RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 LINC00474Q9P2X8 69 aa10.19□□□□□ -0.78
CPSF1-213ENST00000620219 RTL8CO15255 209 aa10.19□□□□□ -0.78
CPSF1-213ENST00000620219 COL7A1Q02388 2944 aa10.18□□□□□ -0.78
CPSF1-213ENST00000620219 C16orf90A8MZG2 172 aa10.18□□□□□ -0.78
CPSF1-213ENST00000620219 ANK2Q01484 3957 aa10.17□□□□□ -0.78
CPSF1-213ENST00000620219 A0A087WTM6 91 aa10.16□□□□□ -0.78
CPSF1-213ENST00000620219 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.16□□□□□ -0.78
CPSF1-213ENST00000620219 ANAPC13Q9BS18 74 aa10.16□□□□□ -0.78
CPSF1-213ENST00000620219 A0A1B0GX51 115 aa10.16□□□□□ -0.78
CPSF1-213ENST00000620219 DHRS4-AS1Q9P1J3 65 aa10.16□□□□□ -0.78
CPSF1-213ENST00000620219 C3orf22Q8N5N4 141 aa10.16□□□□□ -0.78
CPSF1-213ENST00000620219 NDUFV3P56181 108 aaKnown RBP10.15□□□□□ -0.79
CPSF1-213ENST00000620219 A0A1W2PNN7 141 aa10.14□□□□□ -0.79
CPSF1-213ENST00000620219 C3orf84H3BNL1 204 aa10.13□□□□□ -0.79
CPSF1-213ENST00000620219 SDIM1Q6ZPB5 146 aa10.13□□□□□ -0.79
CPSF1-213ENST00000620219 PRYO14603 147 aa10.13□□□□□ -0.79
CPSF1-213ENST00000620219 CCKP06307 115 aa10.13□□□□□ -0.79
CPSF1-213ENST00000620219 ELOF1P60002 83 aaKnown RBP10.12□□□□□ -0.79
CPSF1-213ENST00000620219 C9orf163Q8N9P6 203 aa10.12□□□□□ -0.79
CPSF1-213ENST00000620219 ACYP1P07311 99 aa10.12□□□□□ -0.79
CPSF1-213ENST00000620219 C9orf153Q5TBE3 101 aa10.11□□□□□ -0.79
CPSF1-213ENST00000620219 ST20-AS1Q8NBB2 130 aa10.11□□□□□ -0.79
CPSF1-213ENST00000620219 LINC00476Q8WZB0 136 aa10.11□□□□□ -0.79
CPSF1-213ENST00000620219 SCXQ7RTU7 201 aa10.11□□□□□ -0.79
CPSF1-213ENST00000620219 C1orf137Q5JT78 98 aa10.1□□□□□ -0.79
CPSF1-213ENST00000620219 TNP2Q05952 138 aa10.09□□□□□ -0.79
CPSF1-213ENST00000620219 TLX1NBP0CAT3 122 aa10.09□□□□□ -0.79
CPSF1-213ENST00000620219 IGLV1-50A0A075B6I6 118 aa10.09□□□□□ -0.79
CPSF1-213ENST00000620219 LINC00846Q9NV44 126 aa10.08□□□□□ -0.8
CPSF1-213ENST00000620219 SMCR5Q8TEV8 140 aa10.08□□□□□ -0.8
CPSF1-213ENST00000620219 H3BQ85 93 aa10.07□□□□□ -0.8
CPSF1-213ENST00000620219 CNBPP62633 177 aaKnown RBP10.07□□□□□ -0.8
CPSF1-213ENST00000620219 NREPQ16612 68 aa10.07□□□□□ -0.8
CPSF1-213ENST00000620219 Q6ZRX8 168 aa10.07□□□□□ -0.8
CPSF1-213ENST00000620219 IGLV9-49A0A0B4J1Y8 123 aa10.07□□□□□ -0.8
CPSF1-213ENST00000620219 FAM236AA0A1B0GUQ0 79 aa10.07□□□□□ -0.8
CPSF1-213ENST00000620219 FAM236BA0A1B0GV22 79 aa10.07□□□□□ -0.8
CPSF1-213ENST00000620219 FBN3Q75N90 2809 aa10.07□□□□□ -0.8
CPSF1-213ENST00000620219 KCNQ1DNQ9H478 68 aa10.06□□□□□ -0.8
CPSF1-213ENST00000620219 LINC00643Q86TS7 51 aa10.05□□□□□ -0.8
CPSF1-213ENST00000620219 LINC00528Q8N1L1 170 aa10.04□□□□□ -0.8
CPSF1-213ENST00000620219 HRCT1Q6UXD1 115 aa10.04□□□□□ -0.8
CPSF1-213ENST00000620219 CSMD3Q7Z407 3707 aa10.03□□□□□ -0.8
CPSF1-213ENST00000620219 FAM240AA0A1B0GVK7 77 aa10.03□□□□□ -0.8
CPSF1-213ENST00000620219 EPM2AB3EWF7 344 aa10.02□□□□□ -0.81
CPSF1-213ENST00000620219 PDE6GP18545 87 aa10.02□□□□□ -0.81
CPSF1-213ENST00000620219 A0A087WVE0 104 aa10.01□□□□□ -0.81
CPSF1-213ENST00000620219 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.01□□□□□ -0.81
CPSF1-213ENST00000620219 MEGF8Q7Z7M0 2845 aa10.01□□□□□ -0.81
CPSF1-213ENST00000620219 ERC2-IT1O76042 136 aa9.99□□□□□ -0.81
CPSF1-213ENST00000620219 Q9BRP9 147 aa9.99□□□□□ -0.81
CPSF1-213ENST00000620219 TRBV7-6A0A0J9YX20 115 aa9.99□□□□□ -0.81
CPSF1-213ENST00000620219 B5MCH6 92 aa9.98□□□□□ -0.81
CPSF1-213ENST00000620219 HUWE1Q7Z6Z7 4374 aaKnown RBP9.97□□□□□ -0.81
CPSF1-213ENST00000620219 KRTAP21-3Q3LHN1 58 aa9.97□□□□□ -0.81
CPSF1-213ENST00000620219 PLA2G2DQ9UNK4 145 aa9.96□□□□□ -0.81
CPSF1-213ENST00000620219 A0A0G2JQZ4 141 aa9.96□□□□□ -0.81
CPSF1-213ENST00000620219 PANO1I0J062 215 aa9.95□□□□□ -0.82
CPSF1-213ENST00000620219 BPY2O14599 106 aa9.94□□□□□ -0.82
CPSF1-213ENST00000620219 DEFB116Q30KQ4 102 aa9.92□□□□□ -0.82
CPSF1-213ENST00000620219 Q8N377 158 aa9.92□□□□□ -0.82
CPSF1-213ENST00000620219 CDK2AP2O75956 126 aa9.92□□□□□ -0.82
CPSF1-213ENST00000620219 Q6ZQT0 140 aa9.92□□□□□ -0.82
CPSF1-213ENST00000620219 LINC01600Q96MT4 127 aa9.92□□□□□ -0.82
CPSF1-213ENST00000620219 CMYA5Q8N3K9 4069 aa9.91□□□□□ -0.82
CPSF1-213ENST00000620219 BCE1O60756 84 aa9.91□□□□□ -0.82
CPSF1-213ENST00000620219 Q6ZR54 194 aa9.91□□□□□ -0.82
CPSF1-213ENST00000620219 Q6ZRN7 208 aaPredicted RBP9.9□□□□□ -0.82
CPSF1-213ENST00000620219 SVIPQ8NHG7 77 aa9.9□□□□□ -0.82
CPSF1-213ENST00000620219 ANAPC11Q9NYG5 84 aa9.9□□□□□ -0.83
CPSF1-213ENST00000620219 A0A087WSZ3 146 aa9.89□□□□□ -0.83
CPSF1-213ENST00000620219 IGLV5-37A0A075B6J1 123 aa9.89□□□□□ -0.83
CPSF1-213ENST00000620219 KRTAP7-1Q8IUC3 87 aa9.89□□□□□ -0.83
CPSF1-213ENST00000620219 PSORS1C2Q9UIG4 136 aa9.88□□□□□ -0.83
CPSF1-213ENST00000620219 DNHD1Q96M86 4753 aa9.88□□□□□ -0.83
CPSF1-213ENST00000620219 Q6ZVQ6 151 aa9.88□□□□□ -0.83
CPSF1-213ENST00000620219 Q8N9L7 120 aa9.88□□□□□ -0.83
CPSF1-213ENST00000620219 KRTAP10-2P60368 255 aa9.87□□□□□ -0.83
CPSF1-213ENST00000620219 ZNF706Q9Y5V0 76 aaPredicted RBP9.87□□□□□ -0.83
CPSF1-213ENST00000620219 SRRM2Q9UQ35 2752 aaKnown RBP9.87□□□□□ -0.83
CPSF1-213ENST00000620219 SPINK6Q6UWN8 80 aa9.87□□□□□ -0.83
CPSF1-213ENST00000620219 CIRBP-AS1Q8TBR5 109 aa9.86□□□□□ -0.83
CPSF1-213ENST00000620219 H0Y9J4 135 aa9.86□□□□□ -0.83
CPSF1-213ENST00000620219 SMR3BP02814 79 aaPredicted RBP9.86□□□□□ -0.83
CPSF1-213ENST00000620219 Q6JHZ5 121 aa9.85□□□□□ -0.83
CPSF1-213ENST00000620219 SPACA4Q8TDM5 124 aa9.85□□□□□ -0.83
CPSF1-213ENST00000620219 OBSCN-AS1Q96MR7 158 aa9.85□□□□□ -0.83
CPSF1-213ENST00000620219 CCDC179H3BU77 68 aa9.84□□□□□ -0.83
CPSF1-213ENST00000620219 MOBPQ13875 183 aa9.83□□□□□ -0.84
CPSF1-213ENST00000620219 TRBV7-7A0A0K0K1E9 115 aa9.82□□□□□ -0.84
CPSF1-213ENST00000620219 LINC01547P58512 204 aaPredicted RBP9.81□□□□□ -0.84
CPSF1-213ENST00000620219 C4orf48Q5BLP8 95 aa9.81□□□□□ -0.84
CPSF1-213ENST00000620219 Q6Q795 121 aa9.8□□□□□ -0.84
CPSF1-213ENST00000620219 LOC110117498A0A087WWA1 95 aa9.8□□□□□ -0.84
CPSF1-213ENST00000620219 IMUPQ9GZP8 106 aa9.8□□□□□ -0.84
CPSF1-213ENST00000620219 DNAH9Q9NYC9 4486 aa9.79□□□□□ -0.84
CPSF1-213ENST00000620219 KRTAP11-1Q8IUC1 163 aa9.79□□□□□ -0.84
CPSF1-213ENST00000620219 SPRR1AP35321 89 aa9.78□□□□□ -0.84
CPSF1-213ENST00000620219 TRBV7-4A0A0J9YYF1 115 aa9.78□□□□□ -0.84
CPSF1-213ENST00000620219 FAM30AQ9NZY2 134 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms