130 IGLV5-37A0A075B6J1 123 aa10.31□□□□□ -0.76
SDCBP-201ENST00000260130 GHRHP01286 108 aa10.31□□□□□ -0.76
SDCBP-201ENST00000260130 DSCR8Q96T75 97 aa10.31□□□□□ -0.76
SDCBP-201ENST00000260130 LRP1Q07954 4544 aaKnown RBP10.3□□□□□ -0.76
SDCBP-201ENST00000260130 Q6ZQY7 126 aa10.3□□□□□ -0.76
SDCBP-201ENST00000260130 NKAPP1Q8N9T2 125 aa10.29□□□□□ -0.76
SDCBP-201ENST00000260130 FAT3Q8TDW7 4589 aa10.28□□□□□ -0.76
SDCBP-201ENST00000260130 KRTAP29-1A8MX34 341 aaPredicted RBP10.28□□□□□ -0.76
SDCBP-201ENST00000260130 SPINK6Q6UWN8 80 aa10.28□□□□□ -0.76
SDCBP-201ENST00000260130 VPREB1P12018 145 aa10.28□□□□□ -0.76
SDCBP-201ENST00000260130 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.28□□□□□ -0.76
SDCBP-201ENST00000260130 TRBV7-6A0A0J9YX20 115 aa10.27□□□□□ -0.77
SDCBP-201ENST00000260130 TMEM258P61165 79 aa10.27□□□□□ -0.77
SDCBP-201ENST00000260130 FAM19A1Q7Z5A9 133 aa10.27□□□□□ -0.77
SDCBP-201ENST00000260130 J3KT08 172 aa10.26□□□□□ -0.77
SDCBP-201ENST00000260130 ZNF73O43830 326 aaPredicted RBP10.26□□□□□ -0.77
SDCBP-201ENST00000260130 OXTP01178 125 aa10.26□□□□□ -0.77
SDCBP-201ENST00000260130 COX7BP24311 80 aa10.26□□□□□ -0.77
SDCBP-201ENST00000260130 IGLV7-43P04211 117 aa10.26□□□□□ -0.77
SDCBP-201ENST00000260130 RPL37AP8A6NKH3 93 aa10.25□□□□□ -0.77
SDCBP-201ENST00000260130 ELOF1P60002 83 aaKnown RBP10.25□□□□□ -0.77
SDCBP-201ENST00000260130 J3QL48 77 aa10.24□□□□□ -0.77
SDCBP-201ENST00000260130 RPS28P62857 69 aaKnown RBP10.24□□□□□ -0.77
SDCBP-201ENST00000260130 M0R378 163 aa10.23□□□□□ -0.77
SDCBP-201ENST00000260130 BCE1O60756 84 aa10.23□□□□□ -0.77
SDCBP-201ENST00000260130 CYSTM1Q9H1C7 97 aa10.23□□□□□ -0.77
SDCBP-201ENST00000260130 Q6ZVQ6 151 aa10.22□□□□□ -0.77
SDCBP-201ENST00000260130 DMBT1Q9UGM3 2413 aaPredicted RBP10.22□□□□□ -0.77
SDCBP-201ENST00000260130 LINC01547P58512 204 aaPredicted RBP10.22□□□□□ -0.77
SDCBP-201ENST00000260130 IGLV1-50A0A075B6I6 118 aa10.2□□□□□ -0.78
SDCBP-201ENST00000260130 TRBV7-4A0A0J9YYF1 115 aa10.2□□□□□ -0.78
SDCBP-201ENST00000260130 CXCL6P80162 114 aa10.2□□□□□ -0.78
SDCBP-201ENST00000260130 HERC1Q15751 4861 aa10.2□□□□□ -0.78
SDCBP-201ENST00000260130 REG3GQ6UW15 175 aa10.19□□□□□ -0.78
SDCBP-201ENST00000260130 ZNF861PO60384 105 aa10.17□□□□□ -0.78
SDCBP-201ENST00000260130 TRAV7A0A075B6U4 112 aa10.15□□□□□ -0.78
SDCBP-201ENST00000260130 H0Y9J4 135 aa10.15□□□□□ -0.78
SDCBP-201ENST00000260130 MT1HL1P0DM35 61 aa10.12□□□□□ -0.79
SDCBP-201ENST00000260130 C20orf197Q8N268 126 aa10.12□□□□□ -0.79
SDCBP-201ENST00000260130 UBE2AP49459 152 aa10.11□□□□□ -0.79
SDCBP-201ENST00000260130 TNXBP22105 4242 aa10.1□□□□□ -0.79
SDCBP-201ENST00000260130 KRTAP13-1Q8IUC0 172 aa10.1□□□□□ -0.79
SDCBP-201ENST00000260130 KCNQ1DNQ9H478 68 aa10.09□□□□□ -0.79
SDCBP-201ENST00000260130 PRYO14603 147 aa10.08□□□□□ -0.8
SDCBP-201ENST00000260130 KRTAP10-8P60410 259 aa10.07□□□□□ -0.8
SDCBP-201ENST00000260130 PRLHP81277 87 aa10.07□□□□□ -0.8
SDCBP-201ENST00000260130 KRTAP1-4P0C5Y4 121 aa10.06□□□□□ -0.8
SDCBP-201ENST00000260130 SPRR1AP35321 89 aa10.05□□□□□ -0.8
SDCBP-201ENST00000260130 KLKP1Q107X0 134 aa10.05□□□□□ -0.8
SDCBP-201ENST00000260130 FAM236DA0A1B0GTK5 79 aa10.03□□□□□ -0.8
SDCBP-201ENST00000260130 FAM236CP0DP71 79 aa10.03□□□□□ -0.8
SDCBP-201ENST00000260130 KRTAP4-16G5E9R7 235 aaPredicted RBP10.02□□□□□ -0.81
SDCBP-201ENST00000260130 PRR26Q8N8Z3 221 aa10.02□□□□□ -0.81
SDCBP-201ENST00000260130 ETDCA0A1B0GVM5 59 aa10.01□□□□□ -0.81
SDCBP-201ENST00000260130 H7BZZ5 65 aa10.01□□□□□ -0.81
SDCBP-201ENST00000260130 NREPQ16612 68 aa10.01□□□□□ -0.81
SDCBP-201ENST00000260130 DHRS4-AS1Q9P1J3 65 aa10.01□□□□□ -0.81
SDCBP-201ENST00000260130 HIGD2AQ9BW72 106 aa9.99□□□□□ -0.81
SDCBP-201ENST00000260130 Q8N377 158 aa9.99□□□□□ -0.81
SDCBP-201ENST00000260130 IGLV5-48A0A075B6I7 105 aa9.98□□□□□ -0.81
SDCBP-201ENST00000260130 DEFB105AQ8NG35 78 aa9.98□□□□□ -0.81
SDCBP-201ENST00000260130 A0A1B0GW54 56 aa9.98□□□□□ -0.81
SDCBP-201ENST00000260130 NDUFC1O43677 76 aa9.98□□□□□ -0.81
SDCBP-201ENST00000260130 BPY2O14599 106 aa9.97□□□□□ -0.81
SDCBP-201ENST00000260130 Q6ZRX8 168 aa9.97□□□□□ -0.81
SDCBP-201ENST00000260130 IGKV4-1P06312 121 aa9.96□□□□□ -0.82
SDCBP-201ENST00000260130 SNURFQ9Y675 71 aa9.96□□□□□ -0.82
SDCBP-201ENST00000260130 SERP1Q9Y6X1 66 aa9.96□□□□□ -0.82
SDCBP-201ENST00000260130 ERC2-IT1O76042 136 aa9.95□□□□□ -0.82
SDCBP-201ENST00000260130 C5orf47Q569G3 176 aa9.95□□□□□ -0.82
SDCBP-201ENST00000260130 ANAPC11Q9NYG5 84 aa9.95□□□□□ -0.82
SDCBP-201ENST00000260130 A0A087X002 238 aa9.93□□□□□ -0.82
SDCBP-201ENST00000260130 F8WEM9 126 aa9.93□□□□□ -0.82
SDCBP-201ENST00000260130 FAM229BQ4G0N7 80 aa9.92□□□□□ -0.82
SDCBP-201ENST00000260130 Q8N9L7 120 aa9.92□□□□□ -0.82
SDCBP-201ENST00000260130 Q9BRP9 147 aa9.92□□□□□ -0.82
SDCBP-201ENST00000260130 ZNF706Q9Y5V0 76 aaPredicted RBP9.91□□□□□ -0.82
SDCBP-201ENST00000260130 ATP5EP56381 51 aaPredicted RBP9.9□□□□□ -0.82
SDCBP-201ENST00000260130 SPRR4Q96PI1 79 aa9.9□□□□□ -0.82
SDCBP-201ENST00000260130 TMEM254Q8TBM7 123 aa9.9□□□□□ -0.83
SDCBP-201ENST00000260130 HMCN2Q8NDA2 5059 aa9.89□□□□□ -0.83
SDCBP-201ENST00000260130 Q5XG85 94 aa9.89□□□□□ -0.83
SDCBP-201ENST00000260130 TYMSOSQ8TAI1 123 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms