RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PLA2G2DQ9UNK4 145 aa13.42□□□□□ -0.26
TRIM28-201ENST00000253024 MPLKIPQ8TAP9 179 aa13.42□□□□□ -0.26
TRIM28-201ENST00000253024 IGLV5-37A0A075B6J1 123 aa13.39□□□□□ -0.27
TRIM28-201ENST00000253024 FAM229BQ4G0N7 80 aa13.39□□□□□ -0.27
TRIM28-201ENST00000253024 EPM2AB3EWF7 344 aa13.38□□□□□ -0.27
TRIM28-201ENST00000253024 LINC00336Q6ZUF6 198 aa13.38□□□□□ -0.27
TRIM28-201ENST00000253024 UBE2AP49459 152 aa13.38□□□□□ -0.27
TRIM28-201ENST00000253024 SERP1Q9Y6X1 66 aa13.38□□□□□ -0.27
TRIM28-201ENST00000253024 PLECQ15149 4684 aaKnown RBP13.38□□□□□ -0.27
TRIM28-201ENST00000253024 PANO1I0J062 215 aa13.38□□□□□ -0.27
TRIM28-201ENST00000253024 BCE1O60756 84 aa13.37□□□□□ -0.27
TRIM28-201ENST00000253024 TGP01266 2768 aa13.36□□□□□ -0.27
TRIM28-201ENST00000253024 C16orf90A8MZG2 172 aa13.35□□□□□ -0.27
TRIM28-201ENST00000253024 FP248Q71RG6 208 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-201ENST00000253024 A0A0U1RQV1 116 aa13.32□□□□□ -0.28
TRIM28-201ENST00000253024 PKIGQ9Y2B9 76 aa13.32□□□□□ -0.28
TRIM28-201ENST00000253024 SPRR4Q96PI1 79 aa13.31□□□□□ -0.28
TRIM28-201ENST00000253024 MDFIQ99750 246 aa13.28□□□□□ -0.28
TRIM28-201ENST00000253024 APLNQ9ULZ1 77 aa13.26□□□□□ -0.29
TRIM28-201ENST00000253024 IGLV9-49A0A0B4J1Y8 123 aa13.25□□□□□ -0.29
TRIM28-201ENST00000253024 HCG22E2RYF7 251 aa13.25□□□□□ -0.29
TRIM28-201ENST00000253024 NDUFC1O43677 76 aa13.24□□□□□ -0.29
TRIM28-201ENST00000253024 ANAPC11Q9NYG5 84 aa13.22□□□□□ -0.29
TRIM28-201ENST00000253024 PRO0628Q9UI54 55 aa13.21□□□□□ -0.29
TRIM28-201ENST00000253024 FRAS1Q86XX4 4008 aa13.21□□□□□ -0.29
TRIM28-201ENST00000253024 CNBPP62633 177 aaKnown RBP13.21□□□□□ -0.29
TRIM28-201ENST00000253024 BRK1Q8WUW1 75 aa13.21□□□□□ -0.29
TRIM28-201ENST00000253024 SMIM26A0A096LP01 95 aa13.2□□□□□ -0.3
TRIM28-201ENST00000253024 STARD9Q9P2P6 4700 aa13.18□□□□□ -0.3
TRIM28-201ENST00000253024 H0Y9J4 135 aa13.18□□□□□ -0.3
TRIM28-201ENST00000253024 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-201ENST00000253024 KMT2AQ03164 3969 aa13.16□□□□□ -0.3
TRIM28-201ENST00000253024 LINC00208Q96KT6 92 aa13.15□□□□□ -0.3
TRIM28-201ENST00000253024 NBDYA0A0U1RRE5 68 aa13.14□□□□□ -0.31
TRIM28-201ENST00000253024 C9orf163Q8N9P6 203 aa13.13□□□□□ -0.31
TRIM28-201ENST00000253024 PRKDCP78527 4128 aaKnown RBP13.13□□□□□ -0.31
TRIM28-201ENST00000253024 B9D2Q9BPU9 175 aa13.09□□□□□ -0.31
TRIM28-201ENST00000253024 CASC2Q6XLA1 102 aa13.08□□□□□ -0.31
TRIM28-201ENST00000253024 C1orf64Q8NEQ6 169 aa13.08□□□□□ -0.31
TRIM28-201ENST00000253024 C14orf177Q52M58 125 aa13.07□□□□□ -0.32
TRIM28-201ENST00000253024 A0A1B0GW54 56 aa13.06□□□□□ -0.32
TRIM28-201ENST00000253024 MEGF8Q7Z7M0 2845 aa13.04□□□□□ -0.32
TRIM28-201ENST00000253024 ATP5EP56381 51 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-201ENST00000253024 FBN3Q75N90 2809 aa13.03□□□□□ -0.32
TRIM28-201ENST00000253024 PSPHP1O15172 72 aa13.02□□□□□ -0.33
TRIM28-201ENST00000253024 H0Y9P7 68 aa13.01□□□□□ -0.33
TRIM28-201ENST00000253024 MP68P56378 58 aa13.01□□□□□ -0.33
TRIM28-201ENST00000253024 PRR15Q8IV56 129 aa13□□□□□ -0.33
TRIM28-201ENST00000253024 Q6ZRN7 208 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-201ENST00000253024 ZCCHC13Q8WW36 166 aaKnown RBP12.99□□□□□ -0.33
TRIM28-201ENST00000253024 IGLV8-61A0A075B6I0 122 aa12.99□□□□□ -0.33
TRIM28-201ENST00000253024 LINC00472Q9H8W2 130 aa12.97□□□□□ -0.33
TRIM28-201ENST00000253024 hDV103S1A0JD37 113 aa12.96□□□□□ -0.33
TRIM28-201ENST00000253024 MOBPQ13875 183 aa12.96□□□□□ -0.33
TRIM28-201ENST00000253024 NDUFS5O43920 106 aa12.96□□□□□ -0.33
TRIM28-201ENST00000253024 LCE6AA0A183 80 aa12.96□□□□□ -0.34
TRIM28-201ENST00000253024 PCOTHQ58A44 107 aa12.96□□□□□ -0.34
TRIM28-201ENST00000253024 A8MWP4 228 aa12.95□□□□□ -0.34
TRIM28-201ENST00000253024 SPINK6Q6UWN8 80 aa12.94□□□□□ -0.34
TRIM28-201ENST00000253024 DNAH2Q9P225 4427 aa12.94□□□□□ -0.34
TRIM28-201ENST00000253024 KRTAP29-1A8MX34 341 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-201ENST00000253024 IGHV6-1A0A0B4J1U7 121 aa12.93□□□□□ -0.34
TRIM28-201ENST00000253024 PSORS1C2Q9UIG4 136 aa12.93□□□□□ -0.34
TRIM28-201ENST00000253024 A0A087WTM6 91 aa12.92□□□□□ -0.34
TRIM28-201ENST00000253024 C1orf195Q5TG92 126 aa12.92□□□□□ -0.34
TRIM28-201ENST00000253024 HECTD4Q9Y4D8 3996 aa12.92□□□□□ -0.34
TRIM28-201ENST00000253024 DNHD1Q96M86 4753 aa12.91□□□□□ -0.34
TRIM28-201ENST00000253024 RTL8CO15255 209 aa12.91□□□□□ -0.34
TRIM28-201ENST00000253024 SPACA4Q8TDM5 124 aa12.9□□□□□ -0.34
TRIM28-201ENST00000253024 NUPR2A6NF83 97 aa12.9□□□□□ -0.34
TRIM28-201ENST00000253024 VPS13DQ5THJ4 4388 aa12.9□□□□□ -0.34
TRIM28-201ENST00000253024 DNAH8Q96JB1 4490 aa12.9□□□□□ -0.34
TRIM28-201ENST00000253024 TRAV22A0A0B4J277 110 aa12.9□□□□□ -0.35
TRIM28-201ENST00000253024 SPRR1BP22528 89 aa12.88□□□□□ -0.35
TRIM28-201ENST00000253024 KRTAP13-1Q8IUC0 172 aa12.87□□□□□ -0.35
TRIM28-201ENST00000253024 DYNC2H1Q8NCM8 4307 aaKnown RBP12.86□□□□□ -0.35
TRIM28-201ENST00000253024 MMP24-AS1A0A0U1RRL7 71 aa12.86□□□□□ -0.35
TRIM28-201ENST00000253024 DNAH17Q9UFH2 4485 aa12.86□□□□□ -0.35
TRIM28-201ENST00000253024 A0A087X002 238 aa12.85□□□□□ -0.35
TRIM28-201ENST00000253024 NOTCH2NLQ7Z3S9 236 aa12.85□□□□□ -0.35
TRIM28-201ENST00000253024 NDUFB1O75438 58 aa12.85□□□□□ -0.35
TRIM28-201ENST00000253024 DNAH6Q9C0G6 4158 aa12.85□□□□□ -0.35
TRIM28-201ENST00000253024 LY6G6CO95867 125 aa12.81□□□□□ -0.36
TRIM28-201ENST00000253024 V9GYY9 64 aa12.81□□□□□ -0.36
TRIM28-201ENST00000253024 Q96NJ1 140 aa12.8□□□□□ -0.36
TRIM28-201ENST00000253024 CIRBP-AS1Q8TBR5 109 aa12.79□□□□□ -0.36
TRIM28-201ENST00000253024 IGLV5-52A0A0A0MRZ9 124 aa12.79□□□□□ -0.36
TRIM28-201ENST00000253024 A8MUN3 132 aa12.78□□□□□ -0.36
TRIM28-201ENST00000253024 A8MU10 97 aa12.77□□□□□ -0.36
TRIM28-201ENST00000253024 WWC2-AS2Q96NR7 200 aa12.76□□□□□ -0.37
TRIM28-201ENST00000253024 CDK2AP2O75956 126 aa12.75□□□□□ -0.37
TRIM28-201ENST00000253024 RETNLBQ9BQ08 111 aa12.73□□□□□ -0.37
TRIM28-201ENST00000253024 C8orf17Q9NRJ1 99 aa12.72□□□□□ -0.37
TRIM28-201ENST00000253024 DNAH11Q96DT5 4516 aa12.71□□□□□ -0.37
TRIM28-201ENST00000253024 SEC61GP60059 68 aa12.7□□□□□ -0.38
TRIM28-201ENST00000253024 ZNF861PO60384 105 aa12.69□□□□□ -0.38
TRIM28-201ENST00000253024 CYP4F30PQ9H0H9 118 aa12.68□□□□□ -0.38
TRIM28-201ENST00000253024 CD164Q04900 197 aa12.66□□□□□ -0.38
TRIM28-201ENST00000253024 C1orf134Q5TEV5 83 aa12.66□□□□□ -0.38
TRIM28-201ENST00000253024 A0A1B0GVX0 72 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms