RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 C4orf48Q5BLP8 95 aa9.17□□□□□ -0.94
CLN3-264ENST00000637985 LINC00483Q53H64 154 aa9.16□□□□□ -0.94
CLN3-264ENST00000637985 A0A0J9YXY3 114 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 SYS1-DBNDD2H3BUS1 97 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 HIST1H2BKO60814 126 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 IGLV6-57P01721 117 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 HIST1H2BJP06899 126 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 HIST1H2BOP23527 126 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 HIST1H2BBP33778 126 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 HIST1H2BDP58876 126 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 HIST1H2BCP62807 126 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 HIST2H2BEQ16778 126 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.15□□□□□ -0.94
CLN3-264ENST00000637985 S100A7L2Q5SY68 101 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 HIST1H2BHQ93079 126 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 HIST1H2BNQ99877 126 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 HIST1H2BMQ99879 126 aa9.15□□□□□ -0.94
CLN3-264ENST00000637985 ADAMTSL4-AS1Q5T5F5 129 aa9.13□□□□□ -0.95
CLN3-264ENST00000637985 Q6ZRX8 168 aa9.13□□□□□ -0.95
CLN3-264ENST00000637985 Q8NBF4 154 aa9.13□□□□□ -0.95
CLN3-264ENST00000637985 GAGE2AQ6NT46 116 aa9.12□□□□□ -0.95
CLN3-264ENST00000637985 SOSTDC1Q6X4U4 206 aa9.12□□□□□ -0.95
CLN3-264ENST00000637985 Q9BRP9 147 aa9.12□□□□□ -0.95
CLN3-264ENST00000637985 TRAV23DV6A0A075B6W5 121 aa9.11□□□□□ -0.95
CLN3-264ENST00000637985 ERC2-IT1O76042 136 aa9.11□□□□□ -0.95
CLN3-264ENST00000637985 JOSD1Q15040 202 aaPredicted RBP9.11□□□□□ -0.95
CLN3-264ENST00000637985 LINC01545Q5VT33 79 aa9.11□□□□□ -0.95
CLN3-264ENST00000637985 PET117Q6UWS5 81 aa9.11□□□□□ -0.95
CLN3-264ENST00000637985 CBY1Q9Y3M2 126 aa9.11□□□□□ -0.95
CLN3-264ENST00000637985 SPINK1P00995 79 aa9.1□□□□□ -0.95
CLN3-264ENST00000637985 NPC2P61916 151 aa9.1□□□□□ -0.95
CLN3-264ENST00000637985 EIF4EBP3O60516 100 aaPredicted RBP9.09□□□□□ -0.95
CLN3-264ENST00000637985 TIMM17BO60830 172 aa9.09□□□□□ -0.95
CLN3-264ENST00000637985 SSBP3-AS1Q7Z2R9 100 aa9.09□□□□□ -0.95
CLN3-264ENST00000637985 ZNF73O43830 326 aaPredicted RBP9.08□□□□□ -0.96
CLN3-264ENST00000637985 HINT1P49773 126 aaPredicted RBP9.07□□□□□ -0.96
CLN3-264ENST00000637985 LINC00308Q8TCZ7 52 aa9.07□□□□□ -0.96
CLN3-264ENST00000637985 LITAFQ99732 161 aa9.07□□□□□ -0.96
CLN3-264ENST00000637985 SPANXCQ9NY87 97 aa9.07□□□□□ -0.96
CLN3-264ENST00000637985 IGLV9-49A0A0B4J1Y8 123 aa9.06□□□□□ -0.96
CLN3-264ENST00000637985 MOBPQ13875 183 aa9.06□□□□□ -0.96
CLN3-264ENST00000637985 XP32Q5T750 250 aa9.06□□□□□ -0.96
CLN3-264ENST00000637985 C5orf52A6NGY3 159 aa9.05□□□□□ -0.96
CLN3-264ENST00000637985 ZNF815PA8K554 130 aa9.05□□□□□ -0.96
CLN3-264ENST00000637985 RPS29P62273 56 aaKnown RBP9.05□□□□□ -0.96
CLN3-264ENST00000637985 C3orf79P0CE67 100 aa9.04□□□□□ -0.96
CLN3-264ENST00000637985 COA6Q5JTJ3 125 aaKnown RBP9.04□□□□□ -0.96
CLN3-264ENST00000637985 OR13C6PQ8NH95 151 aa9.03□□□□□ -0.96
CLN3-264ENST00000637985 SSPOA2VEC9 5147 aa9.02□□□□□ -0.97
CLN3-264ENST00000637985 LINC00518Q8N0U6 118 aa9.01□□□□□ -0.97
CLN3-264ENST00000637985 SPANXDQ9BXN6 97 aa9.01□□□□□ -0.97
CLN3-264ENST00000637985 KRTDAPP60985 99 aa9□□□□□ -0.97
CLN3-264ENST00000637985 C9orf153Q5TBE3 101 aa8.99□□□□□ -0.97
CLN3-264ENST00000637985 Q8N377 158 aa8.99□□□□□ -0.97
CLN3-264ENST00000637985 ST20-AS1Q8NBB2 130 aa8.99□□□□□ -0.97
CLN3-264ENST00000637985 TTTY13Q9BZ97 58 aa8.99□□□□□ -0.97
CLN3-264ENST00000637985 DHRS4-AS1Q9P1J3 65 aa8.99□□□□□ -0.97
CLN3-264ENST00000637985 C20orf202A1L168 122 aa8.98□□□□□ -0.97
CLN3-264ENST00000637985 SLC25A20O43772 301 aa8.98□□□□□ -0.97
CLN3-264ENST00000637985 USH2AO75445 5202 aa8.98□□□□□ -0.97
CLN3-264ENST00000637985 COPS9Q8WXC6 57 aa8.97□□□□□ -0.97
CLN3-264ENST00000637985 FLGP20930 4061 aaPredicted RBP8.97□□□□□ -0.97
CLN3-264ENST00000637985 M0R2T5 61 aa8.96□□□□□ -0.98
CLN3-264ENST00000637985 SPRR1BP22528 89 aa8.96□□□□□ -0.98
CLN3-264ENST00000637985 AKR1D1P51857 326 aa8.96□□□□□ -0.98
CLN3-264ENST00000637985 SLC25A34Q6PIV7 304 aa8.96□□□□□ -0.98
CLN3-264ENST00000637985 SCGB1D4Q6XE38 83 aa8.96□□□□□ -0.98
CLN3-264ENST00000637985 ELOF1P60002 83 aaKnown RBP8.95□□□□□ -0.98
CLN3-264ENST00000637985 IFITM1P13164 125 aa8.94□□□□□ -0.98
CLN3-264ENST00000637985 COX7BP24311 80 aa8.94□□□□□ -0.98
CLN3-264ENST00000637985 Q6ZVH6 145 aa8.94□□□□□ -0.98
CLN3-264ENST00000637985 C6orf99Q4VX62 202 aa8.93□□□□□ -0.98
CLN3-264ENST00000637985 ANKRD39Q53RE8 183 aa8.93□□□□□ -0.98
CLN3-264ENST00000637985 IGLV8-61A0A075B6I0 122 aa8.92□□□□□ -0.98
CLN3-264ENST00000637985 TRBV7-6A0A0J9YX20 115 aa8.92□□□□□ -0.98
CLN3-264ENST00000637985 LAMTOR3Q9UHA4 124 aa8.92□□□□□ -0.98
CLN3-264ENST00000637985 FCGBPQ9Y6R7 5405 aaPredicted RBP8.9□□□□□ -0.98
CLN3-264ENST00000637985 PCOTHQ58A44 107 aa8.9□□□□□ -0.98
CLN3-264ENST00000637985 ATOH7Q8N100 152 aa8.9□□□□□ -0.98
CLN3-264ENST00000637985 SNRPEP62304 92 aaKnown RBP8.89□□□□□ -0.99
CLN3-264ENST00000637985 A0A1B0GWB2 263 aa8.88□□□□□ -0.99
CLN3-264ENST00000637985 TAL2Q16559 108 aa8.88□□□□□ -0.99
CLN3-264ENST00000637985 PCP2Q8IVA1 136 aa8.88□□□□□ -0.99
CLN3-264ENST00000637985 A6NDN8 102 aa8.87□□□□□ -0.99
CLN3-264ENST00000637985 MUSTN1Q8IVN3 82 aa8.87□□□□□ -0.99
CLN3-264ENST00000637985 LIMD2Q9BT23 127 aa8.87□□□□□ -0.99
CLN3-264ENST00000637985 SYNE2Q8WXH0 6885 aaKnown RBP8.87□□□□□ -0.99
CLN3-264ENST00000637985 TEX49A0A1B0GTD5 131 aa8.86□□□□□ -0.99
CLN3-264ENST00000637985 DEFB105AQ8NG35 78 aa8.85□□□□□ -0.99
CLN3-264ENST00000637985 TRAV13-2A0A0B4J235 113 aa8.84□□□□□ -0.99
CLN3-264ENST00000637985 A4D1N5 150 aa8.84□□□□□ -0.99
CLN3-264ENST00000637985 CD164Q04900 197 aa8.83□□□□□ -1
CLN3-264ENST00000637985 Q1RN00 199 aa8.83□□□□□ -1
CLN3-264ENST00000637985 HRCT1Q6UXD1 115 aa8.83□□□□□ -1
CLN3-264ENST00000637985 PRO1933Q9H354 126 aa8.83□□□□□ -1
CLN3-264ENST00000637985 MACF1Q9UPN3 7388 aaKnown RBP8.83□□□□□ -1
CLN3-264ENST00000637985 IGLV5-48A0A075B6I7 105 aa8.81□□□□□ -1
CLN3-264ENST00000637985 S100A1P23297 94 aa8.81□□□□□ -1
CLN3-264ENST00000637985 S100A2P29034 98 aa8.81□□□□□ -1
CLN3-264ENST00000637985 HIST3H2BBQ8N257 126 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms