RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-256	ENST00000637107	LINC00575	Q6W349	94 aa		11.22	□□□□□ -0.61
CLN3-256	ENST00000637107	SNCG	O76070	127 aa		11.21	□□□□□ -0.61
CLN3-256	ENST00000637107	GAGE2E	Q4V326	116 aa		11.21	□□□□□ -0.62
CLN3-256	ENST00000637107	GAGE2D	Q9UEU5	116 aa		11.21	□□□□□ -0.62
CLN3-256	ENST00000637107		Q6ZRP5	223 aa		11.2	□□□□□ -0.62
CLN3-256	ENST00000637107	TRAV23DV6	A0A075B6W5	121 aa		11.19	□□□□□ -0.62
CLN3-256	ENST00000637107		M0R378	163 aa		11.19	□□□□□ -0.62
CLN3-256	ENST00000637107	FUS	P35637	526 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
CLN3-256	ENST00000637107	C14orf132	Q9NPU4	83 aa		11.18	□□□□□ -0.62
CLN3-256	ENST00000637107	DNAH5	Q8TE73	4624 aa		11.18	□□□□□ -0.62
CLN3-256	ENST00000637107	USP17L23	D6RBM5	183 aa		11.17	□□□□□ -0.62
CLN3-256	ENST00000637107	hADV29S1	A0JD25	119 aa		11.17	□□□□□ -0.62
CLN3-256	ENST00000637107	KRTAP10-2	P60368	255 aa		11.17	□□□□□ -0.62
CLN3-256	ENST00000637107	GAGE2A	Q6NT46	116 aa		11.17	□□□□□ -0.62
CLN3-256	ENST00000637107	DIRC1	Q969H9	104 aa		11.17	□□□□□ -0.62
CLN3-256	ENST00000637107	TMEM256-PLSCR3	K7ERE1	68 aa		11.16	□□□□□ -0.62
CLN3-256	ENST00000637107	ZNF73	O43830	326 aa	Predicted RBP	11.15	□□□□□ -0.62
CLN3-256	ENST00000637107	GAGE2B	Q13066	116 aa		11.14	□□□□□ -0.63
CLN3-256	ENST00000637107	TLX1NB	P0CAT3	122 aa		11.13	□□□□□ -0.63
CLN3-256	ENST00000637107		Q6Q795	121 aa		11.13	□□□□□ -0.63
CLN3-256	ENST00000637107	SMCR5	Q8TEV8	140 aa		11.13	□□□□□ -0.63
CLN3-256	ENST00000637107	COX7B	P24311	80 aa		11.13	□□□□□ -0.63
CLN3-256	ENST00000637107	SDIM1	Q6ZPB5	146 aa		11.13	□□□□□ -0.63
CLN3-256	ENST00000637107	DYNC1H1	Q14204	4646 aa	Known RBP	11.12	□□□□□ -0.63
CLN3-256	ENST00000637107	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	11.12	□□□□□ -0.63
CLN3-256	ENST00000637107	TRBV7-6	A0A0J9YX20	115 aa		11.11	□□□□□ -0.63
CLN3-256	ENST00000637107		A0A1B0GV72	72 aa		11.11	□□□□□ -0.63
CLN3-256	ENST00000637107	JMJD7-PLA2G4B	H0Y9G9	81 aa		11.11	□□□□□ -0.63
CLN3-256	ENST00000637107	ELOF1	P60002	83 aa	Known RBP	11.1	□□□□□ -0.63
CLN3-256	ENST00000637107	LINC00643	Q86TS7	51 aa		11.09	□□□□□ -0.63
CLN3-256	ENST00000637107	LRP1B	Q9NZR2	4599 aa		11.09	□□□□□ -0.63
CLN3-256	ENST00000637107	SERTAD4-AS1	Q5TG53	156 aa		11.09	□□□□□ -0.63
CLN3-256	ENST00000637107		Q6ZQY7	126 aa		11.08	□□□□□ -0.64
CLN3-256	ENST00000637107	TRBV7-7	A0A0K0K1E9	115 aa		11.07	□□□□□ -0.64
CLN3-256	ENST00000637107	C14orf177	Q52M58	125 aa		11.07	□□□□□ -0.64
CLN3-256	ENST00000637107	PLA2G2D	Q9UNK4	145 aa		11.07	□□□□□ -0.64
CLN3-256	ENST00000637107	CCK	P06307	115 aa		11.07	□□□□□ -0.64
CLN3-256	ENST00000637107	NKAPP1	Q8N9T2	125 aa		11.07	□□□□□ -0.64
CLN3-256	ENST00000637107	IGLV5-52	A0A0A0MRZ9	124 aa		11.06	□□□□□ -0.64
CLN3-256	ENST00000637107	C16orf90	A8MZG2	172 aa		11.05	□□□□□ -0.64
CLN3-256	ENST00000637107		H3BQ85	93 aa		11.05	□□□□□ -0.64
CLN3-256	ENST00000637107	C7orf33	Q8WU49	177 aa		11.05	□□□□□ -0.64
CLN3-256	ENST00000637107	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	11.05	□□□□□ -0.64
CLN3-256	ENST00000637107	LINC00528	Q8N1L1	170 aa		11.04	□□□□□ -0.64
CLN3-256	ENST00000637107	KCNQ1DN	Q9H478	68 aa		11.03	□□□□□ -0.64
CLN3-256	ENST00000637107	LINC00846	Q9NV44	126 aa		11.03	□□□□□ -0.64
CLN3-256	ENST00000637107	BIRC6	Q9NR09	4857 aa		11.03	□□□□□ -0.64
CLN3-256	ENST00000637107	IGLV5-37	A0A075B6J1	123 aa		11.03	□□□□□ -0.64
CLN3-256	ENST00000637107	LAMTOR3	Q9UHA4	124 aa		11.02	□□□□□ -0.65
CLN3-256	ENST00000637107	LOC107984640	A0A0U1RRK4	108 aa		11.01	□□□□□ -0.65
CLN3-256	ENST00000637107	IMUP	Q9GZP8	106 aa		11.01	□□□□□ -0.65
CLN3-256	ENST00000637107	FAM168B	A1KXE4	195 aa		11.01	□□□□□ -0.65
CLN3-256	ENST00000637107	RBM3	P98179	157 aa	Known RBP	11.01	□□□□□ -0.65
CLN3-256	ENST00000637107	NDUFV3	P56181	108 aa	Known RBP	11	□□□□□ -0.65
CLN3-256	ENST00000637107	KRTAP10-1	P60331	282 aa		10.99	□□□□□ -0.65
CLN3-256	ENST00000637107	CNBP	P62633	177 aa	Known RBP	10.99	□□□□□ -0.65
CLN3-256	ENST00000637107	KRTAP7-1	Q8IUC3	87 aa		10.99	□□□□□ -0.65
CLN3-256	ENST00000637107	ANAPC13	Q9BS18	74 aa		10.99	□□□□□ -0.65
CLN3-256	ENST00000637107	LOC110117498	A0A087WWA1	95 aa		10.97	□□□□□ -0.65
CLN3-256	ENST00000637107	GHRH	P01286	108 aa		10.97	□□□□□ -0.65
CLN3-256	ENST00000637107		Q6ZQT0	140 aa		10.97	□□□□□ -0.65
CLN3-256	ENST00000637107	APOB	P04114	4563 aa	Known RBP	10.97	□□□□□ -0.65
CLN3-256	ENST00000637107	IGLV1-50	A0A075B6I6	118 aa		10.96	□□□□□ -0.65
CLN3-256	ENST00000637107	C9orf163	Q8N9P6	203 aa		10.96	□□□□□ -0.65
CLN3-256	ENST00000637107	RPL37AP8	A6NKH3	93 aa		10.96	□□□□□ -0.66
CLN3-256	ENST00000637107		Q6JHZ5	121 aa		10.96	□□□□□ -0.66
CLN3-256	ENST00000637107	DNAH8	Q96JB1	4490 aa		10.95	□□□□□ -0.66
CLN3-256	ENST00000637107	PRY	O14603	147 aa		10.95	□□□□□ -0.66
CLN3-256	ENST00000637107	KIAA1109	Q2LD37	5005 aa		10.95	□□□□□ -0.66
CLN3-256	ENST00000637107	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	10.94	□□□□□ -0.66
CLN3-256	ENST00000637107	DSCR8	Q96T75	97 aa		10.94	□□□□□ -0.66
CLN3-256	ENST00000637107	SPRR1A	P35321	89 aa		10.92	□□□□□ -0.66
CLN3-256	ENST00000637107	MRPL55	Q7Z7F7	128 aa	Known RBP	10.92	□□□□□ -0.66
CLN3-256	ENST00000637107	FAM30A	Q9NZY2	134 aa		10.92	□□□□□ -0.66
CLN3-256	ENST00000637107	IGKV3D-7	A0A0C4DH55	119 aa		10.92	□□□□□ -0.66
CLN3-256	ENST00000637107	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	10.92	□□□□□ -0.66
CLN3-256	ENST00000637107	PDE6G	P18545	87 aa		10.92	□□□□□ -0.66
CLN3-256	ENST00000637107		B5MCH6	92 aa		10.9	□□□□□ -0.66
CLN3-256	ENST00000637107		A0A096LNI7	61 aa		10.9	□□□□□ -0.67
CLN3-256	ENST00000637107	FAM236A	A0A1B0GUQ0	79 aa		10.9	□□□□□ -0.67
CLN3-256	ENST00000637107	FAM236B	A0A1B0GV22	79 aa		10.9	□□□□□ -0.67
CLN3-256	ENST00000637107		Q6ZRX8	168 aa		10.9	□□□□□ -0.67
CLN3-256	ENST00000637107	TRBV7-4	A0A0J9YYF1	115 aa		10.89	□□□□□ -0.67
CLN3-256	ENST00000637107	ETDC	A0A1B0GVM5	59 aa		10.89	□□□□□ -0.67
CLN3-256	ENST00000637107	DHRS4-AS1	Q9P1J3	65 aa		10.89	□□□□□ -0.67
CLN3-256	ENST00000637107	RYR1	P21817	5038 aa		10.89	□□□□□ -0.67
CLN3-256	ENST00000637107	HSPG2	P98160	4391 aa		10.88	□□□□□ -0.67
CLN3-256	ENST00000637107	HAMP	P81172	84 aa		10.88	□□□□□ -0.67
CLN3-256	ENST00000637107		Q9BRP9	147 aa		10.87	□□□□□ -0.67
CLN3-256	ENST00000637107	UBL5	Q9BZL1	73 aa		10.87	□□□□□ -0.67
CLN3-256	ENST00000637107	PANO1	I0J062	215 aa		10.86	□□□□□ -0.67
CLN3-256	ENST00000637107		Q6ZSA8	131 aa		10.86	□□□□□ -0.67
CLN3-256	ENST00000637107	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	10.86	□□□□□ -0.67
CLN3-256	ENST00000637107	IGKV2-24	A0A0C4DH68	120 aa		10.85	□□□□□ -0.67
CLN3-256	ENST00000637107	CHTF8	P0CG12	524 aa		10.85	□□□□□ -0.67
CLN3-256	ENST00000637107	LINC01547	P58512	204 aa	Predicted RBP	10.84	□□□□□ -0.67
CLN3-256	ENST00000637107	ATP5EP2	Q5VTU8	51 aa		10.84	□□□□□ -0.67
CLN3-256	ENST00000637107		Q8N377	158 aa		10.84	□□□□□ -0.67
CLN3-256	ENST00000637107	DEFB105A	Q8NG35	78 aa		10.84	□□□□□ -0.67
CLN3-256	ENST00000637107		A0A1W2PNN7	141 aa		10.84	□□□□□ -0.67

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