RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 B9D2Q9BPU9 175 aa9.17□□□□□ -0.94
SDC1-201ENST00000254351 KRTAP7-1Q8IUC3 87 aa9.16□□□□□ -0.94
SDC1-201ENST00000254351 TNP2Q05952 138 aa9.16□□□□□ -0.94
SDC1-201ENST00000254351 IGFL1Q6UW32 110 aa9.15□□□□□ -0.95
SDC1-201ENST00000254351 LCE6AA0A183 80 aa9.14□□□□□ -0.95
SDC1-201ENST00000254351 Q5VV11 94 aa9.14□□□□□ -0.95
SDC1-201ENST00000254351 MRPL55Q7Z7F7 128 aaKnown RBP9.14□□□□□ -0.95
SDC1-201ENST00000254351 H0Y9P7 68 aa9.13□□□□□ -0.95
SDC1-201ENST00000254351 SPRR4Q96PI1 79 aa9.13□□□□□ -0.95
SDC1-201ENST00000254351 ANK2Q01484 3957 aa9.13□□□□□ -0.95
SDC1-201ENST00000254351 KRTAP4-16G5E9R7 235 aaPredicted RBP9.12□□□□□ -0.95
SDC1-201ENST00000254351 PCOTHQ58A44 107 aa9.12□□□□□ -0.95
SDC1-201ENST00000254351 DEFB131BA0A096LNP1 70 aa9.11□□□□□ -0.95
SDC1-201ENST00000254351 A6NED7 52 aa9.09□□□□□ -0.95
SDC1-201ENST00000254351 H0Y9J4 135 aa9.09□□□□□ -0.95
SDC1-201ENST00000254351 CASC2Q6XLA1 102 aa9.09□□□□□ -0.95
SDC1-201ENST00000254351 TENM2Q9NT68 2774 aa9.09□□□□□ -0.95
SDC1-201ENST00000254351 REG3GQ6UW15 175 aa9.09□□□□□ -0.95
SDC1-201ENST00000254351 C16orf90A8MZG2 172 aa9.08□□□□□ -0.96
SDC1-201ENST00000254351 NDUFB1O75438 58 aa9.07□□□□□ -0.96
SDC1-201ENST00000254351 CYP4F30PQ9H0H9 118 aa9.07□□□□□ -0.96
SDC1-201ENST00000254351 Q8N9P0 234 aaPredicted RBP9.07□□□□□ -0.96
SDC1-201ENST00000254351 UBE2AP49459 152 aa9.05□□□□□ -0.96
SDC1-201ENST00000254351 LINC01556Q5JQF7 62 aa9.05□□□□□ -0.96
SDC1-201ENST00000254351 SPAG11AQ6PDA7 123 aa9.04□□□□□ -0.96
SDC1-201ENST00000254351 SPRR1AP35321 89 aa9.03□□□□□ -0.96
SDC1-201ENST00000254351 C11orf45Q8TAV5 145 aa9.03□□□□□ -0.96
SDC1-201ENST00000254351 LCA10Q71F78 164 aa9.02□□□□□ -0.97
SDC1-201ENST00000254351 CNBPP62633 177 aaKnown RBP9□□□□□ -0.97
SDC1-201ENST00000254351 CHTF8P0CG12 524 aa9□□□□□ -0.97
SDC1-201ENST00000254351 COA5Q86WW8 74 aa9□□□□□ -0.97
SDC1-201ENST00000254351 A0A1B0GW54 56 aa8.99□□□□□ -0.97
SDC1-201ENST00000254351 KRTAP10-11P60412 298 aa8.99□□□□□ -0.97
SDC1-201ENST00000254351 LYSTQ99698 3801 aa8.99□□□□□ -0.97
SDC1-201ENST00000254351 NDUFS5O43920 106 aa8.98□□□□□ -0.97
SDC1-201ENST00000254351 LINC00588Q9Y4M8 146 aa8.98□□□□□ -0.97
SDC1-201ENST00000254351 DNAH10Q8IVF4 4471 aa8.97□□□□□ -0.97
SDC1-201ENST00000254351 KRTAP29-1A8MX34 341 aaPredicted RBP8.96□□□□□ -0.98
SDC1-201ENST00000254351 PHF5AQ7RTV0 110 aaKnown RBP8.96□□□□□ -0.98
SDC1-201ENST00000254351 KRTAP11-1Q8IUC1 163 aa8.96□□□□□ -0.98
SDC1-201ENST00000254351 LIMD2Q9BT23 127 aa8.96□□□□□ -0.98
SDC1-201ENST00000254351 RBM12B-AS1Q9P1G2 102 aa8.95□□□□□ -0.98
SDC1-201ENST00000254351 TLX1NBP0CAT3 122 aa8.94□□□□□ -0.98
SDC1-201ENST00000254351 STAB2Q8WWQ8 2551 aa8.94□□□□□ -0.98
SDC1-201ENST00000254351 CD164Q04900 197 aa8.94□□□□□ -0.98
SDC1-201ENST00000254351 MDFIQ99750 246 aa8.94□□□□□ -0.98
SDC1-201ENST00000254351 DNAH10OSP0CZ25 163 aa8.93□□□□□ -0.98
SDC1-201ENST00000254351 H3BNG1 76 aa8.92□□□□□ -0.98
SDC1-201ENST00000254351 PLA2G2DQ9UNK4 145 aa8.92□□□□□ -0.98
SDC1-201ENST00000254351 MGAM2Q2M2H8 2515 aa8.92□□□□□ -0.98
SDC1-201ENST00000254351 IGLV9-49A0A0B4J1Y8 123 aa8.92□□□□□ -0.98
SDC1-201ENST00000254351 KTN1-AS1Q86SY8 53 aa8.91□□□□□ -0.98
SDC1-201ENST00000254351 A8MWP4 228 aa8.9□□□□□ -0.98
SDC1-201ENST00000254351 IGLV5-37A0A075B6J1 123 aa8.9□□□□□ -0.98
SDC1-201ENST00000254351 C9orf163Q8N9P6 203 aa8.88□□□□□ -0.99
SDC1-201ENST00000254351 CMYA5Q8N3K9 4069 aa8.88□□□□□ -0.99
SDC1-201ENST00000254351 SPINK7P58062 85 aa8.87□□□□□ -0.99
SDC1-201ENST00000254351 SPANXA2-OT1Q8N9U9 137 aa8.87□□□□□ -0.99
SDC1-201ENST00000254351 IGHV6-1A0A0B4J1U7 121 aa8.87□□□□□ -0.99
SDC1-201ENST00000254351 LINC00472Q9H8W2 130 aa8.86□□□□□ -0.99
SDC1-201ENST00000254351 MMP24-AS1A0A0U1RRL7 71 aa8.84□□□□□ -0.99
SDC1-201ENST00000254351 LOC101927531A0A1B0GV80 90 aa8.84□□□□□ -0.99
SDC1-201ENST00000254351 ATP11AUNQ6ZP68 121 aa8.84□□□□□ -0.99
SDC1-201ENST00000254351 Q75L30 129 aa8.83□□□□□ -1
SDC1-201ENST00000254351 K7EIL1 84 aa8.82□□□□□ -1
SDC1-201ENST00000254351 MOBPQ13875 183 aa8.82□□□□□ -1
SDC1-201ENST00000254351 KRTAP1-5Q9BYS1 174 aa8.82□□□□□ -1
SDC1-201ENST00000254351 PRR26Q8N8Z3 221 aa8.81□□□□□ -1
SDC1-201ENST00000254351 ANAPC11Q9NYG5 84 aa8.81□□□□□ -1
SDC1-201ENST00000254351 IGLV7-46A0A075B6I9 117 aa8.81□□□□□ -1
SDC1-201ENST00000254351 A6NN06 94 aa8.8□□□□□ -1
SDC1-201ENST00000254351 PRAC1Q96KF2 57 aa8.79□□□□□ -1
SDC1-201ENST00000254351 DNAH3Q8TD57 4116 aa8.78□□□□□ -1
SDC1-201ENST00000254351 H3BPC8 53 aa8.78□□□□□ -1
SDC1-201ENST00000254351 SPINK6Q6UWN8 80 aa8.78□□□□□ -1
SDC1-201ENST00000254351 CDC42SE1Q9NRR8 79 aa8.78□□□□□ -1
SDC1-201ENST00000254351 IGLV8-61A0A075B6I0 122 aa8.77□□□□□ -1.01
SDC1-201ENST00000254351 A0A087X002 238 aa8.77□□□□□ -1.01
SDC1-201ENST00000254351 HRES1P13985 223 aa8.77□□□□□ -1.01
SDC1-201ENST00000254351 NOTCH2NLQ7Z3S9 236 aa8.77□□□□□ -1.01
SDC1-201ENST00000254351 PANO1I0J062 215 aa8.75□□□□□ -1.01
SDC1-201ENST00000254351 KRTAP21-3Q3LHN1 58 aa8.74□□□□□ -1.01
SDC1-201ENST00000254351 RETNLBQ9BQ08 111 aa8.74□□□□□ -1.01
SDC1-201ENST00000254351 ADM2Q7Z4H4 148 aa8.73□□□□□ -1.01
SDC1-201ENST00000254351 CDK2AP2O75956 126 aa8.71□□□□□ -1.01
SDC1-201ENST00000254351 UBE2DNLQ8IWF7 75 aa8.71□□□□□ -1.01
SDC1-201ENST00000254351 C8orf17Q9NRJ1 99 aa8.71□□□□□ -1.01
SDC1-201ENST00000254351 C7orf65Q6ZTY9 151 aa8.71□□□□□ -1.02
SDC1-201ENST00000254351 DNAH9Q9NYC9 4486 aa8.7□□□□□ -1.02
SDC1-201ENST00000254351 LINC01558Q9Y6Z2 57 aa8.7□□□□□ -1.02
SDC1-201ENST00000254351 Q96NJ1 140 aa8.67□□□□□ -1.02
SDC1-201ENST00000254351 DNHD1Q96M86 4753 aa8.67□□□□□ -1.02
SDC1-201ENST00000254351 DNAH1Q9P2D7 4330 aa8.67□□□□□ -1.02
SDC1-201ENST00000254351 LINC00313P59037 77 aa8.65□□□□□ -1.02
SDC1-201ENST00000254351 Q5W150 140 aa8.64□□□□□ -1.03
SDC1-201ENST00000254351 TP53AIP1Q9HCN2 124 aa8.63□□□□□ -1.03
SDC1-201ENST00000254351 A0A1B0GVX0 72 aa8.62□□□□□ -1.03
SDC1-201ENST00000254351 MRPL34Q9BQ48 92 aaKnown RBP8.62□□□□□ -1.03
SDC1-201ENST00000254351 SPRR1BP22528 89 aa8.61□□□□□ -1.03
SDC1-201ENST00000254351 DNAH7Q8WXX0 4024 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms