RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 PAM16Q9Y3D7 125 aa5.95□□□□□ -1.46
SCN1A-222ENST00000642141 TRBV10-3A0A0K0K1G6 114 aa5.94□□□□□ -1.46
SCN1A-222ENST00000642141 A0A1B0GV90 55 aa5.94□□□□□ -1.46
SCN1A-222ENST00000642141 SMCR5Q8TEV8 140 aa5.94□□□□□ -1.46
SCN1A-222ENST00000642141 ETDCA0A1B0GVM5 59 aa5.93□□□□□ -1.46
SCN1A-222ENST00000642141 SYS1-DBNDD2H3BUS1 97 aa5.93□□□□□ -1.46
SCN1A-222ENST00000642141 PRYO14603 147 aa5.93□□□□□ -1.46
SCN1A-222ENST00000642141 LEPROTO15243 131 aa5.93□□□□□ -1.46
SCN1A-222ENST00000642141 IGLV7-46A0A075B6I9 117 aa5.92□□□□□ -1.46
SCN1A-222ENST00000642141 J3QQQ9 107 aa5.92□□□□□ -1.46
SCN1A-222ENST00000642141 DPM2O94777 84 aa5.92□□□□□ -1.46
SCN1A-222ENST00000642141 PLNP26678 52 aa5.92□□□□□ -1.46
SCN1A-222ENST00000642141 NPC2P61916 151 aa5.92□□□□□ -1.46
SCN1A-222ENST00000642141 KCNQ1DNQ9H478 68 aa5.92□□□□□ -1.46
SCN1A-222ENST00000642141 DLEU1O43261 78 aa5.91□□□□□ -1.46
SCN1A-222ENST00000642141 C4orf48Q5BLP8 95 aa5.91□□□□□ -1.46
SCN1A-222ENST00000642141 LINC01545Q5VT33 79 aa5.91□□□□□ -1.46
SCN1A-222ENST00000642141 LINC00337Q8N6G1 96 aa5.91□□□□□ -1.46
SCN1A-222ENST00000642141 KRTAP4-16G5E9R7 235 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-222ENST00000642141 ERC2-IT1O76042 136 aa5.9□□□□□ -1.46
SCN1A-222ENST00000642141 IGKCP01834 107 aa5.9□□□□□ -1.46
SCN1A-222ENST00000642141 LGALS3P17931 250 aaKnown RBP5.9□□□□□ -1.46
SCN1A-222ENST00000642141 SPRR1AP35321 89 aa5.9□□□□□ -1.46
SCN1A-222ENST00000642141 HERVK_113P61574 105 aa5.9□□□□□ -1.46
SCN1A-222ENST00000642141 GAGE2AQ6NT46 116 aa5.9□□□□□ -1.46
SCN1A-222ENST00000642141 SLC25A34Q6PIV7 304 aa5.9□□□□□ -1.46
SCN1A-222ENST00000642141 Q8NBF4 154 aa5.9□□□□□ -1.46
SCN1A-222ENST00000642141 CDIP1Q9H305 208 aa5.9□□□□□ -1.46
SCN1A-222ENST00000642141 ZNF706Q9Y5V0 76 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-222ENST00000642141 B5MCH6 92 aa5.89□□□□□ -1.47
SCN1A-222ENST00000642141 EIF4EBP3O60516 100 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-222ENST00000642141 IGLV9-49A0A0B4J1Y8 123 aa5.88□□□□□ -1.47
SCN1A-222ENST00000642141 S100A7L2Q5SY68 101 aa5.88□□□□□ -1.47
SCN1A-222ENST00000642141 ADAMTSL4-AS1Q5T5F5 129 aa5.88□□□□□ -1.47
SCN1A-222ENST00000642141 SOSTDC1Q6X4U4 206 aa5.87□□□□□ -1.47
SCN1A-222ENST00000642141 Q9BRP9 147 aa5.87□□□□□ -1.47
SCN1A-222ENST00000642141 LOC107984156A0A0G2JMH3 177 aa5.86□□□□□ -1.47
SCN1A-222ENST00000642141 A0A0J9YXY3 114 aa5.86□□□□□ -1.47
SCN1A-222ENST00000642141 COX8AP10176 69 aa5.86□□□□□ -1.47
SCN1A-222ENST00000642141 NMUP48645 174 aa5.86□□□□□ -1.47
SCN1A-222ENST00000642141 MOBPQ13875 183 aa5.86□□□□□ -1.47
SCN1A-222ENST00000642141 SPAG11AQ6PDA7 123 aa5.86□□□□□ -1.47
SCN1A-222ENST00000642141 ARL17AQ8IVW1 177 aa5.86□□□□□ -1.47
SCN1A-222ENST00000642141 SPANXB1Q9NS25 103 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-222ENST00000642141 TRBV10-2A0A0K0K1G8 114 aa5.85□□□□□ -1.47
SCN1A-222ENST00000642141 TPRXLQ17RH7 258 aa5.85□□□□□ -1.47
SCN1A-222ENST00000642141 IGLV6-57P01721 117 aa5.84□□□□□ -1.47
SCN1A-222ENST00000642141 UBE2V1Q13404 147 aa5.84□□□□□ -1.47
SCN1A-222ENST00000642141 LINC00483Q53H64 154 aa5.84□□□□□ -1.47
SCN1A-222ENST00000642141 Q6ZRX8 168 aa5.84□□□□□ -1.47
SCN1A-222ENST00000642141 CBY1Q9Y3M2 126 aa5.84□□□□□ -1.47
SCN1A-222ENST00000642141 TRAV23DV6A0A075B6W5 121 aa5.83□□□□□ -1.48
SCN1A-222ENST00000642141 A6NDN8 102 aa5.83□□□□□ -1.48
SCN1A-222ENST00000642141 E9PLD3 99 aa5.83□□□□□ -1.48
SCN1A-222ENST00000642141 ST20-AS1Q8NBB2 130 aa5.83□□□□□ -1.48
SCN1A-222ENST00000642141 HIGD1BQ9P298 99 aa5.83□□□□□ -1.48
SCN1A-222ENST00000642141 A0A0U1RQV1 116 aa5.82□□□□□ -1.48
SCN1A-222ENST00000642141 NDUFC2O95298 119 aa5.82□□□□□ -1.48
SCN1A-222ENST00000642141 OR13C6PQ8NH95 151 aa5.82□□□□□ -1.48
SCN1A-222ENST00000642141 TTTY13Q9BZ97 58 aa5.82□□□□□ -1.48
SCN1A-222ENST00000642141 ZNF73O43830 326 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-222ENST00000642141 SPINK1P00995 79 aa5.81□□□□□ -1.48
SCN1A-222ENST00000642141 BATFQ16520 125 aa5.81□□□□□ -1.48
SCN1A-222ENST00000642141 HINT1P49773 126 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-222ENST00000642141 HSD52Q0P140 79 aa5.8□□□□□ -1.48
SCN1A-222ENST00000642141 TAL2Q16559 108 aa5.8□□□□□ -1.48
SCN1A-222ENST00000642141 BVES-AS1Q5T3Y7 98 aa5.8□□□□□ -1.48
SCN1A-222ENST00000642141 C9orf153Q5TBE3 101 aa5.8□□□□□ -1.48
SCN1A-222ENST00000642141 ATOH7Q8N100 152 aa5.8□□□□□ -1.48
SCN1A-222ENST00000642141 LINC00308Q8TCZ7 52 aa5.8□□□□□ -1.48
SCN1A-222ENST00000642141 LITAFQ99732 161 aa5.8□□□□□ -1.48
SCN1A-222ENST00000642141 MUC17Q685J3 4493 aa5.79□□□□□ -1.48
SCN1A-222ENST00000642141 ZNF815PA8K554 130 aa5.79□□□□□ -1.48
SCN1A-222ENST00000642141 KRTAP13-3Q3SY46 172 aa5.79□□□□□ -1.48
SCN1A-222ENST00000642141 GTF2H5Q6ZYL4 71 aa5.79□□□□□ -1.48
SCN1A-222ENST00000642141 FP248Q71RG6 208 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-222ENST00000642141 FAT4Q6V0I7 4981 aa5.78□□□□□ -1.48
SCN1A-222ENST00000642141 SSBP3-AS1Q7Z2R9 100 aa5.78□□□□□ -1.48
SCN1A-222ENST00000642141 Q8N377 158 aa5.78□□□□□ -1.48
SCN1A-222ENST00000642141 LOC100996750A0A140TA64 210 aa5.77□□□□□ -1.49
SCN1A-222ENST00000642141 HRCT1Q6UXD1 115 aa5.77□□□□□ -1.49
SCN1A-222ENST00000642141 KRTAP4-6Q9BYQ5 205 aa5.77□□□□□ -1.49
SCN1A-222ENST00000642141 SPANXCQ9NY87 97 aa5.77□□□□□ -1.49
SCN1A-222ENST00000642141 TAX1BP3O14907 124 aa5.76□□□□□ -1.49
SCN1A-222ENST00000642141 VAMP3Q15836 100 aa5.76□□□□□ -1.49
SCN1A-222ENST00000642141 DEFB105AQ8NG35 78 aa5.76□□□□□ -1.49
SCN1A-222ENST00000642141 C9orf118A6NHY6 69 aa5.75□□□□□ -1.49
SCN1A-222ENST00000642141 SLC25A20O43772 301 aa5.75□□□□□ -1.49
SCN1A-222ENST00000642141 TIMM17BO60830 172 aa5.75□□□□□ -1.49
SCN1A-222ENST00000642141 C2orf91Q6ZV80 131 aa5.75□□□□□ -1.49
SCN1A-222ENST00000642141 K7ERU9 68 aa5.74□□□□□ -1.49
SCN1A-222ENST00000642141 C6orf99Q4VX62 202 aa5.74□□□□□ -1.49
SCN1A-222ENST00000642141 COX7BP24311 80 aa5.73□□□□□ -1.49
SCN1A-222ENST00000642141 ANKRD39Q53RE8 183 aa5.73□□□□□ -1.49
SCN1A-222ENST00000642141 SCGB1D4Q6XE38 83 aa5.73□□□□□ -1.49
SCN1A-222ENST00000642141 SPANXDQ9BXN6 97 aa5.73□□□□□ -1.49
SCN1A-222ENST00000642141 KRTAP4-1Q9BYQ7 146 aa5.73□□□□□ -1.49
SCN1A-222ENST00000642141 Q1RN00 199 aa5.72□□□□□ -1.49
SCN1A-222ENST00000642141 ASB16-AS1Q495Z4 193 aa5.72□□□□□ -1.49
SCN1A-222ENST00000642141 DHRS4-AS1Q9P1J3 65 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms