RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 A0A0U1RQV1 116 aa12.66□□□□□ -0.38
LSM4-201ENST00000252816 Q5XG85 94 aa12.66□□□□□ -0.38
LSM4-201ENST00000252816 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.66□□□□□ -0.38
LSM4-201ENST00000252816 CEND1Q8N111 149 aa12.66□□□□□ -0.38
LSM4-201ENST00000252816 F8WEM9 126 aa12.65□□□□□ -0.38
LSM4-201ENST00000252816 TMA7Q9Y2S6 64 aaKnown RBP12.65□□□□□ -0.38
LSM4-201ENST00000252816 XP32Q5T750 250 aa12.64□□□□□ -0.39
LSM4-201ENST00000252816 FXYD2P54710 66 aa12.61□□□□□ -0.39
LSM4-201ENST00000252816 C1orf195Q5TG92 126 aa12.61□□□□□ -0.39
LSM4-201ENST00000252816 IGLV8-61A0A075B6I0 122 aa12.6□□□□□ -0.39
LSM4-201ENST00000252816 SEC61BP60468 96 aaKnown RBP12.59□□□□□ -0.39
LSM4-201ENST00000252816 FAM218AQ96MZ4 157 aa12.59□□□□□ -0.39
LSM4-201ENST00000252816 FAT4Q6V0I7 4981 aa12.59□□□□□ -0.39
LSM4-201ENST00000252816 OCIAD2Q56VL3 154 aa12.58□□□□□ -0.4
LSM4-201ENST00000252816 PPDPFLQ8WWR9 84 aa12.58□□□□□ -0.4
LSM4-201ENST00000252816 TMEM238LA0A1B0GVL6 79 aa12.57□□□□□ -0.4
LSM4-201ENST00000252816 A6NJY4 79 aa12.57□□□□□ -0.4
LSM4-201ENST00000252816 Q6JHZ5 121 aa12.57□□□□□ -0.4
LSM4-201ENST00000252816 IGFL1Q6UW32 110 aa12.57□□□□□ -0.4
LSM4-201ENST00000252816 KRTAP4-1Q9BYQ7 146 aa12.57□□□□□ -0.4
LSM4-201ENST00000252816 PRO1854Q9UHT4 67 aa12.57□□□□□ -0.4
LSM4-201ENST00000252816 C9orf92A6NGG3 77 aa12.56□□□□□ -0.4
LSM4-201ENST00000252816 H0YGX0 51 aa12.56□□□□□ -0.4
LSM4-201ENST00000252816 CLEC2BQ92478 149 aa12.55□□□□□ -0.4
LSM4-201ENST00000252816 SNHG12Q9BXW3 62 aa12.54□□□□□ -0.4
LSM4-201ENST00000252816 TCL1BO95988 128 aa12.52□□□□□ -0.41
LSM4-201ENST00000252816 H3BUT2 72 aa12.51□□□□□ -0.41
LSM4-201ENST00000252816 HSD52Q0P140 79 aa12.51□□□□□ -0.41
LSM4-201ENST00000252816 TRBV7-7A0A0K0K1E9 115 aa12.5□□□□□ -0.41
LSM4-201ENST00000252816 SNCGO76070 127 aa12.49□□□□□ -0.41
LSM4-201ENST00000252816 LCE2AQ5TA79 106 aaPredicted RBP12.49□□□□□ -0.41
LSM4-201ENST00000252816 TRIAP1O43715 76 aa12.48□□□□□ -0.41
LSM4-201ENST00000252816 K7ERJ3 54 aa12.46□□□□□ -0.41
LSM4-201ENST00000252816 UQCR10Q9UDW1 63 aa12.45□□□□□ -0.42
LSM4-201ENST00000252816 A0A1B0GX51 115 aa12.44□□□□□ -0.42
LSM4-201ENST00000252816 NDUFV3P56181 108 aaKnown RBP12.43□□□□□ -0.42
LSM4-201ENST00000252816 PCOTHQ58A44 107 aa12.41□□□□□ -0.42
LSM4-201ENST00000252816 FABP2P12104 132 aa12.37□□□□□ -0.43
LSM4-201ENST00000252816 PSMB2P49721 201 aa12.36□□□□□ -0.43
LSM4-201ENST00000252816 H3BMG7 143 aa12.35□□□□□ -0.43
LSM4-201ENST00000252816 Q6Q795 121 aa12.35□□□□□ -0.43
LSM4-201ENST00000252816 GHRHP01286 108 aa12.34□□□□□ -0.43
LSM4-201ENST00000252816 TEN1Q86WV5 123 aa12.32□□□□□ -0.44
LSM4-201ENST00000252816 LST1O00453 97 aa12.31□□□□□ -0.44
LSM4-201ENST00000252816 RPL37P61927 97 aaKnown RBP12.31□□□□□ -0.44
LSM4-201ENST00000252816 DNAL4O96015 105 aa12.3□□□□□ -0.44
LSM4-201ENST00000252816 COX6CP09669 75 aa12.3□□□□□ -0.44
LSM4-201ENST00000252816 ORMDL1Q9P0S3 153 aa12.29□□□□□ -0.44
LSM4-201ENST00000252816 SS18L2Q9UHA2 77 aa12.27□□□□□ -0.45
LSM4-201ENST00000252816 A0A087WSZ3 146 aa12.26□□□□□ -0.45
LSM4-201ENST00000252816 A0A1W2PNM2 257 aa12.25□□□□□ -0.45
LSM4-201ENST00000252816 A0A1B0GV72 72 aa12.23□□□□□ -0.45
LSM4-201ENST00000252816 OBSCN-AS1Q96MR7 158 aa12.23□□□□□ -0.45
LSM4-201ENST00000252816 H3BQ85 93 aa12.22□□□□□ -0.45
LSM4-201ENST00000252816 KRTAP19-2Q3LHN2 52 aa12.22□□□□□ -0.45
LSM4-201ENST00000252816 LCE2CQ5TA81 110 aa12.22□□□□□ -0.45
LSM4-201ENST00000252816 TMEM256-PLSCR3K7ERE1 68 aa12.21□□□□□ -0.45
LSM4-201ENST00000252816 Q96NJ1 140 aa12.2□□□□□ -0.46
LSM4-201ENST00000252816 TRACP01848 142 aa12.19□□□□□ -0.46
LSM4-201ENST00000252816 SCGB1C2P0DMR2 95 aa12.19□□□□□ -0.46
LSM4-201ENST00000252816 ANKRD29Q8N6D5 301 aa12.19□□□□□ -0.46
LSM4-201ENST00000252816 SMIM6P0DI80 62 aa12.16□□□□□ -0.46
LSM4-201ENST00000252816 UBE2V1Q13404 147 aa12.16□□□□□ -0.46
LSM4-201ENST00000252816 TRBV7-4A0A0J9YYF1 115 aa12.14□□□□□ -0.47
LSM4-201ENST00000252816 Q75L30 129 aa12.13□□□□□ -0.47
LSM4-201ENST00000252816 M0R143 59 aa12.12□□□□□ -0.47
LSM4-201ENST00000252816 CCKP06307 115 aa12.09□□□□□ -0.47
LSM4-201ENST00000252816 NAA38Q9BRA0 125 aaKnown RBP12.08□□□□□ -0.48
LSM4-201ENST00000252816 KRTAP9-2Q9BYQ4 174 aa12.08□□□□□ -0.48
LSM4-201ENST00000252816 SIGMAR1Q99720 223 aa12.06□□□□□ -0.48
LSM4-201ENST00000252816 BAALC-AS2P0C853 105 aa12.05□□□□□ -0.48
LSM4-201ENST00000252816 ATP11AUNQ6ZP68 121 aa12.05□□□□□ -0.48
LSM4-201ENST00000252816 DSCR10P59022 87 aa12.04□□□□□ -0.48
LSM4-201ENST00000252816 MT1HP80294 61 aa12.04□□□□□ -0.48
LSM4-201ENST00000252816 C20orf166-AS1Q96NR2 134 aa12.04□□□□□ -0.48
LSM4-201ENST00000252816 RBM3P98179 157 aaKnown RBP12.03□□□□□ -0.48
LSM4-201ENST00000252816 IGKV4-1P06312 121 aa12.02□□□□□ -0.49
LSM4-201ENST00000252816 LINC00472Q9H8W2 130 aa12.02□□□□□ -0.49
LSM4-201ENST00000252816 A8MUU9 505 aa12.01□□□□□ -0.49
LSM4-201ENST00000252816 DEFB116Q30KQ4 102 aa12□□□□□ -0.49
LSM4-201ENST00000252816 ATXN8Q156A1 80 aa11.99□□□□□ -0.49
LSM4-201ENST00000252816 DSCR8Q96T75 97 aa11.99□□□□□ -0.49
LSM4-201ENST00000252816 VPS25Q9BRG1 176 aa11.99□□□□□ -0.49
LSM4-201ENST00000252816 LOC105371267A0A1B0GV96 52 aa11.98□□□□□ -0.49
LSM4-201ENST00000252816 TSTD3H0UI37 97 aa11.97□□□□□ -0.49
LSM4-201ENST00000252816 LINC00313P59037 77 aa11.94□□□□□ -0.5
LSM4-201ENST00000252816 NOTCH2NLQ7Z3S9 236 aa11.94□□□□□ -0.5
LSM4-201ENST00000252816 C9JAW5 83 aa11.93□□□□□ -0.5
LSM4-201ENST00000252816 KRTAP16-1A8MUX0 517 aa11.92□□□□□ -0.5
LSM4-201ENST00000252816 BATFQ16520 125 aa11.92□□□□□ -0.5
LSM4-201ENST00000252816 COX6B2Q6YFQ2 88 aa11.91□□□□□ -0.5
LSM4-201ENST00000252816 FLGP20930 4061 aaPredicted RBP11.88□□□□□ -0.51
LSM4-201ENST00000252816 IGHV6-1A0A0B4J1U7 121 aa11.87□□□□□ -0.51
LSM4-201ENST00000252816 LYRM7Q5U5X0 104 aa11.86□□□□□ -0.51
LSM4-201ENST00000252816 Q6ZQT0 140 aa11.86□□□□□ -0.51
LSM4-201ENST00000252816 JMJD7-PLA2G4BH0Y9G9 81 aa11.85□□□□□ -0.51
LSM4-201ENST00000252816 TRBV20-1A0A075B6N2 111 aa11.83□□□□□ -0.52
LSM4-201ENST00000252816 LOC110117498A0A087WWA1 95 aa11.83□□□□□ -0.52
LSM4-201ENST00000252816 A0A1B0GVX0 72 aa11.81□□□□□ -0.52
LSM4-201ENST00000252816 C21orf62-AS1Q17RA5 79 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms