RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 GNGT1P63211 74 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 CCDC58Q4VC31 144 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 NMSQ5H8A3 153 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 PSMG4Q5JS54 123 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 TRGV9Q99603 122 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 MAPKBP1O60336 1514 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 ROCK2O75116 1388 aaKnown RBP-0.6□□□□□ -2.51
VPS35-212ENST00000640313 MYH7P12883 1935 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 MAGI2Q86UL8 1455 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 NRXN1Q9ULB1 1477 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 LRRC37AA6NMS7 1700 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 SPTAN1Q13813 2472 aaKnown RBP-0.61□□□□□ -2.51
VPS35-212ENST00000640313 NAIPQ13075 1403 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 ANKRD50Q9ULJ7 1429 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 TOPAZ1Q8N9V7 1692 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 CRYM-AS1A6NIL9 109 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 PRLHP81277 87 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 C1orf54Q8WWF1 131 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 VAMP8Q9BV40 100 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 PSENENQ9NZ42 101 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 TARBP1Q13395 1621 aaKnown RBP-0.61□□□□□ -2.51
VPS35-212ENST00000640313 KIAA1551Q9HCM1 1747 aa-0.61□□□□□ -2.51
VPS35-212ENST00000640313 MGAQ8IWI9 3026 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 CUX1P39880 1505 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 ARHGAP5Q13017 1502 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 PDCD11Q14690 1871 aaKnown RBP-0.62□□□□□ -2.51
VPS35-212ENST00000640313 K7EP34 96 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 CORTO00230 105 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 DLEU1O43261 78 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 SNAPC5O75971 98 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 MT1EP04732 61 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 COX7BP24311 80 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 KRTDAPP60985 99 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 PPP3R1P63098 170 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 DEFB110Q30KQ9 67 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 SVBPQ8N300 66 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 NUP188Q5SRE5 1749 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 KNDC1Q76NI1 1749 aa-0.62□□□□□ -2.51
VPS35-212ENST00000640313 COL14A1Q05707 1796 aaKnown RBP-0.62□□□□□ -2.51
VPS35-212ENST00000640313 CFAP54Q96N23 3096 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 PRDM15P57071 1507 aaPredicted RBP-0.63□□□□□ -2.51
VPS35-212ENST00000640313 TOP2BQ02880 1626 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 A0A1B0GV90 55 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 NDUFC1O43677 76 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 MPC2O95563 127 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 HMGN1P05114 100 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 C3orf79P0CE67 100 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 MT1HL1P0DM35 61 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 GNG4P50150 75 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 HMGN3Q15651 99 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 PMCHL1Q16048 86 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 ALKAL2Q6UX46 152 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 PRO3102Q9H379 93 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 UBE2D4Q9Y2X8 147 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 MYOM2P54296 1465 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 VPS13CQ709C8 3753 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 ATMQ13315 3056 aa-0.63□□□□□ -2.51
VPS35-212ENST00000640313 PZPP20742 1482 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 MLH3Q9UHC1 1453 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 F8WEM9 126 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 GNGT2O14610 69 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 LEPROTL1O95214 131 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 MT-ATP8P03928 68 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 LINC00158P58513 81 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 S100A12P80511 92 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 RPL13AP3Q6NVV1 102 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 KRTAP8-1Q8IUC2 63 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 SERP2Q8N6R1 65 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 MT1LQ93083 61 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 TSC22D3Q99576 134 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 FAM107BQ9H098 131 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 AP4S1Q9Y587 144 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 ANKRD36A6QL64 1941 aa-0.64□□□□□ -2.51
VPS35-212ENST00000640313 WIZO95785 1651 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 SHPRHQ149N8 1683 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 PLXNC1O60486 1568 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 RAPGEF2Q9Y4G8 1499 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 TCHHQ07283 1943 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 ANKRD36BQ8N2N9 1353 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 D6R8Y8 96 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 LYNX1G3V0Z9 82 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 UQCRHP07919 91 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 DEFB130BP0DP73 79 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 DEFB130AP0DP74 79 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 MUSTN1Q8IVN3 82 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 C2orf88Q9BSF0 95 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 SPHKAPQ2M3C7 1700 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 BCORQ6W2J9 1755 aa-0.65□□□□□ -2.51
VPS35-212ENST00000640313 TRAV21A0A0B4J279 112 aa-0.66□□□□□ -2.52
VPS35-212ENST00000640313 LCE6AA0A183 80 aa-0.66□□□□□ -2.52
VPS35-212ENST00000640313 TMEM218A2RU14 115 aa-0.66□□□□□ -2.52
VPS35-212ENST00000640313 LINC00587B1AMM8 73 aa-0.66□□□□□ -2.52
VPS35-212ENST00000640313 S100A1P23297 94 aa-0.66□□□□□ -2.52
VPS35-212ENST00000640313 MRPS10P82664 201 aaKnown RBP-0.66□□□□□ -2.52
VPS35-212ENST00000640313 ETDBQ3ZM63 59 aa-0.66□□□□□ -2.52
VPS35-212ENST00000640313 GAFA1Q96PS6 74 aa-0.66□□□□□ -2.52
VPS35-212ENST00000640313 FAM135AQ9P2D6 1515 aa-0.66□□□□□ -2.52
VPS35-212ENST00000640313 CUL7Q14999 1698 aa-0.66□□□□□ -2.52
VPS35-212ENST00000640313 PREX1Q8TCU6 1659 aa-0.66□□□□□ -2.52
VPS35-212ENST00000640313 C4AP0C0L4 1744 aa-0.67□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms